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rf_nodeproxy.hxx
1/************************************************************************/
2/* */
3/* Copyright 2008-2009 by Ullrich Koethe and Rahul Nair */
4/* */
5/* This file is part of the VIGRA computer vision library. */
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7/* http://hci.iwr.uni-heidelberg.de/vigra/ */
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34/************************************************************************/
35
36#ifndef VIGRA_RANDOM_FOREST_NP_HXX
37#define VIGRA_RANDOM_FOREST_NP_HXX
38
39#include <algorithm>
40#include <map>
41#include <numeric>
42#include "vigra/mathutil.hxx"
43#include "vigra/array_vector.hxx"
44#include "vigra/sized_int.hxx"
45#include "vigra/matrix.hxx"
46#include "vigra/random.hxx"
47#include "vigra/functorexpression.hxx"
48
49
50 namespace vigra
51{
52
53
54
55 enum NodeTags
56{
57 UnFilledNode = 42,
58 AllColumns = 0x00000000,
59 ToBePrunedTag = 0x80000000,
60 LeafNodeTag = 0x40000000,
61
62 i_ThresholdNode = 0,
63 i_HyperplaneNode = 1,
64 i_HypersphereNode = 2,
65 e_ConstProbNode = 0 | LeafNodeTag,
66 e_LogRegProbNode = 1 | LeafNodeTag
67};
68
69/** NodeBase class.
70
71 \ingroup DecicionTree
72
73 This class implements common features of all nodes.
74 Memory Structure:
75 Int32 Array: TypeID, ParameterAddr, Child0, Child1, [ColumnData]0_
76 double Array: NodeWeight, [Parameters]1_
77
78 TODO: Throw away the crappy iterators and use vigra::ArrayVectorView
79 it is not like anybody else is going to use this NodeBase class
80 is it?
81
82 TODO: use the RF_Traits::ProblemSpec_t to specify the external
83 parameters instead of the options.
84*/
85
86
87 class NodeBase
88{
89 public:
90 typedef Int32 INT;
91 typedef ArrayVector<INT> T_Container_type;
92 typedef ArrayVector<double> P_Container_type;
93 typedef T_Container_type::iterator Topology_type;
94 typedef P_Container_type::iterator Parameter_type;
95
96
97 mutable Topology_type topology_;
98 int topology_size_;
99
100 mutable Parameter_type parameters_;
101 int parameter_size_ ;
102
103 // Tree Parameters
104 int featureCount_;
105 int classCount_;
106
107 // Node Parameters
108 bool hasData_;
109
110
111
112
113 /** get Node Weight
114 */
115 double & weights()
116 {
117 return parameters_begin()[0];
118 }
119
120 double const & weights() const
121 {
122 return parameters_begin()[0];
123 }
124
125 /** has the data been set?
126 * todo: throw this out - bad design
127 */
128 bool data() const
129 {
130 return hasData_;
131 }
132
133 /** get the node type id
134 * \sa NodeTags
135 */
136 INT& typeID()
137 {
138 return topology_[0];
139 }
140
141 INT const & typeID() const
142 {
143 return topology_[0];
144 }
145
146 /** Where in the parameter_ array are the weights?
147 */
148 INT & parameter_addr()
149 {
150 return topology_[1];
151 }
152
153 INT const & parameter_addr() const
154 {
155 return topology_[1];
156 }
157
158 /** Column Range **/
159 Topology_type column_data() const
160 {
161 return topology_ + 4 ;
162 }
163
164 /** get the start iterator to the columns
165 * - once again - throw out - static members are crap.
166 */
167 Topology_type columns_begin() const
168 {
169 return column_data()+1;
170 }
171
172 /** how many columns?
173 */
174 int columns_size() const
175 {
176 if(*column_data() == AllColumns)
177 return featureCount_;
178 else
179 return *column_data();;
180 }
181
182 /** end iterator to the columns
183 */
184 Topology_type columns_end() const
185 {
186 return columns_begin() + columns_size();
187 }
188
189 /** Topology Range - gives access to the raw Topo memory
190 * the size_ member was added as a result of premature
191 * optimisation.
