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Here is a list of all documented functions with links to the class documentation for each member:

### - r -

- read() : GlfHeader, GlfRecord, GlfRefSection
- ReadBamIndex() : SamFile
- readFastQSequence() : FastQFile
- readHeader() : GlfFile
- ReadHeader() : SamFile
- readIndex() : BamIndex, IndexBase, Tabix
- readLine() : InputFile
- ReadRecord() : SamFile
- readTilChar() : InputFile
- readTilTab() : InputFile
- releaseRecord() : SamRecordPool
- Remove() : CigarRoller
- removeHD() : SamFileHeader
- removePG() : SamFileHeader
- removeRG() : SamFileHeader
- removeSQ() : SamFileHeader
- reset() : GlfRecord, GlfStatus, PileupElement, PileupElementBaseQual, ReusableVector< DATA_TYPE >, SamHeaderRecord, SamQuerySeqWithRefIter, StatGenStatus
- resetBaseMapType() : BaseAsciiMap, BaseComposition
- resetCommentIter() : SamFileHeader
- resetErrorIter() : SamValidationErrors
- resetFile() : SamFile
- resetHeader() : GlfHeader, SamFileHeader
- resetHeaderRecordIter() : SamFileHeader
- resetIndex() : BamIndex, IndexBase, Tabix
- resetPGRecordIter() : SamFileHeader
- resetPrimerCount() : BaseAsciiMap
- resetRecord() : SamRecord
- resetRefSection() : GlfRefSection
- resetRGRecordIter() : SamFileHeader
- resetSQRecordIter() : SamFileHeader
- resetTagIter() : SamRecord
- rmTag() : SamRecord
- rmTags() : SamRecord