SamFilter Member List

This is the complete list of members for SamFilter, including all inherited members.

clipOnMismatchThreshold(SamRecord &record, GenomeSequence &refSequence, double mismatchThreshold) | SamFilter | static
CLIPPED enum value | SamFilter |
FILTERED enum value | SamFilter |
filterOnMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint32_t qualityThreshold, uint8_t defaultQualityInt) | SamFilter | static
filterRead(SamRecord &record) | SamFilter | static
FilterStatus enum name | SamFilter |
NONE enum value | SamFilter |
softClip(SamRecord &record, int32_t numFrontClips, int32_t numBackClips) | SamFilter | static
softClip(Cigar &oldCigar, int32_t numFrontClips, int32_t numBackClips, int32_t &startPos, CigarRoller &updatedCigar) | SamFilter | static
sumMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint8_t defaultQualityInt) | SamFilter | static