VCFSITESUMMARIZE(1)

NAME

vcfsitesummarize

SYNOPSIS

vcfsitesummarize

DESCRIPTION

Summarize by site

EXAMPLES

    Example:

    **vcfsitesummarize** samples/sample.vcf

    CHROM   POS     ID      REF     QUAL    FILTER  AA      AC      AF      AN      DP      NS      DB      H2
    19      111     .       A       9.6     .                                                       0       0
    19      112     .       A       10      .                                                       0       0
    20      14370   rs6054257       G       29      PASS                    0.5             14      3       1 1
    20      17330   .       T       3       q10                     0.017           11      3       0       0
    20      1110696 rs6040355       A       67      PASS    T                               10      2       1 0
    20      1230237 .       T       47      PASS    T                               13      3       0       0
    20      1234567 microsat1       G       50      PASS    G                       6       9       3       0 0
    20      1235237 .       T       0       .                                                       0       0
    X       10      rsTest  AC      10      PASS

    Type: statistics

EXIT VALUES

0   Success

not 0
    Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

AUTHORS
Erik Garrison and vcflib contributors.