SamFlag Member List

This is the complete list of members for SamFlag, including all inherited members.

DUPLICATE (defined in SamFlag) | SamFlag | static
FAILED_QUALITY (defined in SamFlag) | SamFlag | static
FIRST_READ (defined in SamFlag) | SamFlag | static
FRAGMENT_INFO (defined in SamFlag) | SamFlag | static
FRAGMENT_SHIFT (defined in SamFlag) | SamFlag | static
getFragmentType(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isDuplicate(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isFirstFragment(uint16_t flag) | SamFlag | inline static
isLastFragment(uint16_t flag) | SamFlag | inline static
isMapped(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isMateMapped(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isMateReverse(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isMidFragment(uint16_t flag) | SamFlag | inline static
isPaired(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isProperPair(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isQCFailure(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isReverse(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isSecondary(uint16_t flag) (defined in SamFlag) | SamFlag | inline static
isUnknownFragment(uint16_t flag) | SamFlag | inline static
MATE_REVERSED (defined in SamFlag) | SamFlag | static
MATE_UNMAPPED (defined in SamFlag) | SamFlag | static
PAIRED (defined in SamFlag) | SamFlag | static
PROPER_PAIR (defined in SamFlag) | SamFlag | static
REVERSE (defined in SamFlag) | SamFlag | static
SECOND_READ (defined in SamFlag) | SamFlag | static
SECONDARY_ALIGNMENT (defined in SamFlag) | SamFlag | static
setDuplicate(uint16_t &flag) | SamFlag | inline static
setNotDuplicate(uint16_t &flag) | SamFlag | inline static
setUnmapped(uint16_t &flag) | SamFlag | inline static
SUPPLEMENTARY_ALIGNMENT (defined in SamFlag) | SamFlag | static
UNMAPPED (defined in SamFlag) | SamFlag | static