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Here is a list of all class members with links to the classes they belong to:

### - m -

- m : pappso::SavGolParams
- m_aaCode : pappso::AaStringCodec, pappso::AaStringCodeMassMatching
- m_aaCodec : pappso::AaStringCodeMassMatching
- m_aaCollection : pappso::AaCode
- m_aaIonFactorBb : pappso::XtandemHyperscoreBis
- m_aaIonFactorY : pappso::XtandemHyperscoreBis
- m_aaLetter : pappso::AaBase
- m_aaMassMap : pappso::AaBase
- m_aaModificationList : pappso::PeptideFixedModificationBuilder, pappso::PeptideVariableModificationBuilder
- m_aaNumberOfCarbonMap : pappso::AaBase
- m_aaNumberOfHydrogenMap : pappso::AaBase
- m_aaNumberOfNitrogenMap : pappso::AaBase
- m_aaNumberOfOxygenMap : pappso::AaBase
- m_aaNumberOfSulfurMap : pappso::AaBase
- m_aaVec : pappso::Peptide
- m_abundanceRatio : pappso::PeptideNaturalIsotopeAverage
- m_accession : pappso::AaModification, pappso::FilterOboPsiModTermAccession, pappso::GrpProtein, pappso::OboPsiModTerm, pappso::Protein
- m_acqDurationInMilliseconds : pappso::TimsFrameBase
- m_alignedRetentionTimeVector : pappso::MsRunRetentionTime< T >
- m_allMs2Points : pappso::MsRunRetentionTime< T >
- m_aminoAcidCharList : pappso::AaBase
- m_arbitrary_minimum_mz : pappso::FilterTandemDeisotope
- m_arbitrary_range_between_isotopes : pappso::FilterTandemDeisotope
- m_area : pappso::TracePeak
- m_arrMasses : pappso::MzCalibrationModel1Cached
- m_asciiTable : pappso::AaCode
- m_atomCount : pappso::AaModification
- m_averageMz : pappso::PeptideNaturalIsotopeAverage
- m_axisLabelX : pappso::BasePlotWidget
- m_axisLabelY : pappso::BasePlotWidget
- m_base : pappso::AaStringCodec, pappso::AaStringCodeMassMatching
- m_beginMassDelta : pappso::specglob::PeptideModel
- m_BETTER_END_RA : pappso::specglob::SpectralAlignment
- m_betterPeptideModel : pappso::specglob::PostTreatment
- m_binaryData : pappso::TimsFrame
- m_binningType : pappso::MzIntegrationParams
- m_bins : pappso::MassSpectrumCombiner
- m_binSizeDivisor : pappso::MzIntegrationParams
- m_bucketMap : pappso::spectree::BucketClustering
- m_bufferMaxSize : pappso::MsRunXicExtractorDiskBuffer
- m_bufferSize : pappso::MsRunXicExtractorDiskBuffer
- m_builtinMs2Centroid : pappso::TimsDdaPrecursors, pappso::TimsDiaSlices, pappso::TimsMsRunReaderMs2
- m_cacheSize : pappso::TimsData
- m_cartList : pappso::spectree::Bucket
- m_chargeMinimalFractionalPart : pappso::MassSpecTracePlotWidget
- m_chargeStateEnvelopePeakSpan : pappso::MassSpecTracePlotWidget
- m_children : pappso::MsRunDataSetTreeNode
- m_clusters : pappso::FilterLowIntensitySignalRemoval
- m_codeMassList : pappso::AaStringCodeMassMatching
- m_colorMapPlotConfig : pappso::BaseColorMapPlotWidget
- m_context : pappso::BasePlotWidget, pappso::MassSpecTracePlotWidget
- m_conversionTime : pappso::TandemWrapperRun
- m_convertMzDataUsingSpectrumIndex : pappso::TandemWrapperRun
- m_count : pappso::GrpProtein, pappso::UiMonitorText
- m_countMsLevelSpectrum : pappso::MsRunSimpleStatistics
- m_countNote : pappso::XtandemPresetReader
- m_countSharedPeaks : pappso::specglob::PeptideModel
- m_cterModification : pappso::specglob::PeptideModel
- m_cumulativeCterMasses : pappso::PeptideRawFragmentMasses
- m_cumulativeNterMasses : pappso::PeptideRawFragmentMasses
- m_curApex : pappso::FilterLowIntensitySignalRemoval
- m_curIter : pappso::FilterLowIntensitySignalRemoval
- m_currentDragPoint : pappso::BasePlotContext
- m_currentProtein : pappso::GrpGroupingMonitor
- m_data : pappso::LinearRegression
- m_dataKind : pappso::BasePlotContext
- m_dataKindX : pappso::IntegrationScope, pappso::IntegrationScopeRhomb
- m_dataKindY : pappso::IntegrationScopeRect, pappso::IntegrationScopeRhomb
- m_decimalPlaces : pappso::MassDataCombinerInterface, pappso::MzIntegrationParams
- m_decompressMemoryBufferSize : pappso::TimsBinDec
- m_definition : pappso::OboPsiModTerm
- m_delta : pappso::MzRange
- m_desc : pappso::BasePlotWidget
- m_description : pappso::GrpProtein, pappso::Protein
- m_destinationMzXmlFileName : pappso::WrapTandemInput
- m_destinationTandemInputFile : pappso::WrapTandemInput
- m_destinationTandemInputFileName : pappso::WrapTandemInput
- m_destinationTandemOutputFile : pappso::WrapTandemResults
- m_destinationTandemOutputFileName : pappso::WrapTandemInput
- m_detectionThresholdOnMaxMin : pappso::TraceDetectionZivy
- m_detectionThresholdOnMinMax : pappso::TraceDetectionZivy
- m_diffC12C13_z1 : pappso::FilterChargeDeconvolution, pappso::FilterRemoveC13
- m_diffC12C13_z2 : pappso::FilterChargeDeconvolution, pappso::FilterRemoveC13
- m_diffFormula : pappso::OboPsiModTerm
- m_diffMono : pappso::OboPsiModTerm
- m_digitizerDelay : pappso::MzCalibrationInterface
- m_digitizerTimebase : pappso::MzCalibrationInterface
- m_direction : pappso::PeptideFragment
- m_dragDirections : pappso::BasePlotContext
- m_dt : pappso::QualifiedMassSpectrum
- m_dtDoubleNodeVectorMap : pappso::MsRunDataSetTree
