blast-parser-driver.h
rostlab/
blast-parser-driver_8h.html
rostlab/blast-parser-parser.h
rostlab/blast-result.h
rostlab::blast::parser_error
rostlab::blast::parser_driver
rostlab
rostlab::blast
- #define YY_DECL blast-parser-driver_8h.html ae5b01ac2fa5a6ad5fb97559638abe686
- #define YY_DECL_FRIEND blast-parser-driver_8h.html a42a0bbb9c998707636151907fae15873
- YY_DECL
  blast-parser-driver_8h.html
  abcefb20c54ce0f92452cfbb9cf657670
blast-parser-location.h
rostlab/
blast-parser-location_8h.html
rostlab::blast::position
rostlab::blast::location
rostlab
rostlab::blast
- #define YY_NULLPTR blast-parser-location_8h.html a5a6c82f7ce4ad9cc8c6c08b7a2de5b84
blast-parser-parser.h
rostlab/
blast-parser-parser_8h.html
rostlab/blast-result.h
rostlab/blast-parser-location.h
rostlab::blast::parser
rostlab::blast::parser::value_type
rostlab::blast::parser::syntax_error
rostlab::blast::parser::token
rostlab::blast::parser::symbol_kind
rostlab::blast::parser::basic_symbol
rostlab::blast::parser::by_kind
rostlab::blast::parser::symbol_type
rostlab::blast::parser::context
rostlab::blast::parser::stack::slice
rostlab
rostlab::blast
- #define YY_CPLUSPLUS blast-parser-parser_8h.html a2c2dc185807321e4cc1be9362787266f
- #define YY_MOVE blast-parser-parser_8h.html add6c8aaf72021a02759ca5aae05694da
- #define YY_MOVE_OR_COPY blast-parser-parser_8h.html a0b80dc025f1883a147e79d45278a088b
- #define YY_MOVE_REF blast-parser-parser_8h.html a5acee687e2d12ed695b3d6d30b8bf5d5 (Type)
- #define YY_RVREF blast-parser-parser_8h.html a136a1225ab9f41786793cf23145b58dd (Type)
- #define YY_COPY blast-parser-parser_8h.html a5a0fd70f778dbbab452e5a526ce56049 (Type)
- #define YY_NOEXCEPT blast-parser-parser_8h.html a986b895e8d279ff24380891c280bc9f4
- #define YY_NOTHROW blast-parser-parser_8h.html af3672105a94e399b66c50d40fb6de643
- #define YY_CONSTEXPR blast-parser-parser_8h.html a02ac17d462dd0644526bc88fe037e15d
- #define YY_ATTRIBUTE_PURE blast-parser-parser_8h.html ad1405f082b8df6353a9d53c9709c4d03
- #define YY_ATTRIBUTE_UNUSED blast-parser-parser_8h.html ab312a884bd41ff11bbd1aa6c1a0e1b0a
- #define YY_USE blast-parser-parser_8h.html afd165b6b23a4fb227c4ecbc2c9a746cb (E)
- #define YY_INITIAL_VALUE blast-parser-parser_8h.html a6d890db48971847b837a6a1397c9059a (Value)
- #define YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN blast-parser-parser_8h.html a145ddbb780f86b5f35ddfffb23e62d4d
- #define YY_IGNORE_MAYBE_UNINITIALIZED_END blast-parser-parser_8h.html a2b2abbe8d335b7933a69ac2f05a015d2
- #define YY_IGNORE_USELESS_CAST_BEGIN blast-parser-parser_8h.html a80d1607dba7679ec5b82303d36ec4c9e
- #define YY_IGNORE_USELESS_CAST_END blast-parser-parser_8h.html a2faf73c0e75243966cbdad0ede982584
- #define YY_CAST blast-parser-parser_8h.html a4b53a97e60d84c765592be332ef6adce (Type, Val)
- #define YY_REINTERPRET_CAST blast-parser-parser_8h.html ad56e31fec1bf5fadf90c0ff7f13b0020 (Type, Val)
- #define YY_NULLPTR blast-parser-parser_8h.html a5a6c82f7ce4ad9cc8c6c08b7a2de5b84
- #define YYDEBUG blast-parser-parser_8h.html a853b3bfad6d2b2ff693dce81182e0c2e
blast-parser-position.h
rostlab/
blast-parser-position_8h.html
rostlab/blast-parser-location.h
blast-parser-stack.h
rostlab/
blast-parser-stack_8h.html
blast-result.h
rostlab/
blast-result_8h.html
rostlab::blast::round
rostlab::blast::hsp
rostlab::blast::hit
rostlab::blast::oneline
rostlab::blast::result
rostlab
rostlab::blast
rostlab::blast::parser::basic_symbol
structrostlab_1_1blast_1_1parser_1_1basic__symbol.html
typename Base
- Base super_type structrostlab_1_1blast_1_1parser_1_1basic__symbol.html aa724a3b9f54c9c957fde3f900f944210
- basic_symbol
  structrostlab_1_1blast_1_1parser_1_1basic__symbol.html
  ac822dfd83cd4130b46ae096bdbfa27f0
  () YY_NOEXCEPT
- basic_symbol
  structrostlab_1_1blast_1_1parser_1_1basic__symbol.html
  abd4d2cd1c33e17ec3e813927770dbb83
  (const basic_symbol &that)
- basic_symbol
  structrostlab_1_1blast_1_1parser_1_1basic__symbol.html
  a1c4db38a2f297d9fd22450e628a0a63e
  (typename Base::kind_type t, YY_MOVE_REF(location_type) l)
- basic_symbol
  structrostlab_1_1blast_1_1parser_1_1basic__symbol.html
  a8be9c6ba790f11ab2072a652581dff45
  (typename Base::kind_type t, YY_RVREF(value_type) v, YY_RVREF(location_type) l)
- ~basic_symbol
  structrostlab_1_1blast_1_1parser_1_1basic__symbol.html
  ad1b6c7dece025b3d392a741d966df807
  ()
- void clear structrostlab_1_1blast_1_1parser_1_1basic__symbol.html aef84e13d96eb68eca19dc3480dee308e () YY_NOEXCEPT
- std::string name structrostlab_1_1blast_1_1parser_1_1basic__symbol.html a3aaffb8ef5134a4882d1077cbc82ad96 () const YY_NOEXCEPT
- symbol_kind_type type_get structrostlab_1_1blast_1_1parser_1_1basic__symbol.html a53d461a7e4f815246434bfd0f77a0a57 () const YY_NOEXCEPT
- bool empty structrostlab_1_1blast_1_1parser_1_1basic__symbol.html ad9f9735014c965caafa312c6a69ddd36 () const YY_NOEXCEPT
- void move structrostlab_1_1blast_1_1parser_1_1basic__symbol.html a1f084ec9758fab85cdba51f196f0f8c1 (basic_symbol &s)
- value_type value structrostlab_1_1blast_1_1parser_1_1basic__symbol.html a67b8d58cda28ed512e8deac9456536c7
- location_type location structrostlab_1_1blast_1_1parser_1_1basic__symbol.html a835a901b0764aff02b6685ccab294ab4
rostlab::blast::parser::by_kind
structrostlab_1_1blast_1_1parser_1_1by__kind.html
- token_kind_type kind_type structrostlab_1_1blast_1_1parser_1_1by__kind.html ad5cbfd3f4c6c88d707d61f73a2f6b61b
- by_kind
  structrostlab_1_1blast_1_1parser_1_1by__kind.html
