### - r -

- read() : GlfHeader , GlfRecord , GlfRefSection
- ReadBamIndex() : SamFile
- readFastQSequence() : FastQFile
- readHeader() : GlfFile
- ReadHeader() : SamFile
- readIndex() : BamIndex , IndexBase , Tabix
- readLine() : InputFile
- ReadRecord() : SamFile
- readTilChar() : InputFile
- readTilTab() : InputFile
- releaseRecord() : SamRecordPool
- Remove() : CigarRoller
- removeHD() : SamFileHeader
- removePG() : SamFileHeader
- removeRG() : SamFileHeader
- removeSQ() : SamFileHeader
- reset() : GlfRecord , GlfStatus , PileupElement , PileupElementBaseQual , ReusableVector< DATA_TYPE > , SamHeaderRecord , SamQuerySeqWithRefIter , StatGenStatus
- resetBaseMapType() : BaseAsciiMap , BaseComposition
- resetCommentIter() : SamFileHeader
- resetErrorIter() : SamValidationErrors
- resetFile() : SamFile
- resetHeader() : GlfHeader , SamFileHeader
- resetHeaderRecordIter() : SamFileHeader
- resetIndex() : BamIndex , IndexBase , Tabix
- resetPGRecordIter() : SamFileHeader
- resetPrimerCount() : BaseAsciiMap
- resetRecord() : SamRecord
- resetRefSection() : GlfRefSection
- resetRGRecordIter() : SamFileHeader
- resetSQRecordIter() : SamFileHeader
- resetTagIter() : SamRecord
- rmTag() : SamRecord
- rmTags() : SamRecord