- m_dynamic : pappso::FilterRescaleY
- m_exclusionPrecision : pappso::FilterMzExclusion
- m_experimentalPrecursorMass : pappso::specglob::PeptideModel
- m_factor : pappso::FilterScaleFactorY
- m_fasta_file : pappso::FastaFileIndexer
- m_fileFormat : pappso::MsFileAccessor, pappso::MsFileReader
- m_fileName : pappso::BafAsciiMsRunReader, pappso::BasePlotWidget, pappso::MsFileAccessor, pappso::MsFileReader, pappso::MsRunId, pappso::XyMsRunReader
- m_fileReaderType : pappso::MsFileAccessor
- m_filter_floor : pappso::XtandemSpectrumProcess
- m_filter_highpass : pappso::XtandemSpectrumProcess
- m_filter_keep_greater : pappso::XtandemSpectrumProcess
- m_filter_remove_c13 : pappso::XtandemSpectrumProcess
- m_filter_rescale : pappso::XtandemSpectrumProcess
- m_filterGreatestY : pappso::MassSpectrumFilterGreatestItensities
- m_filterMax : pappso::FilterMorphoMaxMin, pappso::FilterMorphoMinMax
- m_filterMin : pappso::FilterMorphoMaxMin, pappso::FilterMorphoMinMax
- m_filterMorphoMedian : pappso::FilterMorphoBackground
- m_filterMorphoMinMax : pappso::FilterMorphoBackground
- m_filterRange : pappso::MassSpectrumFilterResampleKeepMzRange, pappso::MassSpectrumFilterResampleRemoveMzRange
- m_filterVector : pappso::FilterSuiteString
- m_findExactPsiModLabel : pappso::OboPsiModTerm
- m_findExternalLinks : pappso::OboTermForm
- m_findRelatedPsiMsLabel : pappso::OboPsiModTerm
- m_firstFrameId : pappso::TimsBinDec
- m_firstParse : pappso::OboPsiModTerm
- m_fixedModificationList : pappso::PeptideBuilder
- m_focusedBrush : pappso::BasePlotWidget
- m_focusedColor : pappso::BasePlotWidget
- m_formula : pappso::OboPsiModTerm
- m_frameCount : pappso::TimsData
- m_frameId : pappso::FrameIdDescr, pappso::TimsFrameBase, pappso::TimsFrameRawDataChunck
- m_frameId2GlobalSliceIndexBegin : pappso::TimsDiaSlices
- m_frameIdDescrList : pappso::TimsData
- m_frameLength : pappso::TimsFrameRawDataChunck
- m_frameNumberOfScans : pappso::TimsFrameRawDataChunck
- m_frameSliceRangeList : pappso::TimsDiaSlices
- m_globalScanIndex : pappso::FrameIdDescr
- m_greatestMz : pappso::FilterResampleKeepPointInPolygon, pappso::MzIntegrationParams
- m_groupNumber : pappso::GrpGroup, pappso::GrpPeptide, pappso::GrpProtein, pappso::GrpSubGroup
- m_grpGroupSpList : pappso::GrpExperiment
- m_grpPeptideList : pappso::GrpExperiment
- m_grpPeptidePtrList : pappso::GrpProtein
- m_grpPostGroupingProteinListRemoval : pappso::GrpExperiment
- m_grpPreGroupingProteinListRemoval : pappso::GrpExperiment
- m_grpProteinList : pappso::GrpExperiment
- m_grpProteinPtrList : pappso::GrpSubGroup
- m_grpSubGroupPtrList : pappso::GrpSubGroupSet
- m_halfWindowSize : pappso::FilterLocalMaximum, pappso::FilterMorphoAntiSpike, pappso::FilterMorphoWindowBase
- m_handler : pappso::FastaReader, pappso::OboPsiMod
- m_hasScanNumbers : pappso::PwizMsRunReader
- m_height : pappso::IntegrationScopeRect
- m_id : pappso::spectree::ItemCart
- m_indexArray : pappso::FastaFileIndexer
- m_indexNodeMap : pappso::MsRunDataSetTree
- m_instance : pappso::MsRunXicExtractorFactory
- m_integrationScopeRhombHeight : pappso::BasePlotContext
- m_integrationScopeRhombWidth : pappso::BasePlotContext
- m_integrationScopeSpecs : pappso::FilterResampleKeepPointInPolygon
- m_intensityExperimentalPeaks : pappso::specglob::PeptideModel
- m_intensitySharedPeaks : pappso::specglob::PeptideModel
- m_intercept : pappso::LinearRegression
- m_ionCount : pappso::XtandemHyperscoreBis
- m_ionDeltaMz : pappso::PeptideRawFragmentMasses
- m_ionIsotopeRatioScore : pappso::IonIsotopeRatioScore
- m_ionList : pappso::PeptideFragmentIonListBase, pappso::PsmFeatures, pappso::XtandemHyperscoreBis
- m_ionMobTraceList : pappso::TimsFrameMobilityTraces
- m_ionType : pappso::PeptideFragmentIon
- m_isA : pappso::OboPsiModTerm
- m_isComplement : pappso::specself::SelfSpectrumDataPoint
- m_isEmptyMassSpectrum : pappso::QualifiedMassSpectrum
- m_isExcludeParent : pappso::XtandemSpectrumProcess
- m_isExcludeParent_lower_dalton : pappso::XtandemSpectrumProcess
- m_isExcludeParent_neutral_loss : pappso::XtandemSpectrumProcess
- m_isExcludeParent_upper_dalton : pappso::XtandemSpectrumProcess
- m_isGroupingStarted : pappso::GrpExperiment
- m_isKeyBoardDragging : pappso::BasePlotContext
- m_isLeftPseudoButtonKeyPressed : pappso::BasePlotContext
- m_isMeasuringDistance : pappso::BasePlotContext
- m_isMonoThread : pappso::MsRunReader, pappso::TimsDdaPrecursors
- m_isMouseDragging : pappso::BasePlotContext
- m_isotopeLevel : pappso::PeptideNaturalIsotopeAverage
- m_isotopeRank : pappso::PeptideNaturalIsotopeAverage
- m_isPeakListNeeded : pappso::MsRunReadConfig
- m_isPotential : pappso::PeptideMethioninRemove
- m_isProtCterMod : pappso::PeptideFixedModificationBuilder, pappso::PeptideVariableModificationBuilder
- m_isProtElseMod : pappso::PeptideFixedModificationBuilder, pappso::PeptideVariableModificationBuilder
- m_isProtNterMod : pappso::PeptideFixedModificationBuilder, pappso::PeptideVariableModificationBuilder
