TFBS::Word(3pm)

NAME
TFBS::Word - base class for word-based patterns

DESCRIPTION
TFBS::Word is a base class consisting of universal constructor called by its subclasses (TFBS::Matrix::*), and word pattern manipulation methods that are independent of the word type. It is not meant to be instantiated itself.

FEEDBACK
Please send bug reports and other comments to the author.

AUTHOR - Boris Lenhard
Boris Lenhard <Boris.Lenhard@cgb.ki.se>

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore.

  new

  word

  validate_word
Required in all subclasses

  length

  search_seq

  search_aln