macs (3.0.2-1build3) plucky; urgency=medium

  * No-change rebuild with Python 3.13 only

 -- Graham Inggs <ginggs@ubuntu.com>  Tue, 04 Mar 2025 15:51:03 +0000

macs (3.0.2-1build2) plucky; urgency=medium

  * No-change rebuild against python3-numpy2-abi0

 -- Graham Inggs <ginggs@ubuntu.com>  Tue, 28 Jan 2025 11:28:49 +0000

macs (3.0.2-1build1) plucky; urgency=medium

  * No-change rebuild to add support for Python 3.13.

 -- Matthias Klose <doko@ubuntu.com>  Fri, 15 Nov 2024 04:37:27 +0100

macs (3.0.2-1) unstable; urgency=medium

  * d/rules: document that the openmp-simd and related SIMDe build flags are
    already set by upstream.
  * New upstream version
  * Dropped 4 patches applied upsteram; refreshed the rest

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 08 Sep 2024 01:09:37 +0200

macs (3.0.1-2) unstable; urgency=medium

  * d/rules: make use of dh_numpy3 to add the numpy ABI dependency.
  * d/patches/spelling: fix typos.
  * d/lintian-overrides: update to match change in warnings.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 28 Feb 2024 12:39:52 +0100

macs (3.0.1-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version. Closes: #1056813
  * New Build-Depends: python3-cykhash, python3-hmmlearn
  * Fix location of simde header
  * No runtime dependency from cython
    Closes: #1057991

  [ Michael R. Crusoe ]
  * New upstream version
  * Refreshed patches.
  * d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
  * d/clean: remove temp/ directory leftover from test execution.
    Closes: #1047612
  * d/rules: s/MACS2/MACS3/g for new major version.
  * d/patches/simde: doesn't need forwarding
  * d/control: build dep on newer packaging version of cykhash to pick
    up Python 3.12 support.
  * d/control: build dep on newer packaging version of hmmlearn to pick
    up Python 3.12 support.
  * d/rules: choose a better path to the launch script for testing

  TODO: cmdline test failures:
   16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
   16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
   16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
   16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
  * d/patch/no_install_depends_cython.patch removed, applied upstream.
  * add patch to force the use of Python3.
  * d/control: add build-dep on bc for the tests.
  * d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream
    author to match the prelease version of hmmlearn in the archive.
  * d/patches/invalid_escape_sequence: fix a SyntaxWarning.

 -- Michael R. Crusoe <crusoe@debian.org>  Sat, 24 Feb 2024 12:56:15 +0100

macs (2.2.9.1-1) unstable; urgency=medium

  * New upstream release. Closes: #1042180, #1041203
  * d/patches: drop enable_python3.10.patch & no-pip.patch; they are no
    longer needed
  * d/patches: forward patches upstream as appropriate.
  * no longer call dh_auto_clean to avoid call to "setup.py clean" which
    always runs cython.
  * Standards-Version: 4.6.2 (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 09 Aug 2023 12:18:49 +0200

macs (2.2.7.1-6) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1

 -- Andreas Tille <tille@debian.org>  Thu, 24 Nov 2022 12:18:59 +0100

macs (2.2.7.1-5) unstable; urgency=medium

  * Enable Builds with python3.10
    Closes: #998440

 -- Andreas Tille <tille@debian.org>  Mon, 08 Nov 2021 14:29:12 +0100

macs (2.2.7.1-4) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * watch file standard 4 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 01 Oct 2021 16:24:57 +0200

macs (2.2.7.1-3) unstable; urgency=medium

  * Link properly with libm
    Closes: #965073
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <tille@debian.org>  Wed, 15 Jul 2020 23:27:39 +0200

macs (2.2.7.1-2) unstable; urgency=medium

  * Ensure that debian/rules clean always suceeds. Closes #958109

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 27 Apr 2020 19:31:48 +0200

macs (2.2.7.1-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debian/patches/fix_test_signal_failures: removed, applied upstream
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Add cython3 build-dep and force a fresh cythonizing
  * debian/patches/keep_debug: remove the -g0 from setup.py
  * fix manpages by adjusting the PYTHONPATH

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 13 Apr 2020 10:29:34 +0200

macs (2.2.6-3) unstable; urgency=medium

  * Skip command line tests on arm64 ppc64el s390x.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 28 Dec 2019 12:57:18 +0100

macs (2.2.6-2) unstable; urgency=medium

  * Run even more tests.
  * Patch from upstream to fix test that fails with Python 3.8.1rc1+

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 20 Dec 2019 13:24:14 -0800

macs (2.2.6-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Drop cython from Build-Depends

  [ Michael R. Crusoe ]
  * New upstream version
  * Set upstream metadata fields: Repository.
  * Remove obsolete fields Name from debian/upstream/metadata.
  * Get sources from GitHub, so we have the tests
  * New upstream version

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 17 Dec 2019 15:35:50 +0100

macs (2.2.4-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.4.1
  * Build with Python3
    Closes: #936976

 -- Andreas Tille <tille@debian.org>  Thu, 03 Oct 2019 21:18:16 +0200

macs (2.1.4-1) unstable; urgency=medium

  * New upstream version
  * Add patch to fix spelling typo

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 01 Oct 2019 12:35:55 +0200

macs (2.1.3.3-1) unstable; urgency=medium

  [ Jelmer Vernooĳ ]
  * Trim trailing whitespace.

  [ Michael R. Crusoe ]
  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Set upstream metadata fields: Name.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 30 Sep 2019 13:34:12 +0200

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog macs`.
