Package: libtfbs-perl
Version: 0.7.1+ds-6build1
Architecture: amd64
Architecture-Variant: amd64v3
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 981
Depends: pdl (>= 1:2.106-1build1), pdlapi-20, perl (>= 5.42.3-1), perlapi-5.42.3, libc6 (>= 2.38), bioperl, libdbi-perl, libwww-perl
Recommends: libgd-perl
Section: perl
Priority: optional
Homepage: http://tfbs.genereg.net
Description: scanning DNA sequence with a position weight matrix
 The TFBS perl modules comprise a set of routines to interact with the
 Transfac and Jaspar databases that describe a special family of proteins,
 the transcription factors. These bind to genomic DNA to initiate (or
 prevent) the readout of a gene.  Once multiple binding sites are known
 for a transcription factor, these are gathered in a single file and are
 aligned in order to find position-specific characteristica that might
 be used to predict such binding events in novel DNA sequences.
 .
 If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
 TFBS: Computational framework for transcription factor binding site analysis.
 Bioinformatics 18:1135-1136".
 .
 Note: the TFBS perl module is no longer under active development.  All the
 functionality can be found in the TFBSTools Bioconductor package; users are
 highly encouraged to switch.  <http://bioconductor.org/packages/TFBSTools/>