  a4e7848112baa56f3b8c62bb6f2baf364
  () YY_NOEXCEPT
- by_kind
  structrostlab_1_1blast_1_1parser_1_1by__kind.html
  a67ca0e078ca7bcb2f31eaa4780428343
  (const by_kind &that) YY_NOEXCEPT
- by_kind
  structrostlab_1_1blast_1_1parser_1_1by__kind.html
  a867f480a2c18d9c34adf486e264a02d0
  (kind_type t) YY_NOEXCEPT
- void clear structrostlab_1_1blast_1_1parser_1_1by__kind.html a29fa78125c5dc9149fb9f8c0eb26b8d5 () YY_NOEXCEPT
- void move structrostlab_1_1blast_1_1parser_1_1by__kind.html a3849e7e7c1ba3829a3d9a227a5da0501 (by_kind &that)
- symbol_kind_type kind structrostlab_1_1blast_1_1parser_1_1by__kind.html a3dfcc34a8b5e690cd69bd22e71013a6e () const YY_NOEXCEPT
- symbol_kind_type type_get structrostlab_1_1blast_1_1parser_1_1by__kind.html aa1579635ff0416dd53c5dff66f3d7c4e () const YY_NOEXCEPT
- symbol_kind_type kind_ structrostlab_1_1blast_1_1parser_1_1by__kind.html a63c253a779387becd4d76c91d0c109fc
rostlab::blast::parser::context
classrostlab_1_1blast_1_1parser_1_1context.html
- context
  classrostlab_1_1blast_1_1parser_1_1context.html
  aca7bc509fb48f70811a8f569de3f4d80
  (const parser &yyparser, const symbol_type &yyla)
- const symbol_type & lookahead classrostlab_1_1blast_1_1parser_1_1context.html af1e0e6db7c2924b934ae71341e26d273 () const YY_NOEXCEPT
- symbol_kind_type token classrostlab_1_1blast_1_1parser_1_1context.html af70e8056c672f09c09cee2f7e30c5778 () const YY_NOEXCEPT
- const location_type & location classrostlab_1_1blast_1_1parser_1_1context.html af426f7006ad3bea618c8ee91200f872c () const YY_NOEXCEPT
- int expected_tokens classrostlab_1_1blast_1_1parser_1_1context.html ad7e29643d74b0625770886a2360a257a (symbol_kind_type yyarg[], int yyargn) const
rostlab::blast::hit
structrostlab_1_1blast_1_1hit.html
- hit
  structrostlab_1_1blast_1_1hit.html
  a7847e0f5d63534eb5f8908a5d9e043cb
  (const std::string &__name="", const std::string &__desc="", size_t __length=0)
- virtual ~hit structrostlab_1_1blast_1_1hit.html a64797840c95a52f0180d1aece620377e ()
- std::string name structrostlab_1_1blast_1_1hit.html af0f70425cc41a304b6bdbe3b0dcdb7a1
- std::string desc structrostlab_1_1blast_1_1hit.html a65744ca4d3e6bce16e4adae1bbb696bb
- size_t length structrostlab_1_1blast_1_1hit.html aa8228dc11dcf6b5c8bbf988a5a3c9a9e
- std::vector< hsp > hsps structrostlab_1_1blast_1_1hit.html ac8f7bd3ac9148992a66c067578fb3d58
rostlab::blast::hsp
structrostlab_1_1blast_1_1hsp.html
- ECompoAdjustModes
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7
- eNoCompositionBasedStats
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7a2c12e463539311bc01711c4a109401f3
- eCompositionBasedStats
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7adff245e5ac6c80ba48fb8ee5b130f3eb
- eCompositionMatrixAdjust
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7a9487b2a7f0e25c718d8fdad9e35a06fd
- eCompoForceFullMatrixAdjust
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7aed59ef0cae7de111307257cabf1b7ff1
- eNumCompoAdjustModes
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7abb9bf00308b59a31b1315399488a01db
- enum rostlab::blast::hsp::ECompoAdjustModes ECompoAdjustModes structrostlab_1_1blast_1_1hsp.html a85d9a5ec15780ff2781196ae124be11d
- eNoCompositionBasedStats
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7a2c12e463539311bc01711c4a109401f3
- eCompositionBasedStats
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7adff245e5ac6c80ba48fb8ee5b130f3eb
- eCompositionMatrixAdjust
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7a9487b2a7f0e25c718d8fdad9e35a06fd
- eCompoForceFullMatrixAdjust
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7aed59ef0cae7de111307257cabf1b7ff1
- eNumCompoAdjustModes
  structrostlab_1_1blast_1_1hsp.html
  acf0abaa669acd23fc4a0038e194041d7abb9bf00308b59a31b1315399488a01db
- hsp
  structrostlab_1_1blast_1_1hsp.html
  af82dd84c1d093225de32776f35314bd5
  (double __bit_score=0, size_t __raw_score=0)
- virtual ~hsp structrostlab_1_1blast_1_1hsp.html ad648a0d22b886a1f51e0758aaedc1541 ()
- double bit_score structrostlab_1_1blast_1_1hsp.html a418d58f03289123bc97314aa28612bce
- size_t raw_score structrostlab_1_1blast_1_1hsp.html aaf207b4f63e9bcd357b2829affea1e2a
- double e_value structrostlab_1_1blast_1_1hsp.html a283e1f3a5819dc8d5240e74fd8316f1f
- ECompoAdjustModes method structrostlab_1_1blast_1_1hsp.html ae343db2eb236c2177c94c20d75f41595
- size_t identities structrostlab_1_1blast_1_1hsp.html adf63035ce02240a58d8656c32cf015e9
- size_t positives structrostlab_1_1blast_1_1hsp.html a02edceb41106dd8245f8fcb32e0caf03
- size_t gaps structrostlab_1_1blast_1_1hsp.html a8f23027eb2902176f5ecb74574c3f3d9
- std::string q_strand structrostlab_1_1blast_1_1hsp.html ae052c615e50b7902cead8934d65d8b54
- std::string s_strand structrostlab_1_1blast_1_1hsp.html a1a478153a91dc88cda04a6be5b5c2e02
- int8_t q_frame structrostlab_1_1blast_1_1hsp.html a3b2f013e9803afa48172664d5da386b6
- int8_t s_frame structrostlab_1_1blast_1_1hsp.html aa4cfa870754ec2243878cd5ae7c885c2
- size_t q_start structrostlab_1_1blast_1_1hsp.html ab9636d83143b4e38d8b4f4d162374dd9
- std::string q_ali structrostlab_1_1blast_1_1hsp.html a587c9b737149284390266fd7eb3aae90
- size_t q_end structrostlab_1_1blast_1_1hsp.html a50994b17ac23cf302100fd2991d2644f
- std::string match_line structrostlab_1_1blast_1_1hsp.html a8662fd5b2c93832bbdeb23adea298a8c
- size_t s_start structrostlab_1_1blast_1_1hsp.html a6767b36cc92cda9a904b0fc249404bde
- std::string s_ali structrostlab_1_1blast_1_1hsp.html ad2f87e9740abec41b6e52201b0eadda5
