digraph "SamFileReader"
{
 // LATEX_PDF_SIZE
  bgcolor="transparent";
  edge [fontname=FreeSans,fontsize=10,labelfontname=FreeSans,labelfontsize=10];
  node [fontname=FreeSans,fontsize=10,shape=box,height=0.2,width=0.4];
  rankdir="LR";
  Node1 [id="Node000001",label="SamFileReader",height=0.2,width=0.4,color="gray40", fillcolor="grey60", style="filled", fontcolor="black",tooltip="Child class of SamFile for reading files."];
  Node2 -> Node1 [id="edge1_Node000001_Node000002",dir="back",color="steelblue1",style="solid",tooltip=" "];
  Node2 [id="Node000002",label="SamFile",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",URL="$classSamFile.html",tooltip="Allows the user to easily read/write a SAM/BAM file."];
  Node3 -> Node2 [id="edge2_Node000002_Node000003",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myFilePtr

> ,fontcolor="grey" ];
  Node3 [id="Node000003",label="InputFile",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",URL="$classInputFile.html",tooltip="Class for easily reading/writing files without having to worry about file type (uncompressed,..."];
  Node4 -> Node3 [id="edge3_Node000003_Node000004",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myFileTypePtr

> ,fontcolor="grey" ];
  Node4 [id="Node000004",label="FileType",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classFileType.html",tooltip=" "];
  Node5 -> Node3 [id="edge4_Node000003_Node000005",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myFileName

> ,fontcolor="grey" ];
  Node5 [id="Node000005",label="std::string",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",tooltip=" "];
  Node6 -> Node5 [id="edge5_Node000005_Node000006",dir="back",color="steelblue1",style="solid",tooltip=" "];
  Node6 [id="Node000006",label="std::basic_string\<\l Char \>",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",tooltip=" "];
  Node7 -> Node2 [id="edge6_Node000002_Node000007",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myInterfacePtr

> ,fontcolor="grey" ];
  Node7 [id="Node000007",label="GenericSamInterface",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classGenericSamInterface.html",tooltip=" "];
  Node8 -> Node2 [id="edge7_Node000002_Node000008",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myPrevReadName

> ,fontcolor="grey" ];
  Node8 [id="Node000008",label="String",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classString.html",tooltip=" "];
  Node9 -> Node2 [id="edge8_Node000002_Node000009",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myStatistics

> ,fontcolor="grey" ];
  Node9 [id="Node000009",label="SamStatistics",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classSamStatistics.html",tooltip=" "];
  Node10 -> Node2 [id="edge9_Node000002_Node000010",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myStatus

> ,fontcolor="grey" ];
  Node10 [id="Node000010",label="StatGenStatus",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",URL="$classStatGenStatus.html",tooltip="This class is used to track the status results of some methods in the BAM classes."];
  Node11 -> Node2 [id="edge10_Node000002_Node000011",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myChunksToRead

> ,fontcolor="grey" ];
  Node11 [id="Node000011",label="SortedChunkList",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classSortedChunkList.html",tooltip=" "];
  Node12 -> Node2 [id="edge11_Node000002_Node000012",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myBamIndex

> ,fontcolor="grey" ];
  Node12 [id="Node000012",label="BamIndex",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classBamIndex.html",tooltip=" "];
  Node13 -> Node12 [id="edge12_Node000012_Node000013",dir="back",color="steelblue1",style="solid",tooltip=" "];
  Node13 [id="Node000013",label="IndexBase",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classIndexBase.html",tooltip=" "];
  Node14 -> Node13 [id="edge13_Node000013_Node000014",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myRefs

> ,fontcolor="grey" ];
  Node14 [id="Node000014",label="std::vector\< IndexBase\l::Reference \>",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",tooltip=" "];
  Node15 -> Node14 [id="edge14_Node000014_Node000015",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 elements

> ,fontcolor="grey" ];
  Node15 [id="Node000015",label="IndexBase::Reference",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classIndexBase_1_1Reference.html",tooltip=" "];
  Node16 -> Node15 [id="edge15_Node000015_Node000016",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 bins

> ,fontcolor="grey" ];
  Node16 [id="Node000016",label="std::vector\< IndexBase\l::Bin \>",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",tooltip=" "];
  Node17 -> Node16 [id="edge16_Node000016_Node000017",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 elements

> ,fontcolor="grey" ];
  Node17 [id="Node000017",label="IndexBase::Bin",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classIndexBase_1_1Bin.html",tooltip=" "];
  Node18 -> Node17 [id="edge17_Node000017_Node000018",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 chunks

> ,fontcolor="grey" ];
  Node18 [id="Node000018",label="Chunk",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classChunk.html",tooltip=" "];
  Node19 -> Node2 [id="edge18_Node000002_Node000019",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myRefPtr

> ,fontcolor="grey" ];
  Node19 [id="Node000019",label="GenomeSequence",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",URL="$classGenomeSequence.html",tooltip="Create/Access/Modify/Load Genome Sequences stored as binary mapped files."];
  Node20 -> Node19 [id="edge19_Node000019_Node000020",dir="back",color="steelblue1",style="solid",tooltip=" "];
  Node20 [id="Node000020",label="genomeSequenceArray",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",URL="$classMemoryMapArray.html",tooltip=" "];
  Node21 -> Node20 [id="edge20_Node000020_Node000021",dir="back",color="steelblue1",style="solid",tooltip=" "];
  Node21 [id="Node000021",label="MemoryMap",height=0.2,width=0.4,color="gray40", fillcolor="white", style="filled",URL="$classMemoryMap.html",tooltip="There are a pair of related data structures in the operating system, and also a few simple algorithms..."];
  Node5 -> Node2 [id="edge21_Node000002_Node000005",dir="back",color="darkorchid3",style="dashed",tooltip=" ",label=<
 myRefName

> ,fontcolor="grey" ];
}
