FastQFile Member List

This is the complete list of members for FastQFile, including all inherited members.

closeFile() | FastQFile |
disableMessages() | FastQFile |
disableSeqIDCheck() | FastQFile |
enableMessages() | FastQFile |
enableSeqIDCheck() | FastQFile |
FastQFile(int minReadLength=10, int numPrintableErrors=20) | FastQFile |
getSpaceType() | FastQFile | inline
interleaved() | FastQFile |
isEof() | FastQFile |
isOpen() | FastQFile |
keepReadingFile() | FastQFile |
myPlusLine (defined in FastQFile) | FastQFile |
myQualityString (defined in FastQFile) | FastQFile |
myRawSequence (defined in FastQFile) | FastQFile |
mySequenceIdentifier (defined in FastQFile) | FastQFile |
mySequenceIdLine (defined in FastQFile) | FastQFile |
openFile(const char *fileName, BaseAsciiMap::SPACE_TYPE spaceType=BaseAsciiMap::UNKNOWN) | FastQFile |
readFastQSequence() | FastQFile |
setMaxErrors(int maxErrors) | FastQFile |
validateFastQFile(const String &filename, bool printBaseComp, BaseAsciiMap::SPACE_TYPE spaceType, bool printQualAvg=false) | FastQFile |