Loading...
Searching...
No Matches
Here is a list of all functions with links to the classes they belong to:

### - p -

- PappsoException() : pappso::PappsoException
- parse() : pappso::FastaReader, pappso::OboPsiMod
- parseDefinitionLabel() : pappso::OboTermForm
- parseFastaFile() : pappso::FastaFileIndexer
- parseFixedModification() : pappso::PeptideModificatorPipeline
- parseLabeledModification() : pappso::PeptideModificatorPipeline
- parseLine() : pappso::OboPsiModTerm
- parseMassSpectrumLine() : pappso::BafAsciiMsRunReader
- parseNoConstString() : pappso::PeptideProFormaParser, pappso::PeptideStrParser
- parseOnlyOne() : pappso::FastaReader
- parsePotentialModification() : pappso::PeptideModificatorPipeline
- parseString() : pappso::PeptideProFormaParser, pappso::PeptideStrParser
- parseStringToPeptide() : pappso::PeptideProFormaParser, pappso::PeptideStrParser
- peakChanged() : pappso::MassSpectrumWidget
- peakChangeEvent() : pappso::MassSpectrumWidget
- PeakIonIsotopeMatch() : pappso::PeakIonIsotopeMatch
- PeakIonMatch() : pappso::PeakIonMatch
- Peptide() : pappso::Peptide
- peptideAnnotate() : pappso::MassSpectrumWidget
- PeptideBuilder() : pappso::PeptideBuilder
- PeptideFixedModificationBuilder() : pappso::PeptideFixedModificationBuilder
- PeptideFragment() : pappso::PeptideFragment
- PeptideFragmentIon() : pappso::PeptideFragmentIon
- PeptideFragmentIonListBase() : pappso::PeptideFragmentIonListBase
- PeptideIsotopeSpectrumMatch() : pappso::PeptideIsotopeSpectrumMatch
- peptideListSize() : pappso::GrpSubGroup
- PeptideMethioninRemove() : pappso::PeptideMethioninRemove
- PeptideModel() : pappso::specglob::PeptideModel
- PeptideModificatorBase() : pappso::PeptideModificatorBase
- PeptideModificatorPipeline() : pappso::PeptideModificatorPipeline
- PeptideModificatorTee() : pappso::PeptideModificatorTee
- PeptideNaturalIsotope() : pappso::PeptideNaturalIsotope
- PeptideNaturalIsotopeAverage() : pappso::PeptideNaturalIsotopeAverage
- PeptideNaturalIsotopeList() : pappso::PeptideNaturalIsotopeList
- PeptideRawFragmentMasses() : pappso::PeptideRawFragmentMasses
- PeptideSemiEnzyme() : pappso::PeptideSemiEnzyme
- PeptideSizeFilter() : pappso::PeptideSizeFilter
- PeptideSpectrum() : pappso::specglob::PeptideSpectrum
- PeptideSpectrumMatch() : pappso::PeptideSpectrumMatch
- PeptideVariableModificationBuilder() : pappso::PeptideVariableModificationBuilder
- PeptideVariableModificationReplacement() : pappso::PeptideVariableModificationReplacement
- plot() : pappso::MassSpectrumWidget, pappso::XicWidget
- plotRangesChangedSignal() : pappso::BasePlotWidget
- plottableDestructionRequestedSignal() : pappso::BasePlotWidget
- plottableSelectionChangedSignal() : pappso::BasePlotWidget
- pointerToString() : pappso::Utils
- postExtractionProcess() : pappso::MsRunXicExtractorInterface
- PostTreatment() : pappso::specglob::PostTreatment
- PpmPrecision() : pappso::PpmPrecision
- PrecisionBase() : pappso::PrecisionBase
- precisionChanged() : pappso::PrecisionWidget
- PrecisionWidget() : pappso::PrecisionWidget
- PrecursorIonData() : pappso::PrecursorIonData
- precursorIonNodesByPrecursorMz() : pappso::MsRunDataSetTreeNode
- precursorNodeByProductSpectrumIndex() : pappso::MsRunDataSetTree
- precursorNodesByPrecursorMz() : pappso::MsRunDataSetTree
- prepareExtractor() : pappso::MsRunXicExtractorDisk
- printInfos() : pappso::GrpMapPeptideToSubGroupSet, pappso::GrpPeptideSet, pappso::GrpSubGroupSet
- privAddFixedModificationString() : pappso::PeptideModificatorPipeline
- privAddPotentialModificationString() : pappso::PeptideModificatorPipeline
- privContainsAll() : pappso::GrpPeptideSet
- privMatchIonList() : pappso::PeptideSpectrumMatch
- process() : pappso::XtandemSpectrumProcess
- process_group_note() : pappso::WrapTandemResults
- processDriftTime() : pappso::PwizMsRunReader
- processRetentionTime() : pappso::PwizMsRunReader
- productNodesByPrecursorMz() : pappso::MsRunDataSetTreeNode
- productNodesByPrecursorSpectrumIndex() : pappso::MsRunDataSetTree
- protectedExtractXicCoordSPtrList() : pappso::MsRunXicExtractor, pappso::MsRunXicExtractorDisk, pappso::MsRunXicExtractorInterface, pappso::TimsDirectXicExtractor
- Protein() : pappso::Protein
- ProteinIntegerCode() : pappso::ProteinIntegerCode
- ProteinPeptideList() : ProteinPeptideList
- ProteinPresenceAbsenceMatrix() : pappso::ProteinPresenceAbsenceMatrix
- PsmFeatures() : pappso::PsmFeatures
- push_back() : pappso::GrpProtein, pappso::spectree::Bucket
- pushBackIonMasses() : pappso::PeptideRawFragmentMasses
- pushBackIonMz() : pappso::PeptideRawFragmentMasses
- pushBackMatchSpectrum() : pappso::PeptideRawFragmentMasses
- PwizMsFileReader() : pappso::PwizMsFileReader
- PwizMsRunReader() : pappso::PwizMsRunReader