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filterobopsimodtermlabel.cpp
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#include <QDebug>
#include "filterobopsimodtermlabel.h"
namespace pappso
{
FilterOboPsiModTermLabel::FilterOboPsiModTermLabel(
OboPsiModHandlerInterface &sink, const QString &label_search)
: m_sink(sink)
{
m_labelMatch.setPattern(QString(label_search).replace("*", "(.*)"));
m_labelMatch.setPatternOptions(QRegularExpression::CaseInsensitiveOption);
}
FilterOboPsiModTermLabel::~FilterOboPsiModTermLabel()
{
}
FilterOboPsiModTermLabel::FilterOboPsiModTermLabel(
const FilterOboPsiModTermLabel &other)
: m_labelMatch(other.m_labelMatch), m_sink(other.m_sink)
{
}
void
FilterOboPsiModTermLabel::setOboPsiModTerm(const OboPsiModTerm &term)
{
// qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
if(m_labelMatch.match(term.m_psiModLabel).hasMatch())
{
m_sink.setOboPsiModTerm(term);
}
else if(m_labelMatch.match(term.m_psiMsLabel).hasMatch())
{
m_sink.setOboPsiModTerm(term);
}
}
} // namespace pappso
pappso::FilterOboPsiModTermLabel
Definition filterobopsimodtermlabel.h:33
pappso::FilterOboPsiModTermLabel::~FilterOboPsiModTermLabel
virtual ~FilterOboPsiModTermLabel()
Definition filterobopsimodtermlabel.cpp:39
pappso::FilterOboPsiModTermLabel::FilterOboPsiModTermLabel
FilterOboPsiModTermLabel(OboPsiModHandlerInterface &sink, const QString &label_search)
Definition filterobopsimodtermlabel.cpp:31
pappso::FilterOboPsiModTermLabel::m_labelMatch
QRegularExpression m_labelMatch
Definition filterobopsimodtermlabel.h:35
pappso::FilterOboPsiModTermLabel::m_sink
OboPsiModHandlerInterface & m_sink
Definition filterobopsimodtermlabel.h:36
pappso::FilterOboPsiModTermLabel::setOboPsiModTerm
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
Definition filterobopsimodtermlabel.cpp:50
pappso::OboPsiModHandlerInterface
Definition obopsimodhandlerinterface.h:31
pappso::OboPsiModHandlerInterface::setOboPsiModTerm
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
pappso::OboPsiModTerm
Definition obopsimodterm.h:32
pappso::OboPsiModTerm::m_psiModLabel
QString m_psiModLabel
Definition obopsimodterm.h:51
pappso::OboPsiModTerm::m_psiMsLabel
QString m_psiMsLabel
Definition obopsimodterm.h:52
filterobopsimodtermlabel.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39