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filterobopsimodtermname.cpp
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#include "filterobopsimodtermname.h"
namespace pappso
{
FilterOboPsiModTermName::FilterOboPsiModTermName(
OboPsiModHandlerInterface &sink, const QString &name_search)
: m_sink(sink)
{
m_nameMatch.setPattern(QString(name_search).replace("*", "(.*)"));
m_nameMatch.setPatternOptions(QRegularExpression::CaseInsensitiveOption);
}
FilterOboPsiModTermName::~FilterOboPsiModTermName()
{
}
void
FilterOboPsiModTermName::setOboPsiModTerm(const OboPsiModTerm &term)
{
// qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
if(m_nameMatch.match(term.m_name).hasMatch())
{
m_sink.setOboPsiModTerm(term);
}
}
} // namespace pappso
pappso::FilterOboPsiModTermName::m_nameMatch
QRegularExpression m_nameMatch
Definition filterobopsimodtermname.h:35
pappso::FilterOboPsiModTermName::setOboPsiModTerm
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
Definition filterobopsimodtermname.cpp:42
pappso::FilterOboPsiModTermName::FilterOboPsiModTermName
FilterOboPsiModTermName(OboPsiModHandlerInterface &sink, const QString &name_search)
Definition filterobopsimodtermname.cpp:28
pappso::FilterOboPsiModTermName::~FilterOboPsiModTermName
virtual ~FilterOboPsiModTermName()
Definition filterobopsimodtermname.cpp:36
pappso::FilterOboPsiModTermName::m_sink
OboPsiModHandlerInterface & m_sink
Definition filterobopsimodtermname.h:36
pappso::OboPsiModHandlerInterface
Definition obopsimodhandlerinterface.h:31
pappso::OboPsiModHandlerInterface::setOboPsiModTerm
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
pappso::OboPsiModTerm
Definition obopsimodterm.h:32
pappso::OboPsiModTerm::m_name
QString m_name
Definition obopsimodterm.h:49
filterobopsimodtermname.h
pappso
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