- size_t s_end structrostlab_1_1blast_1_1hsp.html a22cea63cd8cf103574a605d8b90f4c50
rostlab::blast::location
classrostlab_1_1blast_1_1location.html
- position::filename_type filename_type classrostlab_1_1blast_1_1location.html a378deb74ced8781be9da2dd371ddad36
- position::counter_type counter_type classrostlab_1_1blast_1_1location.html a4b3cf7eb1f097a70fea5d90f22546521
- location
  classrostlab_1_1blast_1_1location.html
  af6d924f44f2ce388e92f55926777cde6
  (const position &b, const position &e)
- location
  classrostlab_1_1blast_1_1location.html
  a6577b8b59e6517239c948c383634f8a4
  (const position &p=position())
- location
  classrostlab_1_1blast_1_1location.html
  af46ba5338225ed31a05c8f68aa34beee
  (filename_type *f, counter_type l=1, counter_type c=1)
- void initialize classrostlab_1_1blast_1_1location.html a6850e49bb91da2f70ceaf13af037537b (filename_type *f=YY_NULLPTR, counter_type l=1, counter_type c=1)
- void step classrostlab_1_1blast_1_1location.html aa1047e1bbc1b332a5120571651dcaf43 ()
- void columns classrostlab_1_1blast_1_1location.html ad40648b44f6299fa0ad6cb24fc30c652 (counter_type count=1)
- void lines classrostlab_1_1blast_1_1location.html a4e55550f04406b649d994170fc928412 (counter_type count=1)
- position begin classrostlab_1_1blast_1_1location.html a1c8659068335bbe02b153363c6f3934c
- position end classrostlab_1_1blast_1_1location.html ab42c2a96611bc78b2a50d61b5966dc74
- void step classrostlab_1_1blast_1_1location.html aa1047e1bbc1b332a5120571651dcaf43 ()
- void columns classrostlab_1_1blast_1_1location.html ad40648b44f6299fa0ad6cb24fc30c652 (counter_type count=1)
- void lines classrostlab_1_1blast_1_1location.html a4e55550f04406b649d994170fc928412 (counter_type count=1)
rostlab::blast::oneline
structrostlab_1_1blast_1_1oneline.html
- oneline
  structrostlab_1_1blast_1_1oneline.html
  ad96e0307e8e645dfe3aba5d7aadd5e7e
  (const std::string &__name="", const std::string &__desc="", double __bit_score=0, double __e_value=0)
- oneline
  structrostlab_1_1blast_1_1oneline.html
  a5dacf3503b1c90cc3a381356e6b4d5e7
  (const hit &__h)
- virtual ~oneline structrostlab_1_1blast_1_1oneline.html ab98dfee5b8690fe1257c47164b182f93 ()
- std::string name structrostlab_1_1blast_1_1oneline.html a3fbcd78ceac1b92d2d16bcb73ed09a7f
- std::string desc structrostlab_1_1blast_1_1oneline.html afaf02fa6e84bfaad7fc5d8bf26cc314f
- double bit_score structrostlab_1_1blast_1_1oneline.html a3cfca57c6ded9a2daa9ce77e0f004040
- double e_value structrostlab_1_1blast_1_1oneline.html a12cf72720d730b7bdfa93521b4d3b933
rostlab::blast::parser
classrostlab_1_1blast_1_1parser.html
rostlab::blast::parser::value_type
rostlab::blast::parser::syntax_error
rostlab::blast::parser::token
rostlab::blast::parser::symbol_kind
rostlab::blast::parser::basic_symbol
rostlab::blast::parser::by_kind
rostlab::blast::parser::symbol_type
rostlab::blast::parser::context
- value_type semantic_type classrostlab_1_1blast_1_1parser.html a52f751db364a3eb9ce44e429f648d179
- location location_type classrostlab_1_1blast_1_1parser.html af95337865cee8404adeeffd24b80b822
- token::token_kind_type token_kind_type classrostlab_1_1blast_1_1parser.html ab4dbf3b6a87a795ba1594a8574eeba4f
- token_kind_type token_type classrostlab_1_1blast_1_1parser.html aa7ab56cc7d7cd13a147a46d42db52120
- symbol_kind::symbol_kind_type symbol_kind_type classrostlab_1_1blast_1_1parser.html a6dc497045a934e54fbae8461b33ca1f3
- by_kind by_type classrostlab_1_1blast_1_1parser.html aafba59964a1ca19fc29de6003d194a14
- int debug_level_type classrostlab_1_1blast_1_1parser.html afb2387d69c8024aa0173fcd78c0029f3
- parser
  classrostlab_1_1blast_1_1parser.html
  a2d64c740277a5dde38fc5bd0522a580b
  (rostlab::blast::parser_driver &drv_yyarg, void *yyscanner_yyarg)
- virtual ~parser classrostlab_1_1blast_1_1parser.html afc6e55364c101701c0f4849caae7fab4 ()
- int operator() classrostlab_1_1blast_1_1parser.html ae8a7ad48b63556fb7af22de1dec44ed6 ()
- virtual int parse classrostlab_1_1blast_1_1parser.html abe30c76f148d07a83796df308c3b53fb ()
- std::ostream & debug_stream classrostlab_1_1blast_1_1parser.html a19222b4c862a43759580ffd645f5ac44 () const YY_ATTRIBUTE_PURE
- void set_debug_stream classrostlab_1_1blast_1_1parser.html a2af3db1272ce63126ee89526d00f735c (std::ostream &)
- debug_level_type debug_level classrostlab_1_1blast_1_1parser.html a9ce5c73cdc0e3aa843d64e9f07df3daa () const YY_ATTRIBUTE_PURE
- void set_debug_level classrostlab_1_1blast_1_1parser.html aca5beafd0b9d5c7ea14070370fe517c3 (debug_level_type l)
- virtual void error classrostlab_1_1blast_1_1parser.html a859b9ebcf2d0616cd10040126d076402 (const location_type &loc, const std::string &msg)
- void error classrostlab_1_1blast_1_1parser.html a10e3ec16d99b6ed2cc598e5f9994e97b (const syntax_error &err)
- static std::string symbol_name classrostlab_1_1blast_1_1parser.html abfa701a19aa69b6e4bddd586c9326219 (symbol_kind_type yysymbol)
- static const symbol_kind_type YYNTOKENS classrostlab_1_1blast_1_1parser.html ae17960c371ef5dc75350fddf4dbecfb3
rostlab::blast::parser_driver
classrostlab_1_1blast_1_1parser__driver.html
- rostlab::blast::result result_type classrostlab_1_1blast_1_1parser__driver.html aa4a066d4b51108c2aa2896e8fed77951
- parser_driver
  classrostlab_1_1blast_1_1parser__driver.html
  a7e9da8fb3b298b04f247856af3220b8d
  (FILE *__istream=stdin, const std::string &__istream_name="stdin")
- virtual ~parser_driver classrostlab_1_1blast_1_1parser__driver.html aaaef30dfc4eb6380652d4d73e9c6ecb8 ()
