PedigreeAlleleFreq.h
/*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef __ALLELEFREQUENCIES_H__
#define __ALLELEFREQUENCIES_H__
#include "Pedigree.h"
int CountAlleles(Pedigree & ped, int marker);
void LumpAlleles(Pedigree & ped, int marker, double threshold, bool reorder);
#define FREQ_ALL 0
#define FREQ_FOUNDERS 1
#define FREQ_EQUAL 2
// Returns true if frequencies estimated, false if previous information okay
bool EstimateFrequencies(Pedigree & ped, int marker, int estimator);
#endif
Pedigree
Definition: Pedigree.h:33