192 */
193 Topology_type topology_begin() const
194 {
195 return topology_;
196 }
197 Topology_type topology_end() const
198 {
199 return topology_begin() + topology_size();
200 }
201 int topology_size() const
202 {
203 return topology_size_;
204 }
205
206 /** Parameter Range **/
207 Parameter_type parameters_begin() const
208 {
209 return parameters_;
210 }
211 Parameter_type parameters_end() const
212 {
213 return parameters_begin() + parameters_size();
214 }
215
216 int parameters_size() const
217 {
218 return parameter_size_;
219 }
220
221
222 /** where are the child nodes?
223 */
224 INT & child(Int32 l)
225 {
226 return topology_begin()[2+l];
227 }
228
229 /** where are the child nodes?
230 */
231 INT const & child(Int32 l) const
232 {
233 return topology_begin()[2+l];
234 }
235
236 /** Default Constructor**/
237 NodeBase()
238 :
239 hasData_(false)
240 {}
241 void copy(const NodeBase& o)
242 {
243 vigra_precondition(topology_size_==o.topology_size_,"Cannot copy nodes of different sizes");
244 vigra_precondition(featureCount_==o.featureCount_,"Cannot copy nodes with different feature count");
245 vigra_precondition(classCount_==o.classCount_,"Cannot copy nodes with different class counts");
246 vigra_precondition(parameters_size() ==o.parameters_size(),"Cannot copy nodes with different parameter sizes");
247 std::copy(o.topology_begin(), o.topology_end(), topology_);
248 std::copy(o.parameters_begin(),o.parameters_end(), parameters_);
249 }
250
251 /** create ReadOnly Base Node at position n (actual length is unknown)
252 * only common features i.e. children etc are accessible.
253 */
254 NodeBase( T_Container_type const & topology,
255 P_Container_type const & parameter,
256 INT n)
257 :
258 topology_ (const_cast<Topology_type>(topology.begin()+ n)),
259 topology_size_(4),
260 parameters_ (const_cast<Parameter_type>(parameter.begin() + parameter_addr())),
261 parameter_size_(1),
262 featureCount_(topology[0]),
263 classCount_(topology[1]),
264 hasData_(true)
265 {
266 /*while((int)xrange.size() < featureCount_)
267 xrange.push_back(xrange.size());*/
268 }
269
270 /** create ReadOnly node with known length (the parameter range is valid)
271 */
272 NodeBase( int tLen,
273 int pLen,
274 T_Container_type const & topology,
275 P_Container_type const & parameter,
276 INT n)
277 :
278 topology_ (const_cast<Topology_type>(topology.begin()+ n)),
279 topology_size_(tLen),
280 parameters_ (const_cast<Parameter_type>(parameter.begin() + parameter_addr())),
281 parameter_size_(pLen),
282 featureCount_(topology[0]),
283 classCount_(topology[1]),
284 hasData_(true)
285 {
286 /*while((int)xrange.size() < featureCount_)
287 xrange.push_back(xrange.size());*/
288 }
289 /** create ReadOnly node with known length
290 * from existing Node
291 */
292 NodeBase( int tLen,
293 int pLen,
294 NodeBase & node)
295 :
296 topology_ (node.topology_),
297 topology_size_(tLen),
298 parameters_ (node.parameters_),
299 parameter_size_(pLen),
300 featureCount_(node.featureCount_),
301 classCount_(node.classCount_),
302 hasData_(true)
303 {
304 /*while((int)xrange.size() < featureCount_)
305 xrange.push_back(xrange.size());*/
306 }
307
308
309 /** create new Node at end of vector
310 * \param tLen number of integers needed in the topolog vector
311 * \param pLen number of parameters needed (this includes the node
312 * weight)
313 * \param topology reference to Topology array of decision tree.
314 * \param parameter reference to Parameter array of decision tree.