- const result_type & parse classrostlab_1_1blast_1_1parser__driver.html a1b9987063df2441c04d90530683efefd (bool __trace_parsing=false, bool __trace_scanning=false)
- bool trace_scanning classrostlab_1_1blast_1_1parser__driver.html a7ddd0675ea0ea0b7aa11dd96c19f2c21 ()
- void trace_scanning classrostlab_1_1blast_1_1parser__driver.html a3998eaca18e47f88768182503d716b85 (bool __b)
- void error classrostlab_1_1blast_1_1parser__driver.html a4720c3dfb131281b524172dc3152eaad (const rostlab::blast::location &__loc, const std::string __msg)
- void error classrostlab_1_1blast_1_1parser__driver.html a789b10a889c9c4127dc8174494b6672d (const std::string __msg)
- const result_type & result classrostlab_1_1blast_1_1parser__driver.html a97758814e87b1a81b2b2f5560782995b () const
- friend class rostlab::blast::parser classrostlab_1_1blast_1_1parser__driver.html af663df14ac06bd07784e5a25fb77bff5
rostlab::blast::parser_error
classrostlab_1_1blast_1_1parser__error.html
- parser_error
  classrostlab_1_1blast_1_1parser__error.html
  a90f098161f0a51cb592f6def82616d5b
  (const std::string &__msg)
rostlab::blast::position
classrostlab_1_1blast_1_1position.html
- const std::string filename_type classrostlab_1_1blast_1_1position.html a0197d7c5bc731f896d559c7854769530
- int counter_type classrostlab_1_1blast_1_1position.html add1b58b9540e788e6e028e430876fd89
- position
  classrostlab_1_1blast_1_1position.html
  aec623b694f4d06073f7faf97ef311d36
  (filename_type *f=YY_NULLPTR, counter_type l=1, counter_type c=1)
- void initialize classrostlab_1_1blast_1_1position.html a94cf5f30307db040cad9945fae923a31 (filename_type *fn=YY_NULLPTR, counter_type l=1, counter_type c=1)
- void lines classrostlab_1_1blast_1_1position.html a5362413af5bbf7d802fe949f551defca (counter_type count=1)
- void columns classrostlab_1_1blast_1_1position.html af2388b8894528581849008f829e2108b (counter_type count=1)
- filename_type * filename classrostlab_1_1blast_1_1position.html acc73d7826ddd1de97b12c03cf9c79801
- counter_type line classrostlab_1_1blast_1_1position.html a18e6bfcb45e34edf56fcbf2054c26814
- counter_type column classrostlab_1_1blast_1_1position.html a8416194f154b0e372c574d2e39ffaa75
- void lines classrostlab_1_1blast_1_1position.html a5362413af5bbf7d802fe949f551defca (counter_type count=1)
- void columns classrostlab_1_1blast_1_1position.html af2388b8894528581849008f829e2108b (counter_type count=1)
rostlab::blast::result
structrostlab_1_1blast_1_1result.html
- result
  structrostlab_1_1blast_1_1result.html
  ab9c59fe3193479880e965e44d0f379da
  ()
- virtual ~result structrostlab_1_1blast_1_1result.html a8c4194988077ad1ef2f1fde6a2ab8d18 ()
- operator bool
  structrostlab_1_1blast_1_1result.html
  a9dc7a630ec438e487f4223b4560a7086
  () const
- bool empty structrostlab_1_1blast_1_1result.html a436ceffc106e8706c4a8a47eb04dff17
- std::string blast_version structrostlab_1_1blast_1_1result.html a8d1d7dde8b87ea8230948bf355cb6b6c
- std::vector< std::string > references structrostlab_1_1blast_1_1result.html a8525a2fea583e9167f7bfd51589faf43
- std::vector< rostlab::blast::round > rounds structrostlab_1_1blast_1_1result.html abab428d7a9f9e6f78a20e29321ee459c
- std::string q_name structrostlab_1_1blast_1_1result.html a316fbedbe5f98cfbe844e78679dbebb7
- std::string q_desc structrostlab_1_1blast_1_1result.html aa9578da85b347db66328e7c4e15728f8
- size_t q_length structrostlab_1_1blast_1_1result.html af526ca95288ae2b023e9c71fd09ac7fe
- std::string db_name structrostlab_1_1blast_1_1result.html ad6c47a5c5964b571f395511523b07306
- size_t db_nseq structrostlab_1_1blast_1_1result.html a788ab03e62122890f53fea49d0429a0a
- size_t db_nletter structrostlab_1_1blast_1_1result.html a8a85eacaee52d5a5d916cc28be8e92bf
- std::vector< rostlab::blast::oneline > onelines structrostlab_1_1blast_1_1result.html a329c8c96f8a616d37a3ba48e4f1739b7
- bool converged structrostlab_1_1blast_1_1result.html a35a136ba09a81bdfddec789fad657164
- std::vector< rostlab::blast::hit > hits structrostlab_1_1blast_1_1result.html a660159704e5334ec0bd606e270abe27d
- std::string tail structrostlab_1_1blast_1_1result.html a58bd767de4077f1ca154d103fa523900
rostlab::blast::round
structrostlab_1_1blast_1_1round.html
- round
  structrostlab_1_1blast_1_1round.html
  a0d2c4122d5e867afa678f48fe368f009
  (size_t __oneline_idx=0, size_t __oneline_cnt=0, size_t __hit_idx=0, size_t __hit_cnt=0, size_t __oneline_new_idx=noidx, size_t __oneline_new_cnt=0)
- virtual ~round structrostlab_1_1blast_1_1round.html a8bebf94173ff4c6ccb1a4f151d651daa ()
- size_t oneline_idx structrostlab_1_1blast_1_1round.html a20014457c83e1b98684a393828b9f283
- size_t oneline_cnt structrostlab_1_1blast_1_1round.html a69a65504fc939e41824291ef829be3a7
- size_t hit_idx structrostlab_1_1blast_1_1round.html afb2be3e1a562764f98812553b11dee8e
- size_t hit_cnt structrostlab_1_1blast_1_1round.html abe78de9ade912edb4a449ce5b366e933
- size_t oneline_new_idx structrostlab_1_1blast_1_1round.html aa061fbea3c2a1f288e7afaf297b53ce9
- size_t oneline_new_cnt structrostlab_1_1blast_1_1round.html aab2215bcb9285d328a2acb9e9682a107
- static const size_t noidx structrostlab_1_1blast_1_1round.html ad23b74c5b8d122c47a0d54be37aa0cda
rostlab::blast::parser::stack::slice
classrostlab_1_1blast_1_1parser_1_1stack_1_1slice.html
- slice
  classrostlab_1_1blast_1_1parser_1_1stack_1_1slice.html
  a9009518ca03c38c22ac9d72f6e5cb667
  (const stack &stack, index_type range) YY_NOEXCEPT
