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general Directory Reference

## Directories

| test

## Files

| BaseAsciiMap.cpp
| BaseAsciiMap.h
| BaseQualityHelper.cpp
| BaseQualityHelper.h
| BaseUtilities.cpp
| BaseUtilities.h
| BasicHash.cpp
| BasicHash.h
| BgzfFileType.cpp
| BgzfFileType.h
| BgzfFileTypeRecovery.cpp
| BgzfFileTypeRecovery.h
| CharBuffer.cpp
| CharBuffer.h
| Chromosome.cpp
| Chromosome.h
| Cigar.cpp
| Cigar.h
| CigarRoller.cpp
| CigarRoller.h
| Constant.h
| CSG_MD5.h
| Error.cpp
| Error.h
| ErrorHandler.cpp
| ErrorHandler.h
| FileType.cpp
| FileType.h
| FortranFormat.cpp
| FortranFormat.h
| Generic.cpp
| Generic.h
| GenomeSequence.cpp
| GenomeSequence.h
| GenomeSequenceHelpers.h
| GenotypeLists.cpp
| GenotypeLists.h
| glfHandler.cpp
| glfHandler.h
| GreedyTupleAligner.h
| GzipFileType.cpp
| GzipFileType.h
| GzipHeader.cpp
| GzipHeader.h
| Hash.cpp
| Hash.h
| IndexBase.cpp
| IndexBase.h
| InplaceMerge.cpp
| InplaceMerge.h
| Input.cpp
| Input.h
| InputFile.cpp
| InputFile.h
| IntArray.cpp
| IntArray.h
| IntHash.cpp
| IntHash.h
| LongHash.h
| LongInt.h
| LongLongCounter.cpp
| LongLongCounter.h
| MapFunction.cpp
| MapFunction.h
| MathConstant.h
| MathMatrix.cpp
| MathMatrix.h
| MathVector.cpp
| MathVector.h
| MemoryAllocators.cpp
| MemoryAllocators.h
| MemoryInfo.cpp
| MemoryInfo.h
| MemoryMap.cpp
| MemoryMap.h
| MemoryMapArray.cpp
| MemoryMapArray.h
| MiniDeflate.cpp
| MiniDeflate.h
| NonOverlapRegions.cpp
| NonOverlapRegions.h
| PackedVector.h
| Parameters.cpp
| Parameters.h
| Pedigree.cpp
| Pedigree.h
| PedigreeAlleleFreq.cpp
| PedigreeAlleleFreq.h
| PedigreeAlleles.h
| PedigreeDescription.cpp
| PedigreeDescription.h
| PedigreeFamily.cpp
| PedigreeFamily.h
| PedigreeGlobals.cpp
| PedigreeGlobals.h
| PedigreeLoader.cpp
| PedigreePerson.cpp
| PedigreePerson.h
| PedigreeTrim.cpp
| PedigreeTwin.cpp
| Performance.h
| PhoneHome.cpp
| PhoneHome.h
| QuickIndex.cpp
| QuickIndex.h
| Random.cpp
| Random.h
| ReferenceSequence.cpp
| ReferenceSequence.h
| ReusableVector.h
| SimpleStats.h
| SmithWaterman.cpp
| SmithWaterman.h
| Sort.cpp
| Sort.h
| StatGenStatus.cpp
| StatGenStatus.h
| STLUtilities.cpp
| STLUtilities.h
| String.cpp
| StringAlias.cpp
| StringAlias.h
| StringArray.cpp
| StringArray.h
| StringBasics.cpp
| StringBasics.h
| StringHash.cpp
| StringHash.h
| StringMap.cpp
| StringMap.h
| Tabix.cpp
| Tabix.h
| TrimSequence.h
| UncompressedFileType.cpp
| UncompressedFileType.h
| UnitTest.h