- m_isReadAhead : pappso::MzxmlOutput, pappso::SpectrumCollectionHandlerInterface
- m_isRefineSpectrumModel : pappso::XtandemSpectrumProcess
- m_isRefineSpectrumSynthesis : pappso::XtandemHyperscoreBis
- m_isRemoveIsotope : pappso::XtandemSpectrumProcess
- m_isRemoveNonInformativeSubgroups : pappso::GrpExperiment
- m_isRightPseudoButtonKeyPressed : pappso::BasePlotContext
- m_itemCartCount : pappso::spectree::BucketClustering
- m_itemId : pappso::spectree::Bucket
- m_itemList : pappso::spectree::ItemCart
- m_itPosMax : pappso::specglob::SpectralAlignment
- m_keyboardModifiers : pappso::BasePlotContext
- m_labelMatch : pappso::FilterOboPsiModTermLabel
- m_lastAxisRangeHistoryIndex : pappso::BasePlotWidget
- m_lastCursorHoveredPoint : pappso::BasePlotContext
- m_lastFrameId : pappso::TimsBinDec
- m_lastMr : pappso::MassSpecTracePlotContext
- m_lastMz : pappso::MassSpecTracePlotContext
- m_lastPressedMouseButton : pappso::BasePlotContext
- m_lastReleasedMouseButton : pappso::BasePlotContext
- m_lastResolvingPower : pappso::MassSpecTracePlotContext
- m_lastTicIntensity : pappso::MassSpecTracePlotContext
- m_lastZ : pappso::MassSpecTracePlotContext
- m_left : pappso::TracePeak
- m_leftMousePseudoButtonKey : pappso::BasePlotWidget
- m_length : pappso::Protein
- m_linearAccessRawDataChunckDequeSize : pappso::TimsBinDec
- m_linearAccessRawDataChunckList : pappso::TimsBinDec
- m_linearForwardThreshold : pappso::TimsBinDec
- m_listMod : pappso::Aa
- m_lowestMz : pappso::FilterResampleKeepPointInPolygon
- m_mapAccessionModifications : pappso::AaModification
- m_mapCorrectionsStart : pappso::IonMobilityGrid
- m_mapCorrectionsStop : pappso::IonMobilityGrid
- m_mapDalton : pappso::PrecisionFactory
- m_mapDiferrencesStart : pappso::IonMobilityGrid
- m_mapDiferrencesStop : pappso::IonMobilityGrid
- m_mapFrame2WindowGroupPtr : pappso::TimsDiaSlices
- m_mapFramesRecord : pappso::TimsData
- m_mapIsotope : pappso::AaModification, pappso::PeptideNaturalIsotope
- m_mapMzCalibrationRecord : pappso::TimsData
- m_mapMzCalibrationSPtr : pappso::MzCalibrationStore
- m_mapPeptides : pappso::GrpExperiment
- m_mapPeptideToGroup : pappso::GrpMapPeptideToGroup
- m_mapPeptideToSubGroupSet : pappso::GrpGroup, pappso::GrpMapPeptideToSubGroupSet
- m_mapPpm : pappso::PrecisionFactory
- m_mapProteins : pappso::GrpExperiment
- m_mapRes : pappso::PrecisionFactory
- m_mapSimilarities : pappso::spectree::SpecXtractMap
- m_mapTandemInputParameters : pappso::WrapTandemResults
- m_mapTimsCalibrationRecord : pappso::TimsData
- m_mapXicCoordRecord : pappso::TimsDdaPrecursors
- m_mass : pappso::AaModification, pappso::GrpPeptide, pappso::PeptideFragment, pappso::PeptideFragmentIon, pappso::PeptideNaturalIsotope
- m_massCollection : pappso::AaCode
- m_massMono : pappso::OboPsiModTerm
- m_massRange : pappso::FilterOboPsiModTermDiffMono
- m_massSpectrumId : pappso::QualifiedMassSpectrum
- m_matchedMzDiffMean : pappso::PsmFeatures
- m_matchedMzDiffMedian : pappso::PsmFeatures
- m_matchedMzDiffSd : pappso::PsmFeatures
- m_matrix : pappso::specglob::SpectralAlignment, pappso::specself::SelfSpectrum
- m_max : pappso::FilterLowIntensitySignalRemoval, pappso::MzCalibrationModel1Cached, pappso::TracePeak
- m_maxMin : pappso::TraceDetectionZivy
- m_maxMz : pappso::MsRunXicExtractorDisk
- m_maxMzRange : pappso::FilterTriangle
- m_maxNumberMod : pappso::PeptideVariableModificationBuilder
- m_maxPeptideVariantListSize : pappso::Enzyme
- m_maxScore : pappso::specglob::SpectralAlignment
- m_maxSize : pappso::PeptideSizeFilter
- m_maxTandemRunTimeMs : pappso::TandemWrapperRun
- m_maxX : pappso::FilterResampleKeepXRange, pappso::FilterResampleRemoveXRange, pappso::SelectionPolygon
- m_maxY : pappso::SelectionPolygon
- m_memoryBufferSize : pappso::TimsFrameRawDataChunck
- m_message : pappso::PappsoException
- m_min : pappso::FilterLowIntensitySignalRemoval
- m_minIntPointCount : pappso::FilterLowIntensitySignalRemoval
- m_minIntStdDevFactor : pappso::FilterLowIntensitySignalRemoval
- m_minMax : pappso::TraceDetectionZivy
- m_minMean : pappso::FilterLowIntensitySignalRemoval
- m_minMz : pappso::MsRunXicExtractorDisk
- m_minNumberMod : pappso::PeptideVariableModificationBuilder
- m_minSize : pappso::PeptideSizeFilter
- m_minStdDev : pappso::FilterLowIntensitySignalRemoval
- m_minX : pappso::FilterResampleKeepXRange, pappso::FilterResampleRemoveXRange, pappso::SelectionPolygon
- m_minY : pappso::SelectionPolygon
- m_miscleavage : pappso::Enzyme
- m_mmap_scan2index : pappso::MsRunReaderScanNumberMultiMap
- m_modificationCount : pappso::PeptideVariableModificationBuilder
- m_monitor : pappso::MzxmlOutput
- m_mouseButtonsAtMousePress : pappso::BasePlotContext
- m_mouseButtonsAtMouseRelease : pappso::BasePlotContext
- m_mouseMoveHandlerSkipAmount : pappso::BasePlotWidget
- m_mouseMoveHandlerSkipCount : pappso::BasePlotWidget
- m_ms1frameIdList : pappso::TimsDiaSlices