- const T & operator[] classrostlab_1_1blast_1_1parser_1_1stack_1_1slice.html a5767af5b2f2eeeb729f4fd940f8dcd0e (index_type i) const
rostlab::blast::parser::symbol_kind
structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
- symbol_kind_type
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187
- YYNTOKENS
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187adaa43eac8db52802057fb126b4a142de
- S_YYEMPTY
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a95cc7038576a1186bfe4ce849dae0b10
- S_YYEOF
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a72def4bcd43329c21599591a6dc1def2
- S_YYerror
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ad60625a24b22a7b98b9a4dfdd5da1bbc
- S_YYUNDEF
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ac669286867d23bf510673d81f460ca39
- S_BLAST_VERSION
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a4ce27f72e48eb597829736d75fe89921
- S_REFERENCE
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a0ffd34c6c2366d6ecd379c7967ecaaae
- S_STRING
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a2ba2dd5879c6025470cc573ab9505ec0
- S_INT
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a46d498af2eaf85b8697733685ad8510f
- S_DBL
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a1f3b8373d818aff47a22c1d500929dec
- S_SEARCHING
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7aa7a6d365ecaaccff35425eebbca8c4
- S_NOHITS
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ab80c31a144cc10faa1863a7f57938001
- S_ONELINE_DESC_HEADER
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ad75e4290f0a8442442687104989f23fd
- S_SEQ_FOUND_AGAIN
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a0e0a3ca3bc06c567d0c29ec86b70c0aa
- S_SEQ_FOUND_NEW
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a556966b06b3bdfa7966a2ac95ebfbf6a
- S_CONVERGED
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7ff73c0477d7bca0075ee88d0496479b
- S_TAIL
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187af1b5aa092c1a7b1aa56180379c3829e7
- S_QUERYEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187add5278ba69e69e88a8eb1a790fb710ef
- S_DATABASECOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a953e80c7784a68baa5d61bc0544c45fc
- S_RESFROMROUND
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ab5b2286268ace6150b20d0c88c6d2eb1
- S_SCOREEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a1b46e1fbbff06540ff66ecd447ba2dcd
- S_EXPECTEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a891ed89583b447d2df920b73263d1735
- S_METHODCOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187afb954d1449dac52cd38b7021c05cff40
- S_IDENTITIESEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187adcf3f100d39b3c92d26cf78ba4b393f0
- S_POSITIVESEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a9c823728c98a9c663bee81e06d17d216
- S_GAPSEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a3743ed1d7332d140bb925b77d0d5ada5
- S_STRANDEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a40041d7fd56b9443f56dabc4101e9c62
- S_FRAMEEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187af084feacff51f0ce2be184005ceb50d9
- S_QUERYCOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ad0358a21a2a9168a1fe85eb431ff7631
- S_SBJCTCOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a23b0bf27ba84cc9afa0df6d2cec0c8ab
- S_28_
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a79b2b141585bb5bf3ef0471110da52fb
- S_29_
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a91b9ef6befc3d8700c8f0004e28ecd20
- S_30_0_
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a074cff0ac16bff19eb1cfd9bc37f21d1
- S_YYACCEPT
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ab93a48fced164bb865b3d31ecf35fe9d
- S_input
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a10fe12f3bd12d167f1fe5dcf231fcd87
- S_references
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a847432ef58bdae5f3cc143b0c2c06a01
- S_query
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a0e5a7f1023db681bbf978c473996e6cb
- S_database
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a06a8293e9393c22ebd0a07f4e4970886
- S_rounds
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a1e700d291e4bc34ca9f621bd31dca3ef
- S_round
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a70965020b12764c3ab6f62882ae4ca6b
- S_38_1
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ace8e4565af482e21732b1a246f76407b
- S_outcome
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7f7887c31a893588af2dbec8d18a29dd
- S_resfromround
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a34ddeb6a9472a9ebe0e9dac8364018e9
- S_converged
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7d4e01019123a3c7ddbca3ff964f8699
- S_hits
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a2a365254a5af481c48beb318a4f9eef3
- S_oneline_descs
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a8d26392c45731bd3d37eb9b10a45c5f7
- S_oneline_desc
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ac1c8d40368782e4b62886d06962e66a0
- S_num
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187aae1029abd0ae90d7f35f8a3cab2ecf8a
- S_hit
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187aa348a8a2118e23d9344cc9fd011dd4df
- S_hit_header
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187aa68a2c3603cd44adc34c814750b359cb
- S_hsps
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187af7c1ddd1377b532f9f4e2982156b5a7a
- S_hsp
