BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= ORF02707
         (51 letters)

Database: big_80 
           6,172,567 sequences; 2,144,756,490 total letters

Searching..................................................done



 ***** No hits found ******

Searching..................................................done



 ***** No hits found ******

  Database: big_80
    Posted date:  Jun 21, 2011 12:12 AM
  Number of letters in database: 999,999,540
  Number of sequences in database:  1,233,551
  
  Database: /mnt/project/rost_db/work/big/20110619-1/big_80.01
    Posted date:  Jun 21, 2011 12:15 AM
  Number of letters in database: 999,999,953
  Number of sequences in database:  3,404,212
  
  Database: /mnt/project/rost_db/work/big/20110619-1/big_80.02
    Posted date:  Jun 21, 2011 12:16 AM
  Number of letters in database: 144,756,997
  Number of sequences in database:  1,534,804
  
Lambda     K      H
   0.322    0.134    0.479 

Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,009,561
Number of Sequences: 6172567
Number of extensions: 15216483
Number of successful extensions: 47546
Number of sequences better than  1.0: 1
Number of HSP's better than  1.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47546
Number of HSP's gapped (non-prelim): 2
length of query: 51
length of database: 2,144,756,490
effective HSP length: 24
effective length of query: 27
effective length of database: 1,996,614,882
effective search space: 53908601814
effective search space used: 53908601814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= sp|P47944|MT4_HUMAN Metallothionein-4 OS=Homo sapiens GN=MT4
PE=2 SV=1
         (62 letters)

Database: big_80 
           7,170,017 sequences; 2,505,616,640 total letters

Searching..................................................done



>tr|F7G3K3|F7G3K3_ORNAN Metallothionein OS=Ornithorhynchus
          anatinus GN=MT4 PE=3 SV=1
          Length = 63

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/63 (85%), Positives = 58/63 (92%), Gaps = 1/63 (1%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSD-KCS 59
          MDP EC CMSGGIC+CGDNCKCT CNCKTCRKSCCPCCPPGCAKCA+GC+CK G+D KCS
Sbjct: 1  MDPEECTCMSGGICICGDNCKCTNCNCKTCRKSCCPCCPPGCAKCAQGCVCKRGADNKCS 60

Query: 60 CCP 62
          CCP
Sbjct: 61 CCP 63


>tr|F7IDP1|F7IDP1_CALJA Metallothionein OS=Callithrix jacchus PE=3
          SV=1
          Length = 61

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC 60
          MDP  C C +GG C C  +CKC  C C + RKSCC CCP GCA CA+GCICK  SDK SC
Sbjct: 1  MDPN-CSCAAGGSCTCTSSCKCKECTCTSYRKSCCSCCPMGCANCAQGCICKEASDKYSC 59

Query: 61 CP 62
          C 
Sbjct: 60 CA 61


>tr|G5CAW2|G5CAW2_HETGA Metallothionein-3 OS=Heterocephalus glaber
          GN=GW7_14200 PE=4 SV=1
          Length = 68

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCIC------KGG 54
          MDP  C C +GG C C D+CKC  C C  C++SCC CCP  C KCA+ C+C      K  
Sbjct: 1  MDPETCPCPAGGSCTCADSCKCKGCRCTDCKQSCCSCCPADCEKCAKDCVCTGVKGGKAE 60

Query: 55 SDKCSCC 61
           +KCSCC
Sbjct: 61 EEKCSCC 67


>sp|P15786|MT1_COLLI Metallothionein-1 OS=Columba livia PE=1 SV=1
          Length = 63

 Score = 53.5 bits (127), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKG-GSDKCS 59
          MD ++C C +GG C CGDNCKC  C C +C+K CC CCP GCAKCA+GC+CKG  S KCS
Sbjct: 1  MDSQDCPCAAGGTCTCGDNCKCKNCKCTSCKKGCCSCCPAGCAKCAQGCVCKGPPSAKCS 60

Query: 60 CC 61
          CC
Sbjct: 61 CC 62


>sp|Q6J1T3|MT_SCYTO Metallothionein OS=Scyliorhinus torazame GN=mt
          PE=3 SV=1
          Length = 68

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 7/66 (10%)

Query: 2  DPRECVCMSGGICMCGDNCKCTTCNCKT-----CRKSCCPCCPPGCAKCARGCICKG-GS 55
          D + CVC+ G  C C + C+C+ C C T     C+KSCC CCP GC  CA GC+CKG  S
Sbjct: 3  DTKPCVCLDGS-CSCENTCRCSDCRCPTSKAGRCQKSCCSCCPAGCTNCANGCVCKGKAS 61

Query: 56 DKCSCC 61
          DKCSCC
Sbjct: 62 DKCSCC 67


>tr|F6PZW8|F6PZW8_MACMU Metallothionein OS=Macaca mulatta
          GN=LOC702286 PE=3 SV=1
          Length = 61

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC 60
          MDP  C C +G  C C  +C C  C C +C+KSCC     GCAKCA+G +CKG S+ CSC
Sbjct: 1  MDP-NCSCAAGDSCSCAGSCTCKECKCTSCKKSCCSRYRVGCAKCAQGYVCKGASETCSC 59

Query: 61 C 61
          C
Sbjct: 60 C 60


>tr|G1QP37|G1QP37_NOMLE Metallothionein OS=Nomascus leucogenys
          PE=3 SV=1
          Length = 63

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCC--PPGCAKCARGCICKGGSDKC 58
          MDP  C C +GG C C  + KC  C C + +K+ C C   P GCAKCA+GC+CKG S+KC
Sbjct: 1  MDP-NCSCATGGSCSCASSLKCKECKCTSRKKNVCCCSCCPMGCAKCAQGCVCKGTSEKC 59

Query: 59 SCCP 62
          SCC 
Sbjct: 60 SCCA 63


>tr|G1SSN8|G1SSN8_RABIT Uncharacterized protein OS=Oryctolagus
          cuniculus GN=MT2A PE=4 SV=1
          Length = 53

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 4/50 (8%)

Query: 14 CMCGDNCKC-TTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSCCP 62
          C+  D+C C ++C C +CRKSCCP    GC +CA+GCICKG S+KCSCC 
Sbjct: 7  CITSDSCTCASSCTCMSCRKSCCP---VGCVQCAQGCICKGASNKCSCCA 53


>tr|B5XDS4|B5XDS4_SALSA Metallothionein OS=Salmo salar GN=MT PE=3
          SV=1
          Length = 59

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGG 54
          MDP  C C   G C CG  CKCT C C T  KSCC CCP GC+KCA GC+CK G
Sbjct: 1  MDP--CDCSKTGRCSCGGLCKCTNCGCAT--KSCCSCCPTGCSKCASGCVCKEG 50


>tr|G1QP67|G1QP67_NOMLE Metallothionein OS=Nomascus leucogenys
          GN=MT1CP PE=3 SV=1
          Length = 61

 Score = 45.4 bits (106), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 1  MDPRECVCMSGGICMCGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC 60
          MD   C C +GG C C  +CKC    C +C+K+CC CCP GCAKCA+GCICKG  +KCSC
Sbjct: 1  MD-LSCSCATGGSCTCASSCKCKEYKCTSCKKNCCSCCPVGCAKCAQGCICKGALEKCSC 59

Query: 61 C 61
          C
Sbjct: 60 C 60


  Database: big_80
    Posted date:  Feb 6, 2012  9:39 AM
  Number of letters in database: 999,999,843
  Number of sequences in database:  1,100,691
  
  Database: /var/tmp/rost_db/data/big/big_80.01
    Posted date:  Feb 6, 2012  9:42 AM
  Number of letters in database: 999,999,792
  Number of sequences in database:  2,641,400
  
  Database: /var/tmp/rost_db/data/big/big_80.02
    Posted date:  Feb 6, 2012  9:44 AM
  Number of letters in database: 505,617,005
  Number of sequences in database:  3,427,926
  
Lambda     K      H
   0.331    0.144    0.623 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,236,310
Number of Sequences: 7170017
Number of extensions: 10911235
Number of successful extensions: 95546
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 1456
Number of HSP's that attempted gapping in prelim test: 82115
Number of HSP's gapped (non-prelim): 10847
length of query: 62
length of database: 2,505,616,640
effective HSP length: 34
effective length of query: 28
effective length of database: 2,261,836,062
effective search space: 63331409736
effective search space used: 63331409736
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 64 (29.3 bits)
