#!/bin/bash
set -e
set -x

pkg="macs"


if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP
gunzip *.gz

macs3 callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01
macs3 callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1