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a85b1d76792c2216377f7a4193f00be1d
- S_hsp_headerfields
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a8b0e3be66ed92b00b5af267d3d8c2c03
- S_hsp_headerfield
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a785a601feea88d5a8a0626be39baa12d
- S_alitriples
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a786cc524de614c1ab9c7f4d81019f3db
- S_alitriple
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187abbac0b55cabc79830435fe1338706cce
- S_tail
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a06838eaec3f2613a513af4c84901da3d
- YYNTOKENS
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187adaa43eac8db52802057fb126b4a142de
- S_YYEMPTY
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a95cc7038576a1186bfe4ce849dae0b10
- S_YYEOF
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a72def4bcd43329c21599591a6dc1def2
- S_YYerror
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ad60625a24b22a7b98b9a4dfdd5da1bbc
- S_YYUNDEF
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ac669286867d23bf510673d81f460ca39
- S_BLAST_VERSION
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a4ce27f72e48eb597829736d75fe89921
- S_REFERENCE
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a0ffd34c6c2366d6ecd379c7967ecaaae
- S_STRING
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a2ba2dd5879c6025470cc573ab9505ec0
- S_INT
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a46d498af2eaf85b8697733685ad8510f
- S_DBL
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a1f3b8373d818aff47a22c1d500929dec
- S_SEARCHING
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7aa7a6d365ecaaccff35425eebbca8c4
- S_NOHITS
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ab80c31a144cc10faa1863a7f57938001
- S_ONELINE_DESC_HEADER
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ad75e4290f0a8442442687104989f23fd
- S_SEQ_FOUND_AGAIN
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a0e0a3ca3bc06c567d0c29ec86b70c0aa
- S_SEQ_FOUND_NEW
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a556966b06b3bdfa7966a2ac95ebfbf6a
- S_CONVERGED
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7ff73c0477d7bca0075ee88d0496479b
- S_TAIL
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187af1b5aa092c1a7b1aa56180379c3829e7
- S_QUERYEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187add5278ba69e69e88a8eb1a790fb710ef
- S_DATABASECOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a953e80c7784a68baa5d61bc0544c45fc
- S_RESFROMROUND
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ab5b2286268ace6150b20d0c88c6d2eb1
- S_SCOREEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a1b46e1fbbff06540ff66ecd447ba2dcd
- S_EXPECTEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a891ed89583b447d2df920b73263d1735
- S_METHODCOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187afb954d1449dac52cd38b7021c05cff40
- S_IDENTITIESEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187adcf3f100d39b3c92d26cf78ba4b393f0
- S_POSITIVESEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a9c823728c98a9c663bee81e06d17d216
- S_GAPSEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a3743ed1d7332d140bb925b77d0d5ada5
- S_STRANDEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a40041d7fd56b9443f56dabc4101e9c62
- S_FRAMEEQ
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187af084feacff51f0ce2be184005ceb50d9
- S_QUERYCOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ad0358a21a2a9168a1fe85eb431ff7631
- S_SBJCTCOLON
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a23b0bf27ba84cc9afa0df6d2cec0c8ab
- S_28_
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a79b2b141585bb5bf3ef0471110da52fb
- S_29_
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a91b9ef6befc3d8700c8f0004e28ecd20
- S_30_0_
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a074cff0ac16bff19eb1cfd9bc37f21d1
- S_YYACCEPT
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ab93a48fced164bb865b3d31ecf35fe9d
- S_input
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a10fe12f3bd12d167f1fe5dcf231fcd87
- S_references
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a847432ef58bdae5f3cc143b0c2c06a01
- S_query
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a0e5a7f1023db681bbf978c473996e6cb
- S_database
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a06a8293e9393c22ebd0a07f4e4970886
- S_rounds
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a1e700d291e4bc34ca9f621bd31dca3ef
- S_round
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a70965020b12764c3ab6f62882ae4ca6b
- S_38_1
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ace8e4565af482e21732b1a246f76407b
- S_outcome
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7f7887c31a893588af2dbec8d18a29dd
- S_resfromround
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a34ddeb6a9472a9ebe0e9dac8364018e9
- S_converged
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a7d4e01019123a3c7ddbca3ff964f8699
- S_hits
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a2a365254a5af481c48beb318a4f9eef3
- S_oneline_descs
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a8d26392c45731bd3d37eb9b10a45c5f7
- S_oneline_desc
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187ac1c8d40368782e4b62886d06962e66a0
- S_num
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187aae1029abd0ae90d7f35f8a3cab2ecf8a
- S_hit
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187aa348a8a2118e23d9344cc9fd011dd4df
