TestPileup.h
/*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "Pileup.h"
#include "PileupElementBaseQual.h"
void testPileup();
class TestPileupElement : public PileupElementBaseQual
{
public:
// Overwrite to validate result.
virtual void analyze();
};
class TestPileup : public Pileup<TestPileupElement>
{
public:
void testPileupPosition();
private:
};
PileupElementBaseQual
This class inherits from the base class and stores base and qualities.
Definition: PileupElementBaseQual.h:26
Pileup
Class to perform a pileup of all reads by position, assuming the reads are coordinate sorted.
Definition: Pileup.h:59
TestPileupElement
Definition: TestPileup.h:24
TestPileupElement::analyze
virtual void analyze()
Perform the analysis associated with this class.
Definition: TestPileup.cpp:25
TestPileup
Definition: TestPileup.h:33