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SamFileHeader Member List

This is the complete list of members for SamFileHeader, including all inherited members.

addComment(const char *comment) | SamFileHeader |
addHD(SamHeaderHD *hd) | SamFileHeader |
addHeader(const char *header) | SamFileHeader |
addHeaderLine(const char *type, const char *tag, const char *value) | SamFileHeader |
addHeaderLine(const char *headerLine) | SamFileHeader |
addPG(SamHeaderPG *pg) | SamFileHeader |
addRecordCopy(const SamHeaderRecord &hdrRec) | SamFileHeader |
addRG(SamHeaderRG *rg) | SamFileHeader |
addSQ(SamHeaderSQ *sq) | SamFileHeader |
appendCommentLines(std::string &commentLines) | SamFileHeader |
copy(const SamFileHeader &header) | SamFileHeader |
EMPTY_RETURN (defined in SamFileHeader) | SamFileHeader | static
getErrorMessage() | SamFileHeader | inline
getHD() | SamFileHeader |
getHDTagValue(const char *tag) | SamFileHeader |
getHeaderString(std::string &header) const | SamFileHeader |
getNextComment() | SamFileHeader |
getNextHeaderLine(std::string &headerLine) | SamFileHeader |
getNextHeaderRecord(uint32_t &index, SamHeaderRecord::SamHeaderRecordType headerType) | SamFileHeader |
getNextHeaderRecord() | SamFileHeader |
getNextPGRecord() | SamFileHeader |
getNextRGRecord() | SamFileHeader |
getNextSQRecord() | SamFileHeader |
getNumPGs() | SamFileHeader |
getNumRGs() | SamFileHeader |
getNumSQs() | SamFileHeader |
getPG(const char *id) | SamFileHeader |
getPGTagValue(const char *tag, const char *id) | SamFileHeader |
getReferenceID(const String &referenceName, bool addID=false) | SamFileHeader |
getReferenceID(const char *referenceName, bool addID=false) | SamFileHeader |
getReferenceInfo() const | SamFileHeader |
getReferenceInfoForBamInterface() (defined in SamFileHeader) | SamFileHeader |
getReferenceLabel(int id) const | SamFileHeader |
getRG(const char *id) | SamFileHeader |
getRGTagValue(const char *tag, const char *id) | SamFileHeader |
getSortOrder() | SamFileHeader |
getSQ(const char *name) | SamFileHeader |
getSQTagValue(const char *tag, const char *name) | SamFileHeader |
getTagSO() | SamFileHeader |
operator=(const SamFileHeader &header) | SamFileHeader |
removeHD() | SamFileHeader |
removePG(const char *id) | SamFileHeader |
removeRG(const char *id) | SamFileHeader |
removeSQ(const char *name) | SamFileHeader |
resetCommentIter() | SamFileHeader |
resetHeader() | SamFileHeader |
resetHeaderRecordIter() | SamFileHeader |
resetPGRecordIter() | SamFileHeader |
resetRGRecordIter() | SamFileHeader |
resetSQRecordIter() | SamFileHeader |
SamFileHeader() (defined in SamFileHeader) | SamFileHeader |
SamFileHeader(const SamFileHeader &header) | SamFileHeader |
setHDTag(const char *tag, const char *value) | SamFileHeader |
setPGTag(const char *tag, const char *value, const char *id) | SamFileHeader |
setRGTag(const char *tag, const char *value, const char *id) | SamFileHeader |
setSQTag(const char *tag, const char *value, const char *name) | SamFileHeader |
~SamFileHeader() (defined in SamFileHeader) | SamFileHeader |