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TestPileup Member List

This is the complete list of members for TestPileup, including all inherited members.

flushPileup() | Pileup< TestPileupElement > |
Pileup(const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >()) | Pileup< TestPileupElement > |
Pileup(int window, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >()) | Pileup< TestPileupElement > |
Pileup(const std::string &refSeqFileName, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >()) | Pileup< TestPileupElement > |
Pileup(int window, const std::string &refSeqFileName, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >()) | Pileup< TestPileupElement > |
processAlignment(SamRecord &record) | Pileup< TestPileupElement > | virtual
processAlignmentRegion(SamRecord &record, int startPos, int endPos, PosList *excludeList=NULL) | Pileup< TestPileupElement > | virtual
processFile(const std::string &fileName, uint16_t excludeFlag=0x0704, uint16_t includeFlag=0) | Pileup< TestPileupElement > | virtual
testPileupPosition() (defined in TestPileup) | TestPileup |
~Pileup() | Pileup< TestPileupElement > | virtual