general Directory Reference

## Directories

directory | test

## Files

file | BaseAsciiMap.cpp [code]
file | BaseAsciiMap.h [code]
file | BaseQualityHelper.cpp [code]
file | BaseQualityHelper.h [code]
file | BaseUtilities.cpp [code]
file | BaseUtilities.h [code]
file | BasicHash.cpp [code]
file | BasicHash.h [code]
file | BgzfFileType.cpp [code]
file | BgzfFileType.h [code]
file | BgzfFileTypeRecovery.cpp [code]
file | BgzfFileTypeRecovery.h [code]
file | CharBuffer.cpp [code]
file | CharBuffer.h [code]
file | Chromosome.cpp [code]
file | Chromosome.h [code]
file | Cigar.cpp [code]
file | Cigar.h [code]
file | CigarRoller.cpp [code]
file | CigarRoller.h [code]
file | Constant.h [code]
file | CSG_MD5.h [code]
file | Error.cpp [code]
file | Error.h [code]
file | ErrorHandler.cpp [code]
file | ErrorHandler.h [code]
file | FileType.cpp [code]
file | FileType.h [code]
file | FortranFormat.cpp [code]
file | FortranFormat.h [code]
file | Generic.cpp [code]
file | Generic.h [code]
file | GenomeSequence.cpp [code]
file | GenomeSequence.h [code]
file | GenomeSequenceHelpers.h [code]
file | GenotypeLists.cpp [code]
file | GenotypeLists.h [code]
file | glfHandler.cpp [code]
file | glfHandler.h [code]
file | GreedyTupleAligner.h [code]
file | GzipFileType.cpp [code]
file | GzipFileType.h [code]
file | GzipHeader.cpp [code]
file | GzipHeader.h [code]
file | Hash.cpp [code]
file | Hash.h [code]
file | IndexBase.cpp [code]
file | IndexBase.h [code]
file | InplaceMerge.cpp [code]
file | InplaceMerge.h [code]
file | Input.cpp [code]
file | Input.h [code]
file | InputFile.cpp [code]
file | InputFile.h [code]
file | IntArray.cpp [code]
file | IntArray.h [code]
file | IntHash.cpp [code]
file | IntHash.h [code]
file | LongHash.h [code]
file | LongInt.h [code]
file | LongLongCounter.cpp [code]
file | LongLongCounter.h [code]
file | MapFunction.cpp [code]
file | MapFunction.h [code]
file | MathConstant.h [code]
file | MathMatrix.cpp [code]
file | MathMatrix.h [code]
file | MathVector.cpp [code]
file | MathVector.h [code]
file | MemoryAllocators.cpp [code]
file | MemoryAllocators.h [code]
file | MemoryInfo.cpp [code]
file | MemoryInfo.h [code]
file | MemoryMap.cpp [code]
file | MemoryMap.h [code]
file | MemoryMapArray.cpp [code]
file | MemoryMapArray.h [code]
file | MiniDeflate.cpp [code]
file | MiniDeflate.h [code]
file | NonOverlapRegions.cpp [code]
file | NonOverlapRegions.h [code]
file | PackedVector.h [code]
file | Parameters.cpp [code]
file | Parameters.h [code]
file | Pedigree.cpp [code]
file | Pedigree.h [code]
file | PedigreeAlleleFreq.cpp [code]
file | PedigreeAlleleFreq.h [code]
file | PedigreeAlleles.h [code]
file | PedigreeDescription.cpp [code]
file | PedigreeDescription.h [code]
file | PedigreeFamily.cpp [code]
file | PedigreeFamily.h [code]
file | PedigreeGlobals.cpp [code]
file | PedigreeGlobals.h [code]
file | PedigreeLoader.cpp [code]
file | PedigreePerson.cpp [code]
file | PedigreePerson.h [code]
file | PedigreeTrim.cpp [code]
file | PedigreeTwin.cpp [code]
file | Performance.h [code]
file | PhoneHome.cpp [code]
file | PhoneHome.h [code]
file | QuickIndex.cpp [code]
file | QuickIndex.h [code]
file | Random.cpp [code]
file | Random.h [code]
file | ReferenceSequence.cpp [code]
file | ReferenceSequence.h [code]
file | ReusableVector.h [code]
file | SimpleStats.h [code]
file | SmithWaterman.cpp [code]
file | SmithWaterman.h [code]
file | Sort.cpp [code]
file | Sort.h [code]
file | StatGenStatus.cpp [code]
file | StatGenStatus.h [code]
file | STLUtilities.cpp [code]
file | STLUtilities.h [code]
file | String.cpp [code]
file | StringAlias.cpp [code]
file | StringAlias.h [code]
file | StringArray.cpp [code]
file | StringArray.h [code]
file | StringBasics.cpp [code]
file | StringBasics.h [code]
file | StringHash.cpp [code]
file | StringHash.h [code]
file | StringMap.cpp [code]
file | StringMap.h [code]
file | Tabix.cpp [code]
file | Tabix.h [code]
file | TrimSequence.h [code]
file | UncompressedFileType.cpp [code]
file | UncompressedFileType.h [code]
file | UnitTest.h [code]