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filterobopsimodtermdiffmono.cpp
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#include "filterobopsimodtermdiffmono.h"
namespace pappso
{
FilterOboPsiModTermDiffMono::FilterOboPsiModTermDiffMono(
OboPsiModHandlerInterface &sink, const MzRange &mass_range)
: m_massRange(mass_range), m_sink(sink)
{
}
FilterOboPsiModTermDiffMono::~FilterOboPsiModTermDiffMono()
{
}
void
FilterOboPsiModTermDiffMono::setOboPsiModTerm(const OboPsiModTerm &term)
{
// qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
if(m_massRange.contains(term.m_diffMono))
{
m_sink.setOboPsiModTerm(term);
}
}
} // namespace pappso
pappso::FilterOboPsiModTermDiffMono::m_massRange
const MzRange m_massRange
Definition filterobopsimodtermdiffmono.h:39
pappso::FilterOboPsiModTermDiffMono::~FilterOboPsiModTermDiffMono
virtual ~FilterOboPsiModTermDiffMono()
Definition filterobopsimodtermdiffmono.cpp:35
pappso::FilterOboPsiModTermDiffMono::FilterOboPsiModTermDiffMono
FilterOboPsiModTermDiffMono(OboPsiModHandlerInterface &sink, const MzRange &mass_range)
Definition filterobopsimodtermdiffmono.cpp:29
pappso::FilterOboPsiModTermDiffMono::setOboPsiModTerm
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
Definition filterobopsimodtermdiffmono.cpp:40
pappso::FilterOboPsiModTermDiffMono::m_sink
OboPsiModHandlerInterface & m_sink
Definition filterobopsimodtermdiffmono.h:40
pappso::MzRange
Definition mzrange.h:46
pappso::MzRange::contains
bool contains(pappso_double) const
Definition mzrange.cpp:120
pappso::OboPsiModHandlerInterface
Definition obopsimodhandlerinterface.h:31
pappso::OboPsiModHandlerInterface::setOboPsiModTerm
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
pappso::OboPsiModTerm
Definition obopsimodterm.h:32
pappso::OboPsiModTerm::m_diffMono
double m_diffMono
Definition obopsimodterm.h:57
filterobopsimodtermdiffmono.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39