ReadFiles.h
/*
* Copyright (C) 2010 Regents of the University of Michigan
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "SamFile.h"
void testReadSam();
void testReadBam();
void testRead(SamFile &inSam);
void testAddHeaderAndTagToFile(const char* inputName, const char* outputName);
void testValidateSortedRead();
void validateRead1ModQuality(SamRecord& samRecord);
void testModHeader(SamFileHeader& samHeader);
void testFlagRead(const char* fileName);
void testCopyHeader(SamFileHeader& samHeader);
SamFileHeader
This class allows a user to get/set the fields in a SAM/BAM Header.
Definition: SamFileHeader.h:34
SamRecord
Class providing an easy to use interface to get/set/operate on the fields in a SAM/BAM record.
Definition: SamRecord.h:51
SamFile
Allows the user to easily read/write a SAM/BAM file.
Definition: SamFile.h:35