TestPileup.cpp
/*
* Copyright (C) 2011 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "TestPileup.h"
void testPileup()
{
TestPileup pileupTest;
pileupTest.testPileupPosition();
}
void TestPileupElement::analyze()
{
assert(strcmp(getChromosome(), "") == 0);
assert(getRefPosition() == 14000);
}
void TestPileup::testPileupPosition()
{
assert(pileupPosition(14000) == 0);
assert(pileupHead == 14000);
assert(pileupStart == 14000);
assert(pileupTail == 14000);
bool caught = false;
try
{
pileupPosition(13999);
}
catch(std::exception& e)
{
caught = true;
assert(strcmp(e.what(), "Overflow on the pileup buffer: specifiedPosition = 13999, pileup buffer start position: 14000, pileup buffer end position: 15024") == 0);
}
assert(caught);
caught = false;
try
{
pileupPosition(15025);
}
catch(std::exception& e)
{
caught = true;
assert(strcmp(e.what(), "Overflow on the pileup buffer: specifiedPosition = 15025, pileup buffer start position: 14000, pileup buffer end position: 15024") == 0);
}
assert(caught);
}
PileupElement::getChromosome
const char * getChromosome() const
Get the chromosome name stored in this element.
Definition: PileupElement.h:51
PileupElement::getRefPosition
int32_t getRefPosition() const
Get the reference position stored in this element.
Definition: PileupElement.h:54
TestPileupElement::analyze
virtual void analyze()
Perform the analysis associated with this class.
Definition: TestPileup.cpp:25
TestPileup
Definition: TestPileup.h:33