glfHandler Member List

This is the complete list of members for glfHandler, including all inherited members.

BeginSection(const String &sectionLabel, int sectionLength) (defined in glfHandler) | glfHandler |
Close() (defined in glfHandler) | glfHandler |
Create(const String &filename) (defined in glfHandler) | glfHandler |
currentSection (defined in glfHandler) | glfHandler |
data (defined in glfHandler) | glfHandler |
endOfSection (defined in glfHandler) | glfHandler |
EndSection() (defined in glfHandler) | glfHandler |
errorMsg (defined in glfHandler) | glfHandler |
GenotypeIndex(int base1, int base2) (defined in glfHandler) | glfHandler | inline static
GetDefaultLikelihoods() (defined in glfHandler) | glfHandler | inline static
GetDefaultLogLikelihoods() (defined in glfHandler) | glfHandler | inline static
GetDepth(int position) (defined in glfHandler) | glfHandler |
GetLikelihoods(int position) (defined in glfHandler) | glfHandler |
GetLogLikelihoods(int position) (defined in glfHandler) | glfHandler |
GetMapQuality(int position) (defined in glfHandler) | glfHandler |
GetReference(int position, char defaultBase) (defined in glfHandler) | glfHandler |
glfHandler() (defined in glfHandler) | glfHandler |
handle (defined in glfHandler) | glfHandler |
header (defined in glfHandler) | glfHandler |
indelSequence (defined in glfHandler) | glfHandler |
isOpen() (defined in glfHandler) | glfHandler |
isStub (defined in glfHandler) | glfHandler |
label (defined in glfHandler) | glfHandler |
likelihoods (defined in glfHandler) | glfHandler |
maxPosition (defined in glfHandler) | glfHandler |
NextBaseEntry() (defined in glfHandler) | glfHandler |
NextEntry() (defined in glfHandler) | glfHandler |
NextSection() (defined in glfHandler) | glfHandler |
Open(const String &filename) (defined in glfHandler) | glfHandler |
OpenStub() (defined in glfHandler) | glfHandler |
position (defined in glfHandler) | glfHandler |
Rewind() (defined in glfHandler) | glfHandler |
sections (defined in glfHandler) | glfHandler |
WriteEntry(int outputPosition) (defined in glfHandler) | glfHandler |
~glfHandler() (defined in glfHandler) | glfHandler |