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Here is a list of all class members with links to the classes they belong to:

### - r -

- raise() : pappso::PappsoException
- range() : pappso::IntegrationScope, pappso::IntegrationScopeBase, pappso::IntegrationScopeRect, pappso::IntegrationScopeRhomb, pappso::SelectionPolygon
- rangeX() : pappso::SelectionPolygon
- rangeY() : pappso::SelectionPolygon
- rawReaderSpectrumCollectionByMsLevel() : pappso::TimsDdaPrecursors
- rbegin() : pappso::Peptide
- read() : pappso::XmlStreamReaderInterface
- read_note() : pappso::XtandemPresetReader
- readFile() : pappso::XmlStreamReaderInterface
- readIntensity() : pappso::TimsDataFastMap
- readSpectrumCollection() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- readSpectrumCollection2() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- readSpectrumCollectionByMsLevel() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderDia, pappso::TimsMsRunReaderMs2, pappso::XyMsRunReader
- readSpectrumCollectionWithMsrunReadConfig() : pappso::PwizMsRunReader
- readStream() : pappso::WrapTandemInput, pappso::WrapTandemResults, pappso::XmlStreamReaderInterface, pappso::XtandemPresetReader
- readTandemPresetFile() : pappso::TandemWrapperRun
- readTimsFrame() : pappso::TimsFrameRawDataChunck
- readyReadStandardError() : pappso::TandemWrapperRun
- readyReadStandardOutput() : pappso::TandemWrapperRun
- realft() : pappso::FilterSavitzkyGolay
- recGenerateModel() : pappso::AaStringCodec
- reconstructTrace() : pappso::FilterLowIntensitySignalRemoval
- recordDragDirections() : pappso::BasePlotContext
- recursiveDepletion() : pappso::PeptideNaturalIsotopeAverage
- redrawPlotBackground() : pappso::BasePlotWidget
- refreshBaseContext() : pappso::MassSpecTracePlotWidget
- releaseDevice() : pappso::BafAsciiMsRunReader, pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsMsRunReaderBase, pappso::TimsMsRunReaderMs2, pappso::XyMsRunReader
- remove() : pappso::GrpMapPeptideToSubGroupSet, pappso::GrpSubGroupSet, pappso::specglob::AminoAcidModel
- removeAaModification() : pappso::Aa, pappso::Peptide
- removeAllButInternalModification() : pappso::Aa
- removeArtefactualSpike() : pappso::TimsDataFastMap
- removeBracketsForAlignedAA() : pappso::specglob::PeptideModel
- removeBucketsWithinCartIdRange() : pappso::spectree::BucketClustering
- removeCterAminoAcid() : pappso::Peptide
- removeDataSetQualMassSpectraOutsideDtRtRange() : pappso::MsRunDataSetTree
- removeDataSetTreeNodesOutsideDtRtRange() : pappso::MsRunDataSetