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Here is a list of all functions with links to the classes they belong to:

### - ~ -

- ~Aa() : pappso::Aa
- ~AaBase() : pappso::AaBase
- ~AaCode() : pappso::AaCode
- ~AaModification() : pappso::AaModification
- ~AaStringCodec() : pappso::AaStringCodec
- ~AaStringCodeMassMatching() : pappso::AaStringCodeMassMatching
- ~BafAsciiFileReader() : pappso::BafAsciiFileReader
- ~BafAsciiMsRunReader() : pappso::BafAsciiMsRunReader
- ~BaseColorMapPlotWidget() : pappso::BaseColorMapPlotWidget
- ~BasePlotContext() : pappso::BasePlotContext
- ~BasePlotWidget() : pappso::BasePlotWidget
- ~BaseTracePlotWidget() : pappso::BaseTracePlotWidget
- ~CosineSimilarity() : pappso::CosineSimilarity
- ~DaltonPrecision() : pappso::DaltonPrecision
- ~DriftSpecMassSpecColorMapPlotWidget() : pappso::DriftSpecMassSpecColorMapPlotWidget
- ~DriftSpecTracePlotWidget() : pappso::DriftSpecTracePlotWidget
- ~Enzyme() : pappso::Enzyme
- ~ExperimentalSpectrum() : pappso::specglob::ExperimentalSpectrum
- ~FastaFileIndexer() : pappso::FastaFileIndexer
- ~FastaOutputStream() : pappso::FastaOutputStream
- ~FastaReader() : pappso::FastaReader
- ~FilterCeilingAmplitudePercentage() : pappso::FilterCeilingAmplitudePercentage
- ~FilterChargeDeconvolution() : pappso::FilterChargeDeconvolution
- ~FilterComplementIonEnhancer() : pappso::FilterComplementIonEnhancer
- ~FilterFloorAmplitudePercentage() : pappso::FilterFloorAmplitudePercentage
- ~FilterFloorY() : pappso::FilterFloorY
- ~FilterGreatestY() : pappso::FilterGreatestY
- ~FilterGreatestYperWindow() : pappso::FilterGreatestYperWindow
- ~FilterHighPass() : pappso::FilterHighPass
- ~FilterHighPassPercentage() : pappso::FilterHighPassPercentage
- ~FilterInterface() : pappso::FilterInterface
- ~FilterLocalMaximum() : pappso::FilterLocalMaximum
- ~FilterLowIntensitySignalRemoval() : pappso::FilterLowIntensitySignalRemoval
- ~FilterLowPass() : pappso::FilterLowPass
- ~FilterMorphoAntiSpike() : pappso::FilterMorphoAntiSpike
- ~FilterMorphoBackground() : pappso::FilterMorphoBackground
- ~FilterMorphoMax() : pappso::FilterMorphoMax
- ~FilterMorphoMaxMin() : pappso::FilterMorphoMaxMin
- ~FilterMorphoMean() : pappso::FilterMorphoMean
- ~FilterMorphoMedian() : pappso::FilterMorphoMedian
- ~FilterMorphoMin() : pappso::FilterMorphoMin
- ~FilterMorphoMinMax() : pappso::FilterMorphoMinMax
- ~FilterMorphoSum() : pappso::FilterMorphoSum
- ~FilterMorphoWindowBase() : pappso::FilterMorphoWindowBase
- ~FilterMzExclusion() : pappso::FilterMzExclusion
- ~FilterNameInterface() : pappso::FilterNameInterface
- ~FilterNormalizeIntensities() : pappso::FilterNormalizeIntensities
- ~FilterOboPsiModSink() : pappso::FilterOboPsiModSink
- ~FilterOboPsiModTermAccession() : pappso::FilterOboPsiModTermAccession
- ~FilterOboPsiModTermDiffMono() : pappso::FilterOboPsiModTermDiffMono
- ~FilterOboPsiModTermLabel() : pappso::FilterOboPsiModTermLabel
- ~FilterOboPsiModTermName() : pappso::FilterOboPsiModTermName
- ~FilterPeakDelta() : pappso::FilterPeakDelta
- ~FilterQuantileBasedRemoveY() : pappso::FilterQuantileBasedRemoveY
- ~FilterRemoveC13() : pappso::FilterRemoveC13
- ~FilterRemoveY() : pappso::FilterRemoveY
- ~FilterResampleKeepGreater() : pappso::FilterResampleKeepGreater
- ~FilterResampleKeepPointInPolygon() : pappso::FilterResampleKeepPointInPolygon
- ~FilterResampleKeepSmaller() : pappso::FilterResampleKeepSmaller
- ~FilterResampleKeepXRange() : pappso::FilterResampleKeepXRange
- ~FilterResampleRemoveXRange() : pappso::FilterResampleRemoveXRange
- ~FilterRescaleY() : pappso::FilterRescaleY
- ~FilterRoundY() : pappso::FilterRoundY
- ~FilterSavitzkyGolay() : pappso::FilterSavitzkyGolay
- ~FilterScaleFactorY() : pappso::FilterScaleFactorY
- ~FilterSuiteString() : pappso::FilterSuiteString
- ~FilterTriangle() : pappso::FilterTriangle
- ~GraphicDeviceWidget() : GraphicDeviceWidget
- ~GrpExperiment() : pappso::GrpExperiment
- ~GrpGroup() : pappso::GrpGroup
- ~GrpGroupingMonitor() : pappso::GrpGroupingMonitor
- ~GrpGroupingMonitorInterface() : pappso::GrpGroupingMonitorInterface
- ~GrpMapPeptideToGroup() : pappso::GrpMapPeptideToGroup
- ~GrpMapPeptideToSubGroupSet() : pappso::GrpMapPeptideToSubGroupSet
- ~GrpPeptide() : pappso::GrpPeptide
- ~GrpPeptideSet() : pappso::GrpPeptideSet
- ~GrpProtein() : pappso::GrpProtein
- ~GrpSubGroup() : pappso::GrpSubGroup
- ~GrpSubGroupSet() : pappso::GrpSubGroupSet
- ~HttpButton() : pappso::HttpButton
- ~IntegrationScope() : pappso::IntegrationScope
- ~IntegrationScopeBase() : pappso::IntegrationScopeBase
- ~IntegrationScopeRect() : pappso::IntegrationScopeRect
- ~IntegrationScopeRhomb() : pappso::IntegrationScopeRhomb
- ~Ion() : pappso::Ion
- ~IonIsotopeRatioScore() : pappso::IonIsotopeRatioScore
- ~IonMobilityGrid() : pappso::IonMobilityGrid
- ~ItemCart() : pappso::spectree::ItemCart
- ~MapTrace() : pappso::MapTrace
- ~MassDataCombinerInterface() : pappso::MassDataCombinerInterface
- ~MassSpecTracePlotContext() : pappso::MassSpecTracePlotContext
- ~MassSpecTracePlotWidget() : pappso::MassSpecTracePlotWidget
- ~MassSpectrum() : pappso::MassSpectrum
- ~MassSpectrumCombiner() : pappso::MassSpectrumCombiner
- ~MassSpectrumFilterGreatestItensities() : pappso::MassSpectrumFilterGreatestItensities
- ~MassSpectrumFilterInterface() : pappso::MassSpectrumFilterInterface
- ~MassSpectrumFilterResampleKeepMzRange() : pappso::MassSpectrumFilterResampleKeepMzRange
- ~MassSpectrumFilterResampleRemoveMzRange() : pappso::MassSpectrumFilterResampleRemoveMzRange
- ~MassSpectrumId() : pappso::MassSpectrumId
- ~MassSpectrumMinusCombiner() : pappso::MassSpectrumMinusCombiner
- ~MassSpectrumPlusCombiner() : pappso::MassSpectrumPlusCombiner
- ~MassSpectrumWidget() : pappso::MassSpectrumWidget
- ~MgfOutput() : pappso::MgfOutput
- ~MorpheusScore() : pappso::MorpheusScore
- ~MsFileAccessor() : pappso::MsFileAccessor
- ~MsFileReader() : pappso::MsFileReader
- ~MsMsWindowGroupList() : pappso::TimsDiaSlices::MsMsWindowGroupList
- ~MsRunDataSetTree() : pappso::MsRunDataSetTree
- ~MsRunDataSetTreeNode() : pappso::MsRunDataSetTreeNode
- ~MsRunId() : pappso::MsRunId
- ~MsRunQualifiedSpectrumLoader() : pappso::MsRunQualifiedSpectrumLoader
- ~MsRunReadConfig() : pappso::MsRunReadConfig
- ~MsRunReader() : pappso::MsRunReader
- ~MsRunReaderRetentionTimeLine() : pappso::MsRunReaderRetentionTimeLine
- ~MsRunReaderScanNumberMultiMap() : pappso::MsRunReaderScanNumberMultiMap
- ~MsRunReaderTicChromatogram() : pappso::MsRunReaderTicChromatogram
- ~MsRunRetentionTime() : pappso::MsRunRetentionTime< T >
- ~MsRunSlice() : pappso::MsRunSlice
- ~MsRunXicExtractor() : pappso::MsRunXicExtractor
- ~MsRunXicExtractorDisk() : pappso::MsRunXicExtractorDisk
- ~MsRunXicExtractorDiskBuffer() : pappso::MsRunXicExtractorDiskBuffer
- ~MsRunXicExtractorFactory() : pappso::MsRunXicExtractorFactory
- ~MsRunXicExtractorInterface() : pappso::MsRunXicExtractorInterface
- ~MzCalibrationInterface() : pappso::MzCalibrationInterface
- ~MzCalibrationModel1() : pappso::MzCalibrationModel1
- ~MzCalibrationModel1Cached() : pappso::MzCalibrationModel1Cached
- ~MzCalibrationStore() : pappso::MzCalibrationStore
- ~MzIdentMlWriter() : pappso::MzIdentMlWriter
- ~MzIntegrationParams() : pappso::MzIntegrationParams
- ~MzRange() : pappso::MzRange
- ~MzxmlOutput() : pappso::MzxmlOutput
- ~OboChooserWidget() : pappso::OboChooserWidget
- ~OboListModel() : pappso::OboListModel
- ~OboListProxyModel() : pappso::OboListProxyModel
- ~OboListWidget() : pappso::OboListWidget
- ~OboPsiMod() : pappso::OboPsiMod
- ~OboPsiModHandler() : pappso::OboListModel::OboPsiModHandler
- ~OboPsiModTerm() : pappso::OboPsiModTerm
- ~OboTermForm() : pappso::OboTermForm
- ~PappsoException() : pappso::PappsoException
- ~PeakIonIsotopeMatch() : pappso::PeakIonIsotopeMatch
- ~PeakIonMatch() : pappso::PeakIonMatch
- ~Peptide() : pappso::Peptide
- ~PeptideBuilder() : pappso::PeptideBuilder
- ~PeptideFixedModificationBuilder() : pappso::PeptideFixedModificationBuilder
- ~PeptideFragment() : pappso::PeptideFragment
- ~PeptideFragmentIon() : pappso::PeptideFragmentIon
- ~PeptideFragmentIonListBase() : pappso::PeptideFragmentIonListBase
- ~PeptideIsotopeSpectrumMatch() : pappso::PeptideIsotopeSpectrumMatch
- ~PeptideMethioninRemove() : pappso::PeptideMethioninRemove
- ~PeptideModel() : pappso::specglob::PeptideModel
- ~PeptideModificatorBase() : pappso::PeptideModificatorBase
- ~PeptideModificatorInterface() : pappso::PeptideModificatorInterface
- ~PeptideModificatorPipeline() : pappso::PeptideModificatorPipeline
- ~PeptideModificatorTee() : pappso::PeptideModificatorTee
- ~PeptideNaturalIsotope() : pappso::PeptideNaturalIsotope
- ~PeptideNaturalIsotopeAverage() : pappso::PeptideNaturalIsotopeAverage
- ~PeptideNaturalIsotopeList() : pappso::PeptideNaturalIsotopeList
- ~PeptideRawFragmentMasses() : pappso::PeptideRawFragmentMasses
- ~PeptideSemiEnzyme() : pappso::PeptideSemiEnzyme
- ~PeptideSizeFilter() : pappso::PeptideSizeFilter
- ~PeptideSpectrum() : pappso::specglob::PeptideSpectrum
- ~PeptideSpectrumMatch() : pappso::PeptideSpectrumMatch
- ~PeptideVariableModificationBuilder() : pappso::PeptideVariableModificationBuilder
- ~PeptideVariableModificationReplacement() : pappso::PeptideVariableModificationReplacement
- ~PostTreatment() : pappso::specglob::PostTreatment
- ~PpmPrecision() : pappso::PpmPrecision
- ~PrecisionWidget() : pappso::PrecisionWidget
- ~Protein() : pappso::Protein
- ~ProteinIntegerCode() : pappso::ProteinIntegerCode
- ~ProteinPeptideList() : ProteinPeptideList
- ~ProteinPresenceAbsenceMatrix() : pappso::ProteinPresenceAbsenceMatrix
- ~PsmFeatures() : pappso::PsmFeatures
- ~PwizMsFileReader() : pappso::PwizMsFileReader
- ~PwizMsRunReader() : pappso::PwizMsRunReader
- ~QCPSpectrum() : pappso::QCPSpectrum
- ~QCPXic() : pappso::QCPXic
- ~QualifiedMassSpectrum() : pappso::QualifiedMassSpectrum
- ~QualifiedXic() : pappso::QualifiedXic
- ~ResPrecision() : pappso::ResPrecision
- ~ScoreValues() : pappso::specglob::ScoreValues
- ~SelectionPolygon() : pappso::SelectionPolygon
- ~SelfSpectrum() : pappso::specself::SelfSpectrum
- ~SpectralAlignment() : pappso::specglob::SpectralAlignment
- ~SpecTree() : pappso::spectree::SpecTree
- ~SpecXtractInterface() : pappso::spectree::SpecXtractInterface
- ~SpecXtractMap() : pappso::spectree::SpecXtractMap
- ~SwitchWidget() : pappso::SwitchWidget
- ~TandemWrapperRun() : pappso::TandemWrapperRun
- ~TicXicChromDriftSpecColorMapPlotWidget() : pappso::TicXicChromDriftSpecColorMapPlotWidget
- ~TicXicChromMassSpecColorMapPlotWidget() : pappso::TicXicChromMassSpecColorMapPlotWidget
- ~TicXicChromTracePlotWidget() : pappso::TicXicChromTracePlotWidget
- ~TimsBinDec() : pappso::TimsBinDec
- ~TimsData() : pappso::TimsData
- ~TimsDdaPrecursors() : pappso::TimsDdaPrecursors
- ~TimsDiaSlices() : pappso::TimsDiaSlices
- ~TimsDirectXicExtractor() : pappso::TimsDirectXicExtractor
- ~TimsFrame() : pappso::TimsFrame
- ~TimsFrameBase() : pappso::TimsFrameBase
- ~TimsFrameMobilityTraces() : pappso::TimsFrameMobilityTraces
- ~TimsFrameRawDataChunck() : pappso::TimsFrameRawDataChunck
- ~TimsFramesMsRunReader() : pappso::TimsFramesMsRunReader
- ~TimsFrameType1() : pappso::TimsFrameType1
- ~TimsMs2CentroidFilter() : pappso::TimsMs2CentroidFilter
- ~TimsMsFileReader() : pappso::TimsMsFileReader
- ~TimsMsRunReader() : pappso::TimsMsRunReader
- ~TimsMsRunReaderBase() : pappso::TimsMsRunReaderBase
- ~TimsMsRunReaderDia() : pappso::TimsMsRunReaderDia
- ~TimsMsRunReaderMs2() : pappso::TimsMsRunReaderMs2
- ~TimsMsRunReaderMs2Selected() : pappso::TimsMsRunReaderMs2Selected
- ~TimsXicExtractorInterface() : pappso::TimsXicExtractorInterface
- ~Trace() : pappso::Trace
- ~TraceCombiner() : pappso::TraceCombiner
- ~TraceDetectionMoulon() : pappso::TraceDetectionMoulon
- ~TraceDetectionZivy() : pappso::TraceDetectionZivy
- ~TraceMinusCombiner() : pappso::TraceMinusCombiner
- ~TracePeak() : pappso::TracePeak
- ~TracePeakList() : pappso::TracePeakList
- ~TracePlusCombiner() : pappso::TracePlusCombiner
- ~Translater() : pappso::MzxmlOutput::Translater
- ~UiMonitorText() : pappso::UiMonitorText
- ~UiMonitorTextPercent() : pappso::UiMonitorTextPercent
- ~WrapTandemInput() : pappso::WrapTandemInput
- ~WrapTandemResults() : pappso::WrapTandemResults
- ~Xic() : pappso::Xic
- ~XicCoord() : pappso::XicCoord
- ~XicCoordTims() : pappso::XicCoordTims
- ~XicPeptideFragmentIon() : pappso::XicPeptideFragmentIon
- ~XicPeptideFragmentIonNaturalIsotope() : pappso::XicPeptideFragmentIonNaturalIsotope
- ~XicPeptideInterface() : pappso::XicPeptideInterface
- ~XicWidget() : pappso::XicWidget
- ~XmlStreamReaderInterface() : pappso::XmlStreamReaderInterface
- ~XtandemHyperscore() : pappso::XtandemHyperscore
- ~XtandemHyperscoreBis() : pappso::XtandemHyperscoreBis
- ~XtandemPresetReader() : pappso::XtandemPresetReader
- ~XtandemSpectrumProcess() : pappso::XtandemSpectrumProcess
- ~XyMsFileReader() : pappso::XyMsFileReader
- ~XyMsRunReader() : pappso::XyMsRunReader