- m_ms1IsMasked : pappso::MzxmlOutput
- m_ms1MeanFilter : pappso::MsRunRetentionTime< T >
- m_ms1RetentionTimeVector : pappso::MsRunRetentionTime< T >
- m_ms2frameId2Ms1FrameId : pappso::TimsDiaSlices
- m_ms2MeanFilter : pappso::MsRunRetentionTime< T >
- m_ms2MedianFilter : pappso::MsRunRetentionTime< T >
- m_ms2precision : pappso::PsmFeatures
- m_ms2precisionUnit : pappso::XtandemPresetReader
- m_ms2precisionValue : pappso::XtandemPresetReader
- m_msDataPtrVector : pappso::PwizMsFileReader
- m_msLevel : pappso::QualifiedMassSpectrum
- m_msLevels : pappso::MsRunReadConfig
- m_msMsType : pappso::TimsFrameBase
- m_msMsWindowGroupList : pappso::TimsDiaSlices
- m_msrun_points : pappso::MsRunXicExtractor, pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints
- m_msRunId : pappso::QualifiedXic
- m_msRunSliceListCache : pappso::MsRunXicExtractorDisk
- m_mutex : pappso::AaModification, pappso::MsRunXicExtractorDisk, pappso::PwizMsRunReader, pappso::TimsData, pappso::TimsDdaPrecursors
- m_mz : pappso::MzRange, pappso::QualifiedXic
- m_mzCalibrationArr : pappso::MzCalibrationInterface
- m_mzFormat : pappso::MsRunId, pappso::TandemWrapperRun
- m_mzTarget : pappso::OboListProxyModel
- m_n_most_intense : pappso::XtandemSpectrumProcess
- m_name : pappso::AaModification, pappso::BasePlotWidget, pappso::OboPsiModTerm
- m_nameMatch : pappso::FilterOboPsiModTermName
- m_nativeId : pappso::MassSpectrumId
- m_needPeakListByMsLevel : pappso::SpectrumCollectionHandlerInterface
- m_neutralLossMass : pappso::XtandemSpectrumProcess
- m_neutralLossWindowDalton : pappso::XtandemSpectrumProcess
- m_neutralPhosphoLossNumber : pappso::PeptideFragmentIon
- m_newYMax : pappso::FilterNormalizeIntensities
- m_nodeList : pappso::spectree::SpecTree
- m_noiseLevel : pappso::FilterLowIntensitySignalRemoval
- m_noiseMean : pappso::FilterLowIntensitySignalRemoval
- m_noiseStdDev : pappso::FilterLowIntensitySignalRemoval
- m_nominal : pappso::PrecisionBase
- m_nterCterCleavage : pappso::PeptideFragment
- m_nterModification : pappso::specglob::PeptideModel
- m_numberOfPoints : pappso::FilterGreatestY, pappso::FilterGreatestYperWindow
- m_oboPsiModTerm : pappso::OboTermForm
- m_oboPsiModTermList : pappso::FilterOboPsiModSink, pappso::OboListModel
- m_oboPsiModTermNativeIDFormat : pappso::MsFileAccessor
- m_ofastastream : pappso::FastaOutputStream
- m_oldIndex : pappso::PrecisionWidget
- m_origin : pappso::AaModification, pappso::OboPsiModTerm
- m_originalMsDataFileName : pappso::WrapTandemResults
- m_originalPeptideModel : pappso::specglob::PostTreatment
- m_originMzDataFileName : pappso::WrapTandemInput
- m_originTandemOutpuFileName : pappso::WrapTandemInput
- m_originTandemPresetFileName : pappso::WrapTandemInput
- m_outputStream : pappso::UiMonitorText
- m_params : pappso::FilterSavitzkyGolay
- m_paramsMap : pappso::MsRunReadConfig, pappso::QualifiedMassSpectrum
- m_parentCharge : pappso::PsmFeatures
- m_passY : pappso::FilterHighPass, pappso::FilterLowPass
- m_pattern : pappso::PeptideModificatorBase
- m_peakIonPairs : pappso::PsmFeatures
- m_pen : pappso::BasePlotWidget
- m_pepModificatorPtrList : pappso::PeptideModificatorPipeline
- m_peptide : pappso::PeptideNaturalIsotope
- m_peptideCodedFragments : pappso::ProteinIntegerCode
- m_peptideModPtrList : pappso::PeptideModificatorTee
- m_peptideNaturalIsotopeSpList : pappso::PeptideNaturalIsotopeAverage
- m_peptidePtrList : pappso::GrpPeptideSet, pappso::GrpSubGroup
- m_peptideSet : pappso::GrpGroup
- m_percentage : pappso::FilterCeilingAmplitudePercentage, pappso::FilterFloorAmplitudePercentage
- m_phosphorylationNumber : pappso::PeptideFragmentIonListBase
- m_point : pappso::IntegrationScope
- m_points : pappso::IntegrationScopeRhomb, pappso::SelectionPolygon
- m_preAllocatedFastMapPerThread : pappso::TimsDataFastMap
- m_precision : pappso::AaStringCodeMassMatching, pappso::specglob::PostTreatment
- m_precisionPtr : pappso::FilterComplementIonEnhancer, pappso::FilterRemoveC13, pappso::OboListProxyModel, pappso::specglob::ExperimentalSpectrum, pappso::specglob::SpectralAlignment
- m_precisionPtrZ1 : pappso::FilterChargeDeconvolution
- m_precisionPtrZ2 : pappso::FilterChargeDeconvolution
- m_precursorIonData : pappso::QualifiedMassSpectrum
- m_precursorMass : pappso::specglob::ExperimentalSpectrum
- m_precursorMassDelta : pappso::specglob::SpectralAlignment
- m_precursorNativeId : pappso::QualifiedMassSpectrum
- m_precursorSpectrumIndex : pappso::QualifiedMassSpectrum
- m_precursorTheoreticalMass : pappso::PsmFeatures
- m_precursorTheoreticalMz : pappso::PsmFeatures
- m_preferredFileReaderTypeMap : pappso::MsFileAccessor
- m_presenceAbsenceMatrix : pappso::ProteinPresenceAbsenceMatrix
- m_pressedKeyCode : pappso::BasePlotContext
- m_pressedMouseButtons : pappso::BasePlotContext
- m_prevApex : pappso::FilterLowIntensitySignalRemoval
- m_prevIter : pappso::FilterLowIntensitySignalRemoval
- m_protoHyperscore : pappso::XtandemHyperscoreBis
