PedigreeDescription Member List

This is the complete list of members for PedigreeDescription, including all inherited members.

AddAffectionColumn(const char *affectionName) (defined in PedigreeDescription) | PedigreeDescription |
AddCovariateColumn(const char *covariateName) (defined in PedigreeDescription) | PedigreeDescription |
AddMarkerColumn(const char *markerName) (defined in PedigreeDescription) | PedigreeDescription |
AddSkippedColumn() (defined in PedigreeDescription) | PedigreeDescription |
AddStringColumn(const char *stringName) (defined in PedigreeDescription) | PedigreeDescription |
AddTraitColumn(const char *traitName) (defined in PedigreeDescription) | PedigreeDescription |
AddZygosityColumn() (defined in PedigreeDescription) | PedigreeDescription |
affectionCount (defined in PedigreeGlobals) | PedigreeGlobals | static
affectionLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
affectionNames (defined in PedigreeGlobals) | PedigreeGlobals | static
AlleleFrequenciesAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | static
chromosomeX (defined in PedigreeGlobals) | PedigreeGlobals | static
columnCount (defined in PedigreeDescription) | PedigreeDescription |
columnHash (defined in PedigreeDescription) | PedigreeDescription |
columns (defined in PedigreeDescription) | PedigreeDescription |
ColumnSummary(String &string) (defined in PedigreeDescription) | PedigreeDescription |
CountTextColumns() (defined in PedigreeDescription) | PedigreeDescription |
covariateCount (defined in PedigreeGlobals) | PedigreeGlobals | static
covariateLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
covariateNames (defined in PedigreeGlobals) | PedigreeGlobals | static
filename (defined in PedigreeDescription) | PedigreeDescription |
FlagMissingMarkers(IntArray &missingMarkers) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetAffectionID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetCovariateID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetMarkerID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetMarkerInfo(String &name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetMarkerInfo(int marker) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetOrderedMarkers(IntArray &markers) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetStringID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GetTraitID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | static
GrowMarkerInfo() (defined in PedigreeGlobals) | PedigreeGlobals | static
Load(IFILE &Input, bool warnIfLinkage=false) (defined in PedigreeDescription) | PedigreeDescription |
Load(const char *filename, bool warnIfLinkage=false) (defined in PedigreeDescription) | PedigreeDescription |
LoadAllele(int marker, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadAllele(MarkerInfo *info, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadAlleleFrequencies(const char *filename, bool required=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadAlleleFrequencies(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadBasepairMap(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadBasepairMap(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadLinkageDataFile(IFILE &input) (defined in PedigreeDescription) | PedigreeDescription |
LoadLinkageDataFile(const char *filename) (defined in PedigreeDescription) | PedigreeDescription |
LoadMap(IFILE &Input) (defined in PedigreeDescription) | PedigreeDescription |
LoadMap(const char *filename) (defined in PedigreeDescription) | PedigreeDescription |
LoadMarkerMap(const char *filename, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadMarkerMap(IFILE &file, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
LoadMendelDataFile(IFILE &input) (defined in PedigreeDescription) | PedigreeDescription |
LoadMendelDataFile(const char *filename) (defined in PedigreeDescription) | PedigreeDescription |
LookupAffection(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupCovariate(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupMarker(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupString(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
LookupTrait(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | inline static
markerCount (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfo (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoByInteger (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoByName (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoCount (defined in PedigreeGlobals) | PedigreeGlobals | static
markerInfoSize (defined in PedigreeGlobals) | PedigreeGlobals | static
markerLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
markerNames (defined in PedigreeGlobals) | PedigreeGlobals | static
MarkerPositionsAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | static
mendelFormat (defined in PedigreeDescription) | PedigreeDescription |
operator=(PedigreeDescription &rhs) (defined in PedigreeDescription) | PedigreeDescription |
PedigreeDescription() (defined in PedigreeDescription) | PedigreeDescription |
PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals | inline
sexSpecificMap (defined in PedigreeGlobals) | PedigreeGlobals | static
SortMarkersInMapOrder(IntArray &markers, int chromosome=-1) (defined in PedigreeGlobals) | PedigreeGlobals | static
stringCount (defined in PedigreeGlobals) | PedigreeGlobals | static
stringLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
stringNames (defined in PedigreeGlobals) | PedigreeGlobals | static
traitCount (defined in PedigreeGlobals) | PedigreeGlobals | static
traitLookup (defined in PedigreeGlobals) | PedigreeGlobals | static
traitNames (defined in PedigreeGlobals) | PedigreeGlobals | static
VerifySexSpecificOrder() (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteFreqFile(const char *filename, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteFreqFile(FILE *file, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteMapFile(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | static
WriteMapFile(FILE *file) (defined in PedigreeGlobals) | PedigreeGlobals | static
~PedigreeDescription() (defined in PedigreeDescription) | PedigreeDescription |
~PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals |