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Pedigree Member List

This is the complete list of members for Pedigree, including all inherited members.

AddPerson(const char *famid, const char *pid, const char *fatid, const char *motid, int sex, bool delay_sort=false) (defined in Pedigree) | Pedigree |
affectionCount (defined in PedigreeGlobals) | PedigreeGlobals | static
affectionLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
affectionNames (defined in PedigreeGlobals) | PedigreeGlobals | static
AlleleFrequenciesAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | static
AutosomalCheck() (defined in Pedigree) | Pedigree |
chromosomeX (defined in PedigreeGlobals) | PedigreeGlobals | static
count (defined in Pedigree) | Pedigree |
CountAlleles(int marker) (defined in Pedigree) | Pedigree |
covariateCount (defined in PedigreeGlobals) | PedigreeGlobals | static
covariateLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
covariateNames (defined in PedigreeGlobals) | PedigreeGlobals | static
Dichotomize(int trait, double mean=_NAN_) (defined in Pedigree) | Pedigree |
DichotomizeAll(double mean=_NAN_) (defined in Pedigree) | Pedigree |
EstimateFrequencies(int estimator, bool quiet=false) (defined in Pedigree) | Pedigree |
ExtractFamily(int id, Pedigree &new_ped) (defined in Pedigree) | Pedigree |
ExtractOnAffection(int a, Pedigree &new_ped, int target_status=2) (defined in Pedigree) | Pedigree |
families (defined in Pedigree) | Pedigree |
familyCount (defined in Pedigree) | Pedigree |
Filter(IntArray &filter) (defined in Pedigree) | Pedigree |
FindFamily(const char *famid) (defined in Pedigree) | Pedigree |
FindPerson(const char *famid, const char *pid) (defined in Pedigree) | Pedigree |
FlagMissingMarkers(IntArray &missingMarkers) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetAffectionID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetCovariateID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetMarkerID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetMarkerInfo(String &name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetMarkerInfo(int marker) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetOrderedMarkers(IntArray &markers) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetStringID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetTraitID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GrowMarkerInfo() (defined in PedigreeGlobals) | PedigreeGlobals | static
haveTwins (defined in Pedigree) | Pedigree |
InheritanceCheck(bool abortIfInconsistent=true) (defined in Pedigree) | Pedigree |
Load(IFILE &input) (defined in Pedigree) | Pedigree |
Load(const char *input, bool allowFailures=false) (defined in Pedigree) | Pedigree |
LoadAllele(int marker, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadAllele(MarkerInfo *info, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadAlleleFrequencies(const char *filename, bool required=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadAlleleFrequencies(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadBasepairMap(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadBasepairMap(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadMarkerMap(const char *filename, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadMarkerMap(IFILE &file, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadMendel(IFILE &input) (defined in Pedigree) | Pedigree |
LookupAffection(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupCovariate(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupMarker(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupString(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupTrait(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LumpAlleles(double treshold, bool reorder=true) (defined in Pedigree) | Pedigree |
markerCount (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfo (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoByInteger (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoByName (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoCount (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoSize (defined in PedigreeGlobals) | PedigreeGlobals | static
markerLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
markerNames (defined in PedigreeGlobals) | PedigreeGlobals | static
MarkerPositionsAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | static
MergeTwins() (defined in Pedigree) | Pedigree |
missing (defined in Pedigree) | Pedigree | static
multiFileCount (defined in Pedigree) | Pedigree |
multiPd (defined in Pedigree) | Pedigree |
operator[](int i) (defined in Pedigree) | Pedigree | inline
pd (defined in Pedigree) | Pedigree |
Pedigree() (defined in Pedigree) | Pedigree |
PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals | inline
persons (defined in Pedigree) | Pedigree |
Prepare(IFILE &input) (defined in Pedigree) | Pedigree |
Prepare(const char *input) (defined in Pedigree) | Pedigree |
PrepareDichotomization() (defined in Pedigree) | Pedigree |
sexAsCovariate (defined in Pedigree) | Pedigree | static
SexLinkedCheck() (defined in Pedigree) | Pedigree |
sexSpecificMap (defined in PedigreeGlobals) | PedigreeGlobals | static
ShowMemoryInfo() (defined in Pedigree) | Pedigree |
size (defined in Pedigree) | Pedigree |
Sort() (defined in Pedigree) | Pedigree |
SortMarkersInMapOrder(IntArray &markers, int chromosome=-1) (defined in PedigreeGlobals) | PedigreeGlobals | static
stringCount (defined in PedigreeGlobals) | PedigreeGlobals | static
stringLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
stringNames (defined in PedigreeGlobals) | PedigreeGlobals | static
traitCount (defined in PedigreeGlobals) | PedigreeGlobals | static
traitLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
traitNames (defined in PedigreeGlobals) | PedigreeGlobals | static
TranslateSexCode(const char *code, bool &failure) (defined in Pedigree) | Pedigree |
Trim(bool quiet=false, int *informative=NULL) (defined in Pedigree) | Pedigree |
TwinCheck() (defined in Pedigree) | Pedigree |
VerifySexSpecificOrder() (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteDataFile(FILE *output) (defined in Pedigree) | Pedigree |
WriteDataFile(const char *output) (defined in Pedigree) | Pedigree |
WriteFreqFile(const char *filename, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteFreqFile(FILE *file, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteMapFile(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteMapFile(FILE *file) (defined in PedigreeGlobals) | PedigreeGlobals | static
WritePedigreeFile(FILE *output) (defined in Pedigree) | Pedigree |
WritePedigreeFile(const char *output) (defined in Pedigree) | Pedigree |
WritePerson(FILE *output, int who, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) (defined in Pedigree) | Pedigree |
WriteRecodedPerson(FILE *output, int who, MarkerInfo **markerInfo, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) (defined in Pedigree) | Pedigree |
~Pedigree() (defined in Pedigree) | Pedigree |
~PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals |