### - i -

- ifclose() : InputFile
- ifeof() : InputFile
- ifgetc() : InputFile
- ifgetline() : InputFile
- ifread() : InputFile
- ifrewind() : InputFile
- ifseek() : InputFile
- iftell() : InputFile
- ifwrite() : InputFile
- incrementCount() : BaseCount
- IncrementCount() : CigarRoller
- InputFile() : InputFile
- inRegion() : NonOverlapRegionPos , NonOverlapRegions
- interleaved() : FastQFile
- interval() : Timing
- isActiveHeaderRecord() : SamHeaderRecord
- isAmbiguous() : BaseUtilities
- isCharType() : SamRecord
- isClip() : Cigar
- isColorSpace() : GenomeSequence
- isContinuableStatus() : GlfStatus , StatGenStatus
- isEof() : FastQFile
- isEOF() : GlfFile
- IsEOF() : SamFile
- isFirstFragment() : SamFlag
- isFloatType() : SamRecord
- isIntegerType() : SamRecord
- isLastFragment() : SamFlag
- isMatchOrMismatch() : Cigar
- isMDTagCorrect() : SamTags
- isMidFragment() : SamFlag
- isOpen() : FastQFile , InputFile
- IsOpen() : SamFile
- IsStream() : SamFile
- isStringType() : SamRecord
- isUnknownFragment() : SamFlag
- isValid() : SamHeaderRecord , SamRecord , SamValidator
- isValid1BasedPos() : SamValidator
- isValidCigar() : SamValidator
- isValidFlag() : SamValidator
- isValidIsize() : SamValidator
- isValidMapQuality() : SamValidator
- isValidMpos() : SamValidator
- isValidMrnm() : SamValidator
- isValidQname() : SamValidator
- isValidQuality() : SamValidator
- isValidRefID() : SamValidator
- isValidRname() : SamValidator
- isValidSeq() : SamValidator
- isValidSequence() : SamValidator
- isValidTags() : SamValidator
- isValidValue() : SamValidator
- isValidVtype() : SamValidator