- S_hit_header
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187aa68a2c3603cd44adc34c814750b359cb
- S_hsps
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187af7c1ddd1377b532f9f4e2982156b5a7a
- S_hsp
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a85b1d76792c2216377f7a4193f00be1d
- S_hsp_headerfields
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a8b0e3be66ed92b00b5af267d3d8c2c03
- S_hsp_headerfield
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a785a601feea88d5a8a0626be39baa12d
- S_alitriples
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a786cc524de614c1ab9c7f4d81019f3db
- S_alitriple
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187abbac0b55cabc79830435fe1338706cce
- S_tail
  structrostlab_1_1blast_1_1parser_1_1symbol__kind.html
  ace135585ff43cdf755efb80cc7a3c187a06838eaec3f2613a513af4c84901da3d
rostlab::blast::parser::symbol_type
structrostlab_1_1blast_1_1parser_1_1symbol__type.html
rostlab::blast::parser::basic_symbol< by_kind >
rostlab::blast::parser::syntax_error
structrostlab_1_1blast_1_1parser_1_1syntax__error.html
- syntax_error
  structrostlab_1_1blast_1_1parser_1_1syntax__error.html
  aec4cc23cad5fce89e7272e2a06c73a57
  (const location_type &l, const std::string &m)
- syntax_error
  structrostlab_1_1blast_1_1parser_1_1syntax__error.html
  a0ce3d393fb28c93af9aa0f962b7f54a5
  (const syntax_error &s)
- ~syntax_error
  structrostlab_1_1blast_1_1parser_1_1syntax__error.html
  a999d21a67cdfada05c08094fd9da524c
  () YY_NOEXCEPT YY_NOTHROW
- location_type location structrostlab_1_1blast_1_1parser_1_1syntax__error.html a4583a948ddf10adca85963352749cb16
rostlab::blast::parser::token
structrostlab_1_1blast_1_1parser_1_1token.html
- token_kind_type
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0
- YYEMPTY
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0ae7eec44d168d253d1798e597b465f153
- END
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a57b9f73f00581696a565f0e172f3af59
- YYerror
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a46030844b1a1ce7f4fb529511f531130
- YYUNDEF
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af976283de72247a892fcf2242b9caf7c
- BLAST_VERSION
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a3614172cec6682d2e54d4641b26b0538
- REFERENCE
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a17063deef926db6d9118a1cdc8f1c08e
- STRING
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a42d5e18168d1a44fd7e9155515706ce9
- INT
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a03c883c26d1acdd3a0af171fd8e1a9b3
- DBL
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af1c92e154ec463331b540ba5ed0fdec9
- SEARCHING
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a16c75b0dd6631063a7594cc9199e64ab
- NOHITS
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0aabe83428c0f7b647640064d65cf8cfa5
- ONELINE_DESC_HEADER
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af179d28be7ec3b0ab38b47eaeee1be68
- SEQ_FOUND_AGAIN
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a6153801fa819b03c2a23d4c8fee9ee7e
- SEQ_FOUND_NEW
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a4459293f434acc1fa23d2a6690ca171c
- CONVERGED
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a29bdf69719b057bc52d22bb961aff6a1
- TAIL
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a5df85cf7aaa2a24f7bd11d4b89eeaf00
- QUERYEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0ab36be1058fa8bc1e39fccc0a11da67fa
- DATABASECOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a88d3ad0cefab767c5dc26649b1911c40
- RESFROMROUND
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a669590e77955bed2b62f931bee9a4fe9
- SCOREEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0aec4217b3bdb2db6cae9c4ec4f424dc9a
- EXPECTEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a49f352b072c54fdb7409d0b5b04ac9ec
- METHODCOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a1e720fc8d0d47ba943ea5ab061c7713b
- IDENTITIESEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a5d52cc56bbbb54cb5d80a142cde29e0a
- POSITIVESEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0ac9ca6c41e83c1f7b6b39fa3b696fab67
- GAPSEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af05d2e4841a339fb20d409cc746c10be
- STRANDEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a7e37232e858091f9f60d4bab70da9a15
- FRAMEEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a67b4df4e6dca2f94eb710e2f665bc990
- QUERYCOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a538b47bcac8f4c17a72d604f71857ec9
- SBJCTCOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0affaf44c67076b0e2b0265fa81fe3be88
- token_kind_type yytokentype structrostlab_1_1blast_1_1parser_1_1token.html a0554aed785cd7bb1443121b47c05dff0
- YYEMPTY
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0ae7eec44d168d253d1798e597b465f153
- END
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a57b9f73f00581696a565f0e172f3af59
- YYerror
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a46030844b1a1ce7f4fb529511f531130
- YYUNDEF
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af976283de72247a892fcf2242b9caf7c
- BLAST_VERSION
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a3614172cec6682d2e54d4641b26b0538
- REFERENCE
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a17063deef926db6d9118a1cdc8f1c08e
- STRING
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a42d5e18168d1a44fd7e9155515706ce9
- INT