- m_proxyMass : pappso::Peptide
- m_psiModLabel : pappso::OboPsiModTerm
- m_psiMsLabel : pappso::OboPsiModTerm
- m_qualifiedMassSpectrum : pappso::specglob::ExperimentalSpectrum
- m_qualifiedSpectrumList : pappso::MsRunQualifiedSpectrumLoader
- m_quantile : pappso::FilterQuantileBasedRemoveY
- m_qxmlStreamReader : pappso::XmlStreamReaderInterface
- m_randemAccessFrameRawDataChunck : pappso::TimsBinDec
- m_rank : pappso::GrpPeptide, pappso::GrpProtein
- m_ratio : pappso::PeptideNaturalIsotope
- m_ratioPassY : pappso::FilterHighPassPercentage
- m_recognitionSite : pappso::Enzyme
- m_releasedKeyCode : pappso::BasePlotContext
- m_remainingGrpProteinList : pappso::GrpExperiment
- m_removeTranslationStopRegExp : pappso::Protein
- m_removeZeroValDataPoints : pappso::MzIntegrationParams
- m_retention_time_list : pappso::MsRunReaderRetentionTimeLine
- m_retentionTimeAroundTarget : pappso::MsRunXicExtractorInterface
- m_retentionTimeEndSeconds : pappso::MsRunReadConfig
- m_retentionTimeList : pappso::MsRunXicExtractorDisk
- m_retentionTimeReferenceMethod : pappso::MsRunRetentionTime< T >
- m_retentionTimeStartSeconds : pappso::MsRunReadConfig
- m_right : pappso::TracePeak
- m_rightMousePseudoButtonKey : pappso::BasePlotWidget
- m_rootNodes : pappso::MsRunDataSetTree
- m_rt : pappso::QualifiedMassSpectrum
- m_rtDoubleNodeVectorMap : pappso::MsRunDataSetTree
- m_rtInSeconds : pappso::TimsFrameBase
- m_rtSize : pappso::MsRunXicExtractorDisk
- m_runId : pappso::MsRunId
- m_sampleName : pappso::MsRunId
- m_scanCount : pappso::FrameIdDescr, pappso::TimsFrameBase
- m_scanIndexList : pappso::TimsFrameMobilityTraces
- m_scanOffsetList : pappso::TimsFrameType1
- m_scanSizeList : pappso::TimsFrameType1
- m_scoreTable : pappso::specglob::ScoreValues
- m_scoreValues : pappso::specglob::SpectralAlignment
- m_seamarks : pappso::MsRunRetentionTime< T >
- m_seen_upward_phase : pappso::FilterLowIntensitySignalRemoval
- m_selectionPolygon : pappso::BasePlotContext
- m_seqAaCode : pappso::ProteinIntegerCode
- m_sequence : pappso::GrpPeptide, pappso::Protein
- m_shouldTracersBeVisible : pappso::BasePlotWidget
- m_sink : pappso::FilterOboPsiModTermAccession, pappso::FilterOboPsiModTermDiffMono, pappso::FilterOboPsiModTermLabel, pappso::FilterOboPsiModTermName, pappso::PeptideBuilder, pappso::PeptideFixedModificationBuilder, pappso::PeptideMethioninRemove, pappso::PeptideModificatorPipeline, pappso::PeptideSemiEnzyme, pappso::PeptideSizeFilter, pappso::PeptideVariableModificationBuilder
- m_size : pappso::PeptideFragment
- m_sliceBufferMap : pappso::MsRunXicExtractorDiskBuffer
- m_sliceNumber : pappso::MsRunSlice
- m_slope : pappso::LinearRegression
- m_smallestMz : pappso::MzIntegrationParams
- m_smooth : pappso::TraceDetectionZivy
- m_someoneIsLoadingFrameId : pappso::TimsData
- m_spectrumCount : pappso::BafAsciiMsRunReader, pappso::MsRunDataSetTree
- m_spectrumFirstNodeIndex : pappso::spectree::SpecTree
- m_spectrumIndex : pappso::MassSpectrumId
- m_spectrumList : pappso::MsRunSlice
- m_spectrumSumIntensity : pappso::PsmFeatures
- m_startDragPoint : pappso::BasePlotContext
- m_stdMessage : pappso::PappsoException
- m_subGroupList : pappso::GrpGroup
- m_subGroupNumber : pappso::GrpProtein, pappso::GrpSubGroup
- m_switchButtonValue : pappso::SwitchWidget
- m_takeOnlyFirstWildcard : pappso::Enzyme
- m_tandemBinary : pappso::TandemWrapperRun
- m_tandemVersion : pappso::TandemWrapperRun
- m_targetMzSum : pappso::FilterComplementIonEnhancer, pappso::specglob::ExperimentalSpectrum
- m_temporaryDirectory : pappso::MsRunXicExtractorDisk
- m_term : pappso::OboPsiMod
- m_theoreticalPeakList : pappso::specglob::PeptideModel
- m_thousandIndexToFrameIdDescrListIndex : pappso::TimsData
- m_threads : pappso::XtandemPresetReader
- m_threshold : pappso::FilterLowIntensitySignalRemoval
- m_ticChromMapTrace : pappso::MsRunReaderTicChromatogram
- m_ticStart : pappso::TraceDetectionMoulon
- m_ticStop : pappso::TraceDetectionMoulon
- m_timsBinFile : pappso::TimsBinDec
- m_timsC6 : pappso::TimsFrameBase
- m_timsC7 : pappso::TimsFrameBase
- m_timsCompressionType : pappso::TimsBinDec
- m_timsDataDirectory : pappso::TimsData
- m_timsDvStart : pappso::TimsFrameBase
- m_timsFrameBaseCache : pappso::TimsData
- m_timsFrameCache : pappso::TimsData
- m_timsNdelay : pappso::TimsFrameBase
- m_timsSlope : pappso::TimsFrameBase
- m_timsTtrans : pappso::TimsFrameBase
- m_timsVmax : pappso::TimsFrameBase
- m_timsVmin : pappso::TimsFrameBase
- m_tmpDir : pappso::TandemWrapperRun
- m_tmpDirName : pappso::MsRunXicExtractorFactory
- m_tofIndexList : pappso::TimsFrameMobilityTraces
- m_totalMatchedIons : pappso::XtandemHyperscoreBis
- m_totalNumberPeptide : pappso::GrpGroupingMonitor
- m_totalNumberProtein : pappso::GrpGroupingMonitor
- m_totalPrecursorCount : pappso::TimsDdaPrecursors
- m_totalScanCount : pappso::TimsData
- m_totalSlicesCount : pappso::TimsDiaSlices
- m_totalSteps : pappso::UiMonitorInterface
