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Here is a list of all documented class members with links to the class documentation for each member:

### - c -

- checkFloat() : SamRecord
- checkInteger() : SamRecord
- checkRead() : GenomeSequence
- checkSequence() : SamRecordHelper
- checkString() : SamRecord
- checkTag() : SamRecord
- Cigar() : Cigar
- CigarOperator() : Cigar::CigarOperator
- CigarRoller() : CigarRoller
- clear() : BaseComposition, CigarRoller, ReusableVector< DATA_TYPE >, SamReferenceInfo, SamValidationErrors
- clearTags() : SamRecord
- clipOnMismatchThreshold() : SamFilter
- CLIPPED : SamFilter
- Close() : SamFile
- close() : GlfFile
- closeFile() : FastQFile
- color2int : BaseAsciiMap
- COLOR_SPACE : BaseAsciiMap
- combineChromPos() : SamHelper
- COORDINATE : SamFile
- copy() : GlfHeader, GlfRefSection, SamFileHeader
- create() : MemoryMap, MemoryMapArray< elementT, indexT, cookieVal, versionVal, accessorFunc, setterFunc, elementCount2BytesFunc, arrayHeaderClass >
- createCopy() : SamHeaderHD, SamHeaderPG, SamHeaderRecord, SamHeaderRG, SamHeaderSQ
- createMDTag() : SamTags