315 **/
316 NodeBase( int tLen,
317 int pLen,
318 T_Container_type & topology,
319 P_Container_type & parameter)
320 :
321 topology_size_(tLen),
322 parameter_size_(pLen),
323 featureCount_(topology[0]),
324 classCount_(topology[1]),
325 hasData_(true)
326 {
327 /*while((int)xrange.size() < featureCount_)
328 xrange.push_back(xrange.size());*/
329
330 size_t n = topology.size();
331 for(int ii = 0; ii < tLen; ++ii)
332 topology.push_back(0);
333 //topology.resize (n + tLen);
334
335 topology_ = topology.begin()+ n;
336 typeID() = UnFilledNode;
337
338 parameter_addr() = static_cast<int>(parameter.size());
339
340 //parameter.resize(parameter.size() + pLen);
341 for(int ii = 0; ii < pLen; ++ii)
342 parameter.push_back(0);
343
344 parameters_ = parameter.begin()+ parameter_addr();
345 weights() = 1;
346 }
347
348
349 /** PseudoCopy Constructor -
350 *
351 * Copy Node to the end of a container.
352 * Since each Node views on different data there can't be a real
353 * copy constructor (unless both objects should point to the
354 * same underlying data.
355 */
356 NodeBase( NodeBase const & toCopy,
357 T_Container_type & topology,
358 P_Container_type & parameter)
359 :
360 topology_size_(toCopy.topology_size()),
361 parameter_size_(toCopy.parameters_size()),
362 featureCount_(topology[0]),
363 classCount_(topology[1]),
364 hasData_(true)
365 {
366 /*while((int)xrange.size() < featureCount_)
367 xrange.push_back(xrange.size());*/
368
369 size_t n = topology.size();
370 for(int ii = 0; ii < toCopy.topology_size(); ++ii)
371 topology.push_back(toCopy.topology_begin()[ii]);
372// topology.insert(topology.end(), toCopy.topology_begin(), toCopy.topology_end());
373 topology_ = topology.begin()+ n;
374 parameter_addr() = static_cast<int>(parameter.size());
375 for(int ii = 0; ii < toCopy.parameters_size(); ++ii)
376 parameter.push_back(toCopy.parameters_begin()[ii]);
377// parameter.insert(parameter.end(), toCopy.parameters_begin(), toCopy.parameters_end());
378 parameters_ = parameter.begin()+ parameter_addr();
379 }
380};
381
382
383 template<NodeTags NodeType>
384 class Node;
385
386 template<>
387 class Node<i_ThresholdNode>
388: public NodeBase
389{
390
391
392 public:
393 typedef NodeBase BT;
394
395 /**constructors **/
396
397 Node( BT::T_Container_type & topology,
398 BT::P_Container_type & param)
399 : BT(5,2,topology, param)
400 {
401 BT::typeID() = i_ThresholdNode;
402 }
403
404 Node( BT::T_Container_type const & topology,
405 BT::P_Container_type const & param,
406 INT n )
407 : BT(5,2,topology, param, n)
408 {}
409
410 Node( BT & node_)
411 : BT(5, 2, node_)
412 {}
413
414 double& threshold()
415 {
416 return BT::parameters_begin()[1];
417 }
418
419 double const & threshold() const
420 {
421 return BT::parameters_begin()[1];
422 }
423
424 BT::INT& column()
425 {
426 return BT::column_data()[0];
427 }
428 BT::INT const & column() const
429 {
430 return BT::column_data()[0];
431 }
432
433 template<class U, class C>
434 BT::INT next(MultiArrayView<2,U,C> const & feature) const
435 {
436 return (feature(0, column()) < threshold())? child(0):child(1);
437 }
438};
439
440
441 template<>
442 class Node<i_HyperplaneNode>
443: public NodeBase
444{
445 public:
446
447 typedef NodeBase BT;
448
449 /**constructors **/
450
451 Node( int nCol,
452 BT::T_Container_type & topology,
453 BT::P_Container_type & split_param)
454 : BT(nCol + 5,nCol + 2,topology, split_param)
455 {
456 BT::typeID() = i_HyperplaneNode;
457 }
458
459 Node( BT::T_Container_type const & topology,
460 BT::P_Container_type const & split_param,
461 int n )
462 : NodeBase(5 , 2,topology, split_param, n)
463 {
464 //TODO : is there a more elegant way to do this?