- m_trace : pappso::specself::SelfSpectrum
- m_triangleSlope : pappso::FilterTriangle
- m_type : pappso::MsRunXicExtractorFactory
- m_unfocusedBrush : pappso::BasePlotWidget
- m_unfocusedColor : pappso::BasePlotWidget
- m_unit : pappso::UiMonitorTextPercent
- m_units : pappso::AaStringCodec
- m_value : pappso::FilterResampleKeepGreater, pappso::FilterResampleKeepSmaller
- m_valuesCorrected : pappso::MsRunRetentionTime< T >
- m_valueToRemove : pappso::FilterRemoveY
- m_wasClickOnXAxis : pappso::BasePlotContext
- m_wasClickOnYAxis : pappso::BasePlotContext
- m_wasMouseDragging : pappso::BasePlotContext
- m_wassKeyBoardDragging : pappso::BasePlotContext
- m_width : pappso::IntegrationScope
- m_wildCardB : pappso::Enzyme
- m_wildCardX : pappso::Enzyme
- m_wildCardZ : pappso::Enzyme
- m_writerXmlTandemInput : pappso::WrapTandemInput
- m_writerXmlTandemOutput : pappso::WrapTandemResults
- m_x : pappso::FilterSavitzkyGolay
- m_xAxisRangeHistory : pappso::BasePlotWidget
- m_xDelta : pappso::BasePlotContext
- m_xicExtractMethod : pappso::MsRunXicExtractorInterface
- m_xicFilterSmoothing : pappso::TraceDetectionMoulon
- m_xmlId : pappso::MsRunId
- m_xmlPrefix : pappso::MsFileAccessor
- m_xRange : pappso::BasePlotContext
- m_xRegionRangeEnd : pappso::BasePlotContext
- m_xRegionRangeStart : pappso::BasePlotContext
- m_xtProcess : pappso::TandemWrapperRun
- m_xWindowRange : pappso::FilterGreatestYperWindow
- m_yAxisRangeHistory : pappso::BasePlotWidget
- m_yDelta : pappso::BasePlotContext
- m_yf : pappso::FilterSavitzkyGolay
- m_yr : pappso::FilterSavitzkyGolay
- m_yRange : pappso::BasePlotContext
- m_yRegionRangeEnd : pappso::BasePlotContext
- m_yRegionRangeStart : pappso::BasePlotContext
- m_z : pappso::PeptideNaturalIsotopeAverage, pappso::XicPeptideInterface
- makeDataPointCstSPtr() : pappso::DataPoint
- makeFastaFileIndexerSPtr() : pappso::FastaFileIndexer
- makeGrpGroupSp() : pappso::GrpGroup
- makeGrpSubGroupSp() : pappso::GrpSubGroup
- makeMapTraceCstSPtr() : pappso::MapTrace
- makeMapTraceSPtr() : pappso::MapTrace
- makeMassSpectrumCstSPtr() : pappso::MassSpectrum
- makeMassSpectrumSPtr() : pappso::MassSpectrum
- makeMsRunSliceSp() : pappso::MsRunSlice
- makeNoConstPeptideSp() : pappso::Peptide
- makePeptideFragmentIonListBaseSp() : pappso::PeptideFragmentIonListBase
- makePeptideFragmentIonSp() : pappso::PeptideFragmentIon
- makePeptideNaturalIsotopeAverageSp() : pappso::PeptideNaturalIsotopeAverage
- makePeptideNaturalIsotopeListSp() : pappso::PeptideNaturalIsotopeList
- makePeptideSp() : pappso::Peptide
- makeProteinSp() : pappso::Protein
- makeQualifiedMassSpectrumCstSPtr() : pappso::QualifiedMassSpectrum
- makeQualifiedMassSpectrumSPtr() : pappso::QualifiedMassSpectrum
- makeTraceCstSPtr() : pappso::Trace
- makeTracePeakCstSPtr() : pappso::TracePeak
- makeTraceSPtr() : pappso::Trace
- makeXicCstSPtr() : pappso::Xic
- makeXicSPtr() : pappso::Xic
- manageSideAccess() : pappso::spectree::SpecTree
- map_id_count : pappso::spectree::SpecTree::MapSimilarityCount
- MapAccessionModifications : pappso::AaModification
- MapDaltonPrecision : pappso::PrecisionFactory
- MapPpmPrecision : pappso::PrecisionFactory
- MapResPrecision : pappso::PrecisionFactory
- mapTofIndexIntensity : pappso::TimsDataFastMap
- MapTrace() : pappso::MapTrace
- maskMs1() : pappso::MzxmlOutput
- mass : pappso::CodeToMass
- mass_difference : pappso::specglob::AminoAcidModel, pappso::specglob::SpectralAlignmentDataPoint
- MassDataCombinerInterface() : pappso::MassDataCombinerInterface
- massDeconvolutionSignal() : pappso::MassSpecTracePlotWidget
- massDelta : pappso::specself::SelfSpectrumDataPoint
- MassSpecTracePlotContext() : pappso::MassSpecTracePlotContext
- MassSpecTracePlotWidget() : pappso::MassSpecTracePlotWidget
- MassSpectrum() : pappso::MassSpectrum
- MassSpectrumCombiner() : pappso::MassSpectrumCombiner
- MassSpectrumCombinerInterface : pappso::Trace
- massSpectrumCstSPtr() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- massSpectrumFilter() : pappso::MassSpectrum
- MassSpectrumFilterGreatestItensities() : pappso::MassSpectrumFilterGreatestItensities
- MassSpectrumFilterResampleKeepMzRange() : pappso::MassSpectrumFilterResampleKeepMzRange
- MassSpectrumFilterResampleRemoveMzRange() : pappso::MassSpectrumFilterResampleRemoveMzRange
- MassSpectrumId() : pappso::MassSpectrumId
- massSpectrumIndex() : pappso::MsRunDataSetTree
- MassSpectrumMinusCombiner() : pappso::MassSpectrumMinusCombiner, pappso::TraceMinusCombiner
- MassSpectrumPlusCombiner() : pappso::MassSpectrumPlusCombiner, pappso::TracePlusCombiner
- massSpectrumSPtr() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- MassSpectrumWidget() : pappso::MassSpectrumWidget, pappso::QCPSpectrum
- match() : pappso::ProteinIntegerCode
- matchExperimentalPeaks() : pappso::specglob::PeptideModel
- matchPeak() : pappso::PeptideInterface, pappso::PeptideNaturalIsotopeAverage
- maxCount() : pappso::GrpSubGroup
