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Tabix Member List

This is the complete list of members for Tabix, including all inherited members.

Format enum name (defined in Tabix) | Tabix |
FORMAT_GENERIC enum value (defined in Tabix) | Tabix |
FORMAT_SAM enum value (defined in Tabix) | Tabix |
FORMAT_VCF enum value (defined in Tabix) | Tabix |
getBinsForRegion(uint32_t start, uint32_t end, bool binMap[MAX_NUM_BINS+1]) (defined in IndexBase) | IndexBase | protected static
getFormat() const (defined in Tabix) | Tabix | inline
getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, uint64_t &minOffset) const (defined in IndexBase) | IndexBase |
getNumRefs() const | IndexBase |
getRefName(unsigned int indexNum) const | Tabix |
getStartPos(const char *refName, int32_t start, uint64_t &fileStartPos) const | Tabix |
IndexBase() (defined in IndexBase) | IndexBase |
LINEAR_INDEX_SHIFT (defined in IndexBase) | IndexBase | protected static
MAX_NUM_BINS (defined in IndexBase) | IndexBase | protected static
MAX_POSITION (defined in IndexBase) | IndexBase | protected static
myRefs (defined in IndexBase) | IndexBase | protected
n_ref (defined in IndexBase) | IndexBase | protected
readIndex(const char *filename) | Tabix | virtual
resetIndex() | Tabix | virtual
Tabix() (defined in Tabix) | Tabix |
~IndexBase() (defined in IndexBase) | IndexBase | virtual
~Tabix() (defined in Tabix) | Tabix | virtual