macs (3.0.2-2build1) resolute; urgency=medium

  * No-change rebuild to drop Python 3.13 bits.

 -- Matthias Klose <doko@ubuntu.com>  Fri, 20 Mar 2026 11:28:44 +0100

macs (3.0.2-2) unstable; urgency=medium

  * Team Upload
  * Fix FTBFS with new Cython (Closes: #1120217)
  * Bump Standards-Version to 4.7.2
  * Drop "Rules-Requires-Root": it is the default now

 -- Alexandre Detiste <tchet@debian.org>  Sat, 29 Nov 2025 14:48:58 +0100

macs (3.0.2-1) unstable; urgency=medium

  * d/rules: document that the openmp-simd and related SIMDe build flags are
    already set by upstream.
  * New upstream version
  * Dropped 4 patches applied upstream; refreshed the rest

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 08 Sep 2024 01:09:37 +0200

macs (3.0.1-2) unstable; urgency=medium

  * d/rules: make use of dh_numpy3 to add the numpy ABI dependency.
  * d/patches/spelling: fix typos.
  * d/lintian-overrides: update to match change in warnings.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 28 Feb 2024 12:39:52 +0100

macs (3.0.1-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version. Closes: #1056813
  * New Build-Depends: python3-cykhash, python3-hmmlearn
  * Fix location of simde header
  * No runtime dependency from cython
    Closes: #1057991

  [ Michael R. Crusoe ]
  * New upstream version
  * Refreshed patches.
  * d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
  * d/clean: remove temp/ directory leftover from test execution.
    Closes: #1047612
  * d/rules: s/MACS2/MACS3/g for new major version.
  * d/patches/simde: doesn't need forwarding
  * d/control: build dep on newer packaging version of cykhash to pick
    up Python 3.12 support.
  * d/control: build dep on newer packaging version of hmmlearn to pick
    up Python 3.12 support.
  * d/rules: choose a better path to the launch script for testing

  TODO: cmdline test failures:
   16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
   16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
   16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
   16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
  * d/patch/no_install_depends_cython.patch removed, applied upstream.
  * add patch to force the use of Python3.
  * d/control: add build-dep on bc for the tests.
  * d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream
    author to match the prelease version of hmmlearn in the archive.
  * d/patches/invalid_escape_sequence: fix a SyntaxWarning.

 -- Michael R. Crusoe <crusoe@debian.org>  Sat, 24 Feb 2024 12:56:15 +0100

macs (2.2.9.1-1) unstable; urgency=medium

  * New upstream release. Closes: #1042180, #1041203
  * d/patches: drop enable_python3.10.patch & no-pip.patch; they are no
    longer needed
  * d/patches: forward patches upstream as appropriate.
  * no longer call dh_auto_clean to avoid call to "setup.py clean" which
    always runs cython.
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 09 Aug 2023 12:18:49 +0200

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog macs`.
