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fastahandlerinterface.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include <QString>
#include "../exportinmportconfig.h"
namespace pappso
{
class FastaHandlerInterface
{
public:
virtual void setSequence(const QString &description,
const QString &sequence) = 0;
};
class FastaSeqHandler : public pappso::FastaHandlerInterface
{
public:
const QString &
getDescription() const
{
return description;
};
const QString &
getSequence() const
{
return sequence;
};
void
setSequence(const QString &description_in,
const QString &sequence_in) override
{
description = description_in;
sequence = sequence_in;
};
private:
QString description;
QString sequence;
};
} // namespace pappso
pappso::FastaHandlerInterface
Definition fastahandlerinterface.h:32
pappso::FastaHandlerInterface::setSequence
virtual void setSequence(const QString &description, const QString &sequence)=0
pappso::FastaSeqHandler
Definition fastahandlerinterface.h:40
pappso::FastaSeqHandler::description
QString description
Definition fastahandlerinterface.h:61
pappso::FastaSeqHandler::getSequence
const QString & getSequence() const
Definition fastahandlerinterface.h:48
pappso::FastaSeqHandler::setSequence
void setSequence(const QString &description_in, const QString &sequence_in) override
Definition fastahandlerinterface.h:53
pappso::FastaSeqHandler::getDescription
const QString & getDescription() const
Definition fastahandlerinterface.h:43
pappso::FastaSeqHandler::sequence
QString sequence
Definition fastahandlerinterface.h:62
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39