- maxIntensityDataPoint() : pappso::MassSpectrum
- maxKeyValue : pappso::ColorMapPlotConfig
- maxMzValue : pappso::ColorMapPlotConfig
- maxX() : pappso::Trace
- maxXDataPoint() : pappso::Trace
- maxY() : pappso::Trace
- maxYDataPoint() : pappso::Trace
- mcsp_experimentalSpectrum : pappso::specglob::SpectralAlignment
- mcsp_massSpectrum : pappso::MsRunDataSetTreeNode
- mcsp_ms1Filter : pappso::TimsDdaPrecursors
- mcsp_ms2Filter : pappso::TimsDdaPrecursors
- mcsp_msRunId : pappso::MassSpectrumId, pappso::MsRunDataSetTree, pappso::MsRunReader
- mcsp_msrunId : pappso::MsRunRetentionTime< T >
- mcsp_peakList : pappso::specglob::PeptideModel
- mcsp_peptideSp : pappso::PeptideNaturalIsotopeAverage
- mcsp_peptideSpectrum : pappso::specglob::SpectralAlignment
- mcsp_postExtractionTraceFilter : pappso::MsRunXicExtractorInterface
- mcsp_selectedMsRunId : pappso::MsFileAccessor
- mcsp_timsFrameCstSPtr : pappso::TimsFrameMobilityTraces
- merge() : pappso::GrpSubGroup
- MgfOutput() : pappso::MgfOutput
- minIntensityDataPoint() : pappso::MassSpectrum
- minKeyValue : pappso::ColorMapPlotConfig
- minMzValue : pappso::ColorMapPlotConfig
- minX() : pappso::Trace
- minXDataPoint() : pappso::Trace
- minY() : pappso::Trace
- minYDataPoint() : pappso::Trace
- mobilityIndexBegin : pappso::TimsFrame::XicComputeStructure
- mobilityIndexEnd : pappso::TimsFrame::XicComputeStructure
- modifCount() : pappso::specglob::PeptideModel
- MorpheusScore() : pappso::MorpheusScore
- mouseMoveEvent() : pappso::QCPSpectrum, pappso::QCPXic
- mouseMoveHandler() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerDraggingCursor() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerLeftButtonDraggingCursor() : pappso::BasePlotWidget
- mouseMoveHandlerNotDraggingCursor() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerRightButtonDraggingCursor() : pappso::BasePlotWidget
- mousePressEvent() : pappso::HttpButton, pappso::QCPSpectrum, pappso::QCPXic
- mousePressHandler() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mousePseudoButtonKeyPressEvent() : pappso::BasePlotWidget
- mousePseudoButtonKeyReleaseEvent() : pappso::BasePlotWidget
- mouseReleaseEvent() : pappso::QCPSpectrum, pappso::QCPXic
- mouseReleaseEventSignal() : pappso::BasePlotWidget, pappso::MassSpecTracePlotWidget
- mouseReleaseHandler() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseReleaseHandlerLeftButton() : pappso::BasePlotWidget
- mouseReleaseHandlerRightButton() : pappso::BasePlotWidget
- mouseWheelEventSignal() : pappso::BasePlotWidget
- mouseWheelHandler() : pappso::BasePlotWidget
- moveLinearReadForward() : pappso::TimsBinDec
- moveMouseCursorGraphCoordToGlobal() : pappso::BasePlotWidget
- moveMouseCursorPixelCoordToGlobal() : pappso::BasePlotWidget
- mp_daltonValueSpinBox : pappso::PrecisionWidget
- mp_fileLinear : pappso::TimsBinDec
- mp_fileRandom : pappso::TimsBinDec
- mp_firstModificator : pappso::PeptideModificatorPipeline
- mp_hPosTracerItem : pappso::BasePlotWidget
- mp_lastPeptideSinkInterface : pappso::PeptideModificatorPipeline
- mp_mod : pappso::PeptideFixedModificationBuilder, pappso::PeptideVariableModificationBuilder
- mp_modAfter : pappso::PeptideVariableModificationReplacement
- mp_monitor : pappso::GrpExperiment, pappso::TandemWrapperRun
- mp_output : pappso::MzxmlOutput::Translater
- mp_outStream : pappso::GrpGroupingMonitor
- mp_parent : pappso::MsRunDataSetTreeNode, pappso::OboListModel::OboPsiModHandler
- mp_peak_bars_precursor : pappso::QCPSpectrum
- mp_peptideModificatorTee : pappso::PeptideModificatorPipeline
- mp_ppmValueSpinBox : pappso::PrecisionWidget
- mp_precision : pappso::CosineSimilarity, pappso::MzIntegrationParams, pappso::PeptideNaturalIsotopeAverage, pappso::QualifiedXic, pappso::XtandemHyperscoreBis
- mp_precisionDalton : pappso::PrecisionWidget
- mp_precisionPpm : pappso::PrecisionWidget
- mp_precisionRes : pappso::PrecisionWidget
- mp_resValueSpinBox : pappso::PrecisionWidget
- mp_selectionRectangeLine1 : pappso::BasePlotWidget
- mp_selectionRectangeLine2 : pappso::BasePlotWidget
- mp_selectionRectangeLine3 : pappso::BasePlotWidget
- mp_selectionRectangeLine4 : pappso::BasePlotWidget
- mp_sourceModel : pappso::OboListProxyModel
- mp_timsData : pappso::TimsXicExtractorInterface
- mp_timsDataOrigin : pappso::TimsDdaPrecursors, pappso::TimsDiaSlices
- mp_timsDdaPrecursors : pappso::TimsMsRunReaderMs2
- mp_timsDiaSlices : pappso::TimsMsRunReaderDia
- mp_unitComboBox : pappso::PrecisionWidget
- mp_vEndTracerItem : pappso::BasePlotWidget
- mp_vPosTracerItem : pappso::BasePlotWidget
- mp_vStartTracerItem : pappso::BasePlotWidget
- mp_xDeltaTextItem : pappso::BasePlotWidget
- mp_yDeltaTextItem : pappso::BasePlotWidget
- mpa_decompressMemoryBuffer : pappso::TimsBinDec
- mpa_memoryBuffer : pappso::TimsFrameRawDataChunck
- mpa_multiMapScanNumber : pappso::MsRunReader
- mpa_mzCalibrationStore : pappso::TimsData
- mpa_oboListModel : pappso::OboListWidget