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a03c883c26d1acdd3a0af171fd8e1a9b3
- DBL
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af1c92e154ec463331b540ba5ed0fdec9
- SEARCHING
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a16c75b0dd6631063a7594cc9199e64ab
- NOHITS
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0aabe83428c0f7b647640064d65cf8cfa5
- ONELINE_DESC_HEADER
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af179d28be7ec3b0ab38b47eaeee1be68
- SEQ_FOUND_AGAIN
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a6153801fa819b03c2a23d4c8fee9ee7e
- SEQ_FOUND_NEW
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a4459293f434acc1fa23d2a6690ca171c
- CONVERGED
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a29bdf69719b057bc52d22bb961aff6a1
- TAIL
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a5df85cf7aaa2a24f7bd11d4b89eeaf00
- QUERYEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0ab36be1058fa8bc1e39fccc0a11da67fa
- DATABASECOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a88d3ad0cefab767c5dc26649b1911c40
- RESFROMROUND
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a669590e77955bed2b62f931bee9a4fe9
- SCOREEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0aec4217b3bdb2db6cae9c4ec4f424dc9a
- EXPECTEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a49f352b072c54fdb7409d0b5b04ac9ec
- METHODCOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a1e720fc8d0d47ba943ea5ab061c7713b
- IDENTITIESEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a5d52cc56bbbb54cb5d80a142cde29e0a
- POSITIVESEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0ac9ca6c41e83c1f7b6b39fa3b696fab67
- GAPSEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0af05d2e4841a339fb20d409cc746c10be
- STRANDEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a7e37232e858091f9f60d4bab70da9a15
- FRAMEEQ
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a67b4df4e6dca2f94eb710e2f665bc990
- QUERYCOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0a538b47bcac8f4c17a72d604f71857ec9
- SBJCTCOLON
  structrostlab_1_1blast_1_1parser_1_1token.html
  a8fce3387c71209ecd53514c205c847b0affaf44c67076b0e2b0265fa81fe3be88
rostlab::blast::parser::value_type
unionrostlab_1_1blast_1_1parser_1_1value__type.html
- long int ival unionrostlab_1_1blast_1_1parser_1_1value__type.html ad2aa4962a553e25290e89c04acc3d34d
- double dval unionrostlab_1_1blast_1_1parser_1_1value__type.html aa444d30f59f2c84995b622ccc510a50d
- std::string * sval unionrostlab_1_1blast_1_1parser_1_1value__type.html a427490182e98d64f14d50911e7513230
rostlab
namespacerostlab.html
rostlab::blast
- std::ostream & operator<< namespacerostlab.html a9d19e5f126ecb02a0c0c621719e8f965 (std::ostream &__os, const rostlab::blast::round &__r)
- std::ostream & operator<< namespacerostlab.html ac42cd9674e0f5680a30e864a86b494fd (std::ostream &__os, const rostlab::blast::oneline &__r)
- std::ostream & operator<< namespacerostlab.html a16c3f5ffbf446e34d1debef152f85696 (std::ostream &__os, const rostlab::blast::hsp &__r)
- std::ostream & operator<< namespacerostlab.html a45ffe304a87183ed825b2cb8e2c1d020 (std::ostream &__os, const rostlab::blast::hit &__r)
- std::ostream & operator<< namespacerostlab.html aa47aac07c380fe4b902c73f6e5b7b736 (std::ostream &__os, const rostlab::blast::result &__r)
rostlab::blast
namespacerostlab_1_1blast.html
rostlab::blast::parser_error
rostlab::blast::parser_driver
rostlab::blast::position
rostlab::blast::location
rostlab::blast::parser
rostlab::blast::round
rostlab::blast::hsp
rostlab::blast::hit
rostlab::blast::oneline
rostlab::blast::result
- position & operator+= namespacerostlab_1_1blast.html a54312a7bd44aa19b6f053940e2a19e37 (position &res, position::counter_type width)
- position operator+ namespacerostlab_1_1blast.html a890f7e59bcf1b462448c75ad811c2141 (position res, position::counter_type width)
- position & operator-= namespacerostlab_1_1blast.html aaeba2d6663e15969c6212d57dd8b2626 (position &res, position::counter_type width)
- position operator- namespacerostlab_1_1blast.html a9e6b3ab3b08e457524532510e847c6bd (position res, position::counter_type width)
- std::basic_ostream< YYChar > & operator<< namespacerostlab_1_1blast.html aea64fce55d8916f092d275b55cdc864c (std::basic_ostream< YYChar > &ostr, const position &pos)
- location & operator+= namespacerostlab_1_1blast.html a73eca9e9f6d5beacd1cf826877f3d9f8 (location &res, const location &end)
- location operator+ namespacerostlab_1_1blast.html a4750d16a87b217f12af2ec62d5f7e01f (location res, const location &end)
- location & operator+= namespacerostlab_1_1blast.html a17757c1055c6f5d0a7b88618b22f4ff4 (location &res, location::counter_type width)
- location operator+ namespacerostlab_1_1blast.html a7cfeb8dc163137f73de97d03d7e18dd0 (location res, location::counter_type width)
- location & operator-= namespacerostlab_1_1blast.html a8bb4ef71db9b269dd7474c4ab2a6ad0a (location &res, location::counter_type width)
- location operator- namespacerostlab_1_1blast.html a2bb44a418158386cdf4611c0adbf5dab (location res, location::counter_type width)
- std::basic_ostream< YYChar > & operator<< namespacerostlab_1_1blast.html a08c7c3c403f5932149d3ecce66ba118e (std::basic_ostream< YYChar > &ostr, const location &loc)
rostlab
rostlab/
dir_b7a5fe10b55060f48179abd50ad1f335.html
blast-parser-driver.h
blast-parser-location.h
blast-parser-parser.h
blast-parser-position.h
blast-parser-stack.h
blast-result.h