mdtraj.Trajectory
=================

.. currentmodule:: mdtraj

.. autoclass:: Trajectory

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~Trajectory.__init__
      ~Trajectory.atom_slice
      ~Trajectory.center_coordinates
      ~Trajectory.image_molecules
      ~Trajectory.join
      ~Trajectory.load
      ~Trajectory.make_molecules_whole
      ~Trajectory.openmm_boxes
      ~Trajectory.openmm_positions
      ~Trajectory.remove_solvent
      ~Trajectory.restrict_atoms
      ~Trajectory.save
      ~Trajectory.save_amberrst7
      ~Trajectory.save_cif
      ~Trajectory.save_dcd
      ~Trajectory.save_dtr
      ~Trajectory.save_gro
      ~Trajectory.save_gsd
      ~Trajectory.save_hdf5
      ~Trajectory.save_lammpstrj
      ~Trajectory.save_lh5
      ~Trajectory.save_mdcrd
      ~Trajectory.save_netcdf
      ~Trajectory.save_netcdfrst
      ~Trajectory.save_pdb
      ~Trajectory.save_trr
      ~Trajectory.save_xtc
      ~Trajectory.save_xyz
      ~Trajectory.slice
      ~Trajectory.smooth
      ~Trajectory.stack
      ~Trajectory.superpose
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~Trajectory.n_atoms
      ~Trajectory.n_chains
      ~Trajectory.n_frames
      ~Trajectory.n_residues
      ~Trajectory.time
      ~Trajectory.timestep
      ~Trajectory.top
      ~Trajectory.topology
      ~Trajectory.unitcell_angles
      ~Trajectory.unitcell_lengths
      ~Trajectory.unitcell_vectors
      ~Trajectory.unitcell_volumes
      ~Trajectory.xyz
   
   