- mpa_oboListProxyModel : pappso::OboListWidget
- mpa_origColorMapData : pappso::BaseColorMapPlotWidget
- mpa_origColorMapPlotConfig : pappso::BaseColorMapPlotWidget
- mpa_outputStream : pappso::MgfOutput, pappso::MzxmlOutput
- mpa_sequenceTxtIn : pappso::FastaFileIndexer
- mpa_temporaryDirectory : pappso::MsRunXicExtractorDisk, pappso::TandemWrapperRun
- mpa_timsBinDec : pappso::TimsData
- mpa_timsData : pappso::TimsMsRunReaderMs2Selected
- mpa_timsDdaPrecursors : pappso::TimsData
- mpa_timsDiaSlices : pappso::TimsData
- ms1_index : pappso::TimsDdaPrecursors::SpectrumDescr
- ms2_index : pappso::TimsDdaPrecursors::SpectrumDescr
- ms2ReaderGenerateMS1MS2Spectrum() : pappso::TimsDdaPrecursors
- ms2ReaderSpectrumCollectionByMsLevel() : pappso::TimsDdaPrecursors
- msDataFormatAsString() : pappso::Utils
- MsFileAccessor : pappso::BafAsciiMsRunReader, pappso::MsFileAccessor, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderBase, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- MsFileReader() : pappso::MsFileReader
- msLevel : pappso::MassSpectrumLineData
- msms_type : pappso::TimsFrameRecord
- msp_filterChargeDeconvolution : pappso::PsmFeatures
- msp_filterExclusion : pappso::CosineSimilarity
- msp_filterKeepGreater : pappso::PsmFeatures
- msp_filterMzExclusion : pappso::PsmFeatures
- msp_fragment : pappso::PeptideFragmentIon
- msp_integrationScope : pappso::BasePlotContext
- msp_massSpectrum : pappso::QualifiedMassSpectrum
- msp_ms1Filter : pappso::TimsMsRunReaderMs2
- msp_ms2Filter : pappso::TimsMsRunReaderMs2
- msp_ms2FilterSuiteString : pappso::TandemWrapperRun
- msp_msData : pappso::PwizMsRunReader
- msp_msrun_reader : pappso::MsRunXicExtractorInterface
- msp_msrunReader : pappso::MsRunRetentionTime< T >
- msp_mzCalibration : pappso::TimsFrameBase
- msp_naturalIsotopeAverage : pappso::XicPeptideFragmentIonNaturalIsotope
- msp_peptide : pappso::PeptideFragment, pappso::PeptideFragmentIonListBase, pappso::PeptideNaturalIsotopeList, pappso::PsmFeatures, pappso::specglob::PeptideSpectrum
- msp_peptide_fragment_ion_list : pappso::PeptideFragmentIonListBase
- msp_peptide_natural_isotope_list : pappso::PeptideNaturalIsotopeList
- msp_peptideFragmentIon : pappso::XicPeptideFragmentIon, pappso::XicPeptideFragmentIonNaturalIsotope
- msp_peptideInterface : pappso::XicPeptideInterface
- msp_peptideSpectrumMatch : pappso::PsmFeatures
- msp_protein : pappso::ProteinIntegerCode
- msp_timsData : pappso::TimsMsRunReaderBase, pappso::TimsMsRunReaderMs2
- msp_xic : pappso::QualifiedXic
- MsRunDataSetTree() : pappso::MsRunDataSetTree, pappso::MsRunDataSetTreeNode
- MsRunDataSetTreeNode() : pappso::MsRunDataSetTreeNode
- MsRunId() : pappso::MsRunId
- MsRunQualifiedSpectrumLoader() : pappso::MsRunQualifiedSpectrumLoader
- MsRunReadConfig() : pappso::MsRunReadConfig
- MsRunReader() : pappso::MsRunReader
- MsRunReaderRetentionTimeLine() : pappso::MsRunReaderRetentionTimeLine
- MsRunReaderScanNumberMultiMap() : pappso::MsRunReaderScanNumberMultiMap
- msRunReaderSPtr() : pappso::MsFileAccessor
- msRunReaderSPtrForSelectedMsRunId() : pappso::MsFileAccessor
- MsRunReaderTicChromatogram() : pappso::MsRunReaderTicChromatogram
- MsRunRetentionTime() : pappso::MsRunRetentionTime< T >
- MsRunSlice() : pappso::MsRunSlice
- MsRunXicExtractor() : pappso::MsRunXicExtractor
- MsRunXicExtractorDisk() : pappso::MsRunXicExtractorDisk
- MsRunXicExtractorDiskBuffer() : pappso::MsRunXicExtractorDiskBuffer
- MsRunXicExtractorFactory : pappso::MsRunXicExtractor, pappso::MsRunXicExtractorDisk, pappso::MsRunXicExtractorDiskBuffer, pappso::MsRunXicExtractorFactory
- MsRunXicExtractorInterface() : pappso::MsRunXicExtractorInterface
- MsRunXicExtractorReadPoints() : pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints
- multiplyBy() : pappso::XicCoord, pappso::XicCoordTims
- mz : pappso::AaStringCodeMassMatching::aaCodeAndMassRange, pappso::PrecursorIonData, pappso::specglob::PeptideSpectrumDataPoint
- mz_calibration_id : pappso::TimsFrameRecord
- mz_range : pappso::MassSpectrumLineData, pappso::specglob::TheoreticalPeakDataPoint
- mz_range_low : pappso::AaStringCodeMassMatching::aaCodeAndMassRange
- mz_range_up : pappso::AaStringCodeMassMatching::aaCodeAndMassRange
- MzCalibrationInterface() : pappso::MzCalibrationInterface
- MzCalibrationModel1() : pappso::MzCalibrationModel1
- MzCalibrationModel1Cached() : pappso::MzCalibrationModel1Cached
- MzCalibrationStore() : pappso::MzCalibrationStore
- mzCellCount : pappso::ColorMapPlotConfig
- mzChanged() : pappso::MassSpectrumWidget
- mzChangeEvent() : pappso::MassSpectrumWidget
- MzIdentMlWriter() : pappso::MzIdentMlWriter
- mzIndexLowerBound : pappso::TimsFrame::XicComputeStructure
- mzIndexUpperBound : pappso::TimsFrame::XicComputeStructure
- MzIntegrationParams() : pappso::MzIntegrationParams
- mzListDataFormatRegExp : pappso::Utils
- MzRange() : pappso::MzRange
- mzRange : pappso::XicCoord
- MzxmlOutput() : pappso::MzxmlOutput