BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= query
         (113 letters)

Database: big_80 
           7,170,017 sequences; 2,505,616,640 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|pdb|2vh3_B                                                        212   8e-54

>pdb|pdb|2vh3_B
          Length = 117

 Score =  212 bits (539), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/113 (96%), Positives = 109/113 (96%)

Query: 1   AXAXSFPPXEIPGSKECLAEALQKHQGFKKKSYALIXAYLNYKEDAENYERAAEDFDSAV 60
           A A SFPP EIPGSKECLAEALQKHQGFKKKSYALI AYLNYKEDAENYERAAEDFDSAV
Sbjct: 1   AXACSFPPXEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYERAAEDFDSAV 60

Query: 61  KXTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLXTLFQKLYAIPHN 113
           K TG KEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSL TLFQKLYAIPHN
Sbjct: 61  KCTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKLYAIPHN 113


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

pdb|pdb|2vh3_B                                                        226   5e-58

Sequences not found previously or not previously below threshold:


CONVERGED!
>pdb|pdb|2vh3_B
          Length = 117

 Score =  226 bits (575), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 109/113 (96%), Positives = 109/113 (96%)

Query: 1   AXAXSFPPXEIPGSKECLAEALQKHQGFKKKSYALIXAYLNYKEDAENYERAAEDFDSAV 60
           A A SFPP EIPGSKECLAEALQKHQGFKKKSYALI AYLNYKEDAENYERAAEDFDSAV
Sbjct: 1   AXACSFPPXEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYERAAEDFDSAV 60

Query: 61  KXTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLXTLFQKLYAIPHN 113
           K TG KEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSL TLFQKLYAIPHN
Sbjct: 61  KCTGXKEGVDLHEGNPELIEEGFEKFLASLKIDRKALGSLCTLFQKLYAIPHN 113


  Database: big_80
    Posted date:  Feb 6, 2012  9:39 AM
  Number of letters in database: 999,999,843
  Number of sequences in database:  1,100,691
  
  Database: /mnt/project/rost_db/data/big/big_80.01
    Posted date:  Feb 6, 2012  9:42 AM
  Number of letters in database: 999,999,792
  Number of sequences in database:  2,641,400
  
  Database: /mnt/project/rost_db/data/big/big_80.02
    Posted date:  Feb 6, 2012  9:44 AM
  Number of letters in database: 505,617,005
  Number of sequences in database:  3,427,926
  
Lambda     K      H
   0.313    0.133    0.375 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 932,412,166
Number of Sequences: 7170017
Number of extensions: 30007572
Number of successful extensions: 53414
Number of sequences better than  1.0: 1
Number of HSP's better than  1.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53412
Number of HSP's gapped (non-prelim): 2
length of query: 113
length of database: 2,505,616,640
effective HSP length: 81
effective length of query: 32
effective length of database: 1,924,845,263
effective search space: 61595048416
effective search space used: 61595048416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 82 (36.2 bits)
