digraph "SamFileReader"
{
 // LATEX_PDF_SIZE
  edge [fontname="FreeSans",fontsize="10",labelfontname="FreeSans",labelfontsize="10"];
  node [fontname="FreeSans",fontsize="10",shape=record];
  rankdir="LR";
  Node1 [label="SamFileReader",height=0.2,width=0.4,color="black", fillcolor="grey75", style="filled", fontcolor="black",tooltip="Child class of SamFile for reading files."];
  Node2 -> Node1 [dir="back",color="midnightblue",fontsize="10",style="solid",fontname="FreeSans"];
  Node2 [label="SamFile",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classSamFile.html",tooltip="Allows the user to easily read/write a SAM/BAM file."];
  Node3 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myStatus" ,fontname="FreeSans"];
  Node3 [label="StatGenStatus",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classStatGenStatus.html",tooltip="This class is used to track the status results of some methods in the BAM classes."];
  Node4 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myPrevReadName" ,fontname="FreeSans"];
  Node4 [label="String",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classString.html",tooltip=" "];
  Node5 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myBamIndex" ,fontname="FreeSans"];
  Node5 [label="BamIndex",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classBamIndex.html",tooltip=" "];
  Node6 -> Node5 [dir="back",color="midnightblue",fontsize="10",style="solid",fontname="FreeSans"];
  Node6 [label="IndexBase",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classIndexBase.html",tooltip=" "];
  Node7 -> Node6 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myRefs" ,fontname="FreeSans"];
  Node7 [label="std::vector\< IndexBase\l::Reference \>",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",tooltip=" "];
  Node8 -> Node7 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" elements" ,fontname="FreeSans"];
  Node8 [label="IndexBase::Reference",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classIndexBase_1_1Reference.html",tooltip=" "];
  Node9 -> Node8 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" bins" ,fontname="FreeSans"];
  Node9 [label="std::vector\< IndexBase\l::Bin \>",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",tooltip=" "];
  Node10 -> Node9 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" elements" ,fontname="FreeSans"];
  Node10 [label="IndexBase::Bin",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classIndexBase_1_1Bin.html",tooltip=" "];
  Node11 -> Node10 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" chunks" ,fontname="FreeSans"];
  Node11 [label="Chunk",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classChunk.html",tooltip=" "];
  Node12 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myStatistics" ,fontname="FreeSans"];
  Node12 [label="SamStatistics",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classSamStatistics.html",tooltip=" "];
  Node13 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myFilePtr" ,fontname="FreeSans"];
  Node13 [label="InputFile",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classInputFile.html",tooltip="Class for easily reading/writing files without having to worry about file type (uncompressed,..."];
  Node14 -> Node13 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myFileName" ,fontname="FreeSans"];
  Node14 [label="std::string",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",tooltip=" "];
  Node15 -> Node14 [dir="back",color="midnightblue",fontsize="10",style="solid",fontname="FreeSans"];
  Node15 [label="std::basic_string\<\l Char \>",height=0.2,width=0.4,color="grey75", fillcolor="white", style="filled",tooltip=" "];
  Node16 -> Node13 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myFileTypePtr" ,fontname="FreeSans"];
  Node16 [label="FileType",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classFileType.html",tooltip=" "];
  Node14 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myRefName" ,fontname="FreeSans"];
  Node17 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myRefPtr" ,fontname="FreeSans"];
  Node17 [label="GenomeSequence",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classGenomeSequence.html",tooltip="Create/Access/Modify/Load Genome Sequences stored as binary mapped files."];
  Node18 -> Node17 [dir="back",color="midnightblue",fontsize="10",style="solid",fontname="FreeSans"];
  Node18 [label="genomeSequenceArray",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classMemoryMapArray.html",tooltip=" "];
  Node19 -> Node18 [dir="back",color="midnightblue",fontsize="10",style="solid",fontname="FreeSans"];
  Node19 [label="MemoryMap",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classMemoryMap.html",tooltip="There are a pair of related data structures in the operating system, and also a few simple algorithms..."];
  Node14 -> Node18 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" errorStr" ,fontname="FreeSans"];
  Node20 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myInterfacePtr" ,fontname="FreeSans"];
  Node20 [label="GenericSamInterface",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classGenericSamInterface.html",tooltip=" "];
  Node21 -> Node2 [dir="back",color="darkorchid3",fontsize="10",style="dashed",label=" myChunksToRead" ,fontname="FreeSans"];
  Node21 [label="SortedChunkList",height=0.2,width=0.4,color="black", fillcolor="white", style="filled",URL="$classSortedChunkList.html",tooltip=" "];
}