465 BT::topology_size_ += BT::column_data()[0]== AllColumns ?
466 0
467 : BT::column_data()[0];
468 BT::parameter_size_ += BT::columns_size();
469 }
470
471 Node( BT & node_)
472 : BT(5, 2, node_)
473 {
474 //TODO : is there a more elegant way to do this?
475 BT::topology_size_ += BT::column_data()[0]== AllColumns ?
476 0
477 : BT::column_data()[0];
478 BT::parameter_size_ += BT::columns_size();
479 }
480
481
482 double const & intercept() const
483 {
484 return BT::parameters_begin()[1];
485 }
486 double& intercept()
487 {
488 return BT::parameters_begin()[1];
489 }
490
491 BT::Parameter_type weights() const
492 {
493 return BT::parameters_begin()+2;
494 }
495
496 BT::Parameter_type weights()
497 {
498 return BT::parameters_begin()+2;
499 }
500
501
502 template<class U, class C>
503 BT::INT next(MultiArrayView<2,U,C> const & feature) const
504 {
505 double result = -1 * intercept();
506 if(*(BT::column_data()) == AllColumns)
507 {
508 for(int ii = 0; ii < BT::columns_size(); ++ii)
509 {
510 result +=feature[ii] * weights()[ii];
511 }
512 }
513 else
514 {
515 for(int ii = 0; ii < BT::columns_size(); ++ii)
516 {
517 result +=feature[BT::columns_begin()[ii]] * weights()[ii];
518 }
519 }
520 return result < 0 ? BT::child(0)
521 : BT::child(1);
522 }
523};
524
525
526
527 template<>
528 class Node<i_HypersphereNode>
529: public NodeBase
530{
531 public:
532
533 typedef NodeBase BT;
534
535 /**constructors **/
536
537 Node( int nCol,
538 BT::T_Container_type & topology,
539 BT::P_Container_type & param)
540 : NodeBase(nCol + 5,nCol + 1,topology, param)
541 {
542 BT::typeID() = i_HypersphereNode;
543 }
544
545 Node( BT::T_Container_type const & topology,
546 BT::P_Container_type const & param,
547 int n )
548 : NodeBase(5, 1,topology, param, n)
549 {
550 BT::topology_size_ += BT::column_data()[0]== AllColumns ?
551 0
552 : BT::column_data()[0];
553 BT::parameter_size_ += BT::columns_size();
554 }
555
556 Node( BT & node_)
557 : BT(5, 1, node_)
558 {
559 BT::topology_size_ += BT::column_data()[0]== AllColumns ?
560 0
561 : BT::column_data()[0];
562 BT::parameter_size_ += BT::columns_size();
563
564 }
565
566 double const & squaredRadius() const
567 {
568 return BT::parameters_begin()[1];
569 }
570
571 double& squaredRadius()
572 {
573 return BT::parameters_begin()[1];
574 }
575
576 BT::Parameter_type center() const
577 {
578 return BT::parameters_begin()+2;
579 }
580
581 BT::Parameter_type center()
582 {
583 return BT::parameters_begin()+2;
584 }
585
586 template<class U, class C>
587 BT::INT next(MultiArrayView<2,U,C> const & feature) const
588 {
589 double result = -1 * squaredRadius();
590 if(*(BT::column_data()) == AllColumns)
591 {
592 for(int ii = 0; ii < BT::columns_size(); ++ii)
593 {
594 result += (feature[ii] - center()[ii])*
595 (feature[ii] - center()[ii]);
596 }
597 }
598 else
599 {
600 for(int ii = 0; ii < BT::columns_size(); ++ii)
601 {
602 result += (feature[BT::columns_begin()[ii]] - center()[ii])*
603 (feature[BT::columns_begin()[ii]] - center()[ii]);
604 }
605 }
606 return result < 0 ? BT::child(0)
607 : BT::child(1);
608 }
609};
610
611
612/** ExteriorNodeBase class.
613
614 \ingroup DecicionTree
615
616 This class implements common features of all interior nodes.
617 All interior nodes are derived classes of ExteriorNodeBase.
618*/
619
620
621
622
623
624
625 template<>
626 class Node<e_ConstProbNode>
627: public NodeBase
628{
629 public:
630
631 typedef NodeBase BT;
632
633 Node( BT::T_Container_type & topology,
634 BT::P_Container_type & param)
635 :
636 BT(2,topology[1]+1, topology, param)
637
638 {
639 BT::typeID() = e_ConstProbNode;
640 }
641
642
643 Node( BT::T_Container_type const & topology,
644 BT::P_Container_type const & param,
645 int n )
646 : BT(2, topology[1]+1,topology, param, n)
647 { }
648
649
650 Node( BT & node_)
651 : BT(2, node_.classCount_ +1, node_)
652 {}
653 BT::Parameter_type prob_begin() const
654 {
655 return BT::parameters_begin()+1;
656 }
657 BT::Parameter_type prob_end() const
658 {
659 return prob_begin() + prob_size();
660 }
661 int prob_size() const
662 {
663 return BT::classCount_;
664 }
665};
666
667 template<>
668 class Node<e_LogRegProbNode>;
669
670} // namespace vigra
671
672#endif //RF_nodeproxy
vigra::ArrayVector< INT >
vigra::NodeBase
Definition rf_nodeproxy.hxx:88
vigra::NodeBase::child
INT const & child(Int32 l) const
Definition rf_nodeproxy.hxx:231
vigra::NodeBase::parameter_addr
INT & parameter_addr()
Definition rf_nodeproxy.hxx:148
vigra::NodeBase::NodeBase
NodeBase(int tLen, int pLen, NodeBase &node)
Definition rf_nodeproxy.hxx:292
vigra::NodeBase::data
bool data() const
Definition rf_nodeproxy.hxx:128
vigra::NodeBase::columns_end
Topology_type columns_end() const
Definition rf_nodeproxy.hxx:184
vigra::NodeBase::child
INT & child(Int32 l)
Definition rf_nodeproxy.hxx:224
vigra::NodeBase::topology_begin
Topology_type topology_begin() const
Definition rf_nodeproxy.hxx:193
vigra::NodeBase::NodeBase
NodeBase(int tLen, int pLen, T_Container_type &topology, P_Container_type &parameter)
Definition rf_nodeproxy.hxx:316
vigra::NodeBase::columns_size
int columns_size() const
Definition rf_nodeproxy.hxx:174
vigra::NodeBase::column_data
Topology_type column_data() const
Definition rf_nodeproxy.hxx:159
vigra::NodeBase::NodeBase
NodeBase(int tLen, int pLen, T_Container_type const &topology, P_Container_type const &parameter, INT n)
Definition rf_nodeproxy.hxx:272
vigra::NodeBase::typeID
INT & typeID()
Definition rf_nodeproxy.hxx:136
vigra::NodeBase::NodeBase
NodeBase()
Definition rf_nodeproxy.hxx:237
vigra::NodeBase::NodeBase
NodeBase(T_Container_type const &topology, P_Container_type const &parameter, INT n)
Definition rf_nodeproxy.hxx:254
vigra::NodeBase::NodeBase
NodeBase(NodeBase const &toCopy, T_Container_type &topology, P_Container_type &parameter)
Definition rf_nodeproxy.hxx:356
vigra::NodeBase::weights
double & weights()
Definition rf_nodeproxy.hxx:115
vigra::NodeBase::parameters_begin
Parameter_type parameters_begin() const
Definition rf_nodeproxy.hxx:207
vigra::NodeBase::columns_begin
Topology_type columns_begin() const
Definition rf_nodeproxy.hxx:167
vigra::RGBValue
Class for a single RGB value.
Definition rgbvalue.hxx:128
vigra::TinyVectorBase::size
size_type size() const
Definition tinyvector.hxx:913
vigra::TinyVectorBase::begin
iterator begin()
Definition tinyvector.hxx:861
vigra
vigra::Int32
detail::SelectIntegerType< 32, detail::SignedIntTypes >::type Int32
32-bit signed int
Definition sized_int.hxx:175

© Ullrich Köthe (ullrich.koethe@iwr.uni-heidelberg.de) Heidelberg Collaboratory for Image Processing, University of Heidelberg, Germany | html generated using doxygen and Python vigra 1.11.1