SamHeaderHD.cpp
/*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "SamHeaderHD.h"
// Constructor
SamHeaderHD::SamHeaderHD()
{
// Add required tags for this type.
myType = SamHeaderRecord::HD;
myTypeString = "HD";
addRequiredTag("VN");
myKeyTag.clear();
}
// Destructor
SamHeaderHD::~SamHeaderHD()
{
}
const char* SamHeaderHD::getSortOrder()
{
return(getTagValue("SO"));
}
SamHeaderRecord* SamHeaderHD ::createCopy() const
{
SamHeaderHD* newHD = new SamHeaderHD();
if(newHD == NULL)
{
std::cerr << "Failed to create a copy of an HD Header Record\n" ;
return(NULL);
}
internalCopy(*newHD);
return(newHD);
}
SamHeaderHD
Definition: SamHeaderHD.h:24
SamHeaderHD::createCopy
virtual SamHeaderRecord * createCopy() const
Return a pointer to a newly created header record of the appropriate type that is a copy of this reco...
Definition: SamHeaderHD.cpp:43
SamHeaderRecord
This class encapsulates the tag value pairs contained with a SAM Header line with accessors for getti...
Definition: SamHeaderRecord.h:28
SamHeaderRecord::getTagValue
const char * getTagValue(const char *tag) const
Return the value associated with the specified tag.
Definition: SamHeaderRecord.cpp:100
SamHeaderRecord::HD
@ HD
Header.
Definition: SamHeaderRecord.h:32