NORMALIZE-IHS(1)

NAME

normalize-iHS

SYNOPSIS

normalizeHS -s 0.01 -f input.txt

DESCRIPTION

normalizes iHS or XP-EHH scores.

OPTIONS

    A cross-population extended haplotype homozygosity (XP-EHH) score is
    directional: a positive score suggests selection is likely to have
    happened in population A, whereas a negative score suggests the same
    about population B. See for example
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/

    Output : **normalize-iHS** adds one additional column to input (normalized score).
    required: -f            -- Output from iHS or XPEHH
    optional: -s            -- Max AF diff for window [0.01]

    Type: genotype

EXIT VALUES

0   Success

not 0
    Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.

AUTHORS
Erik Garrison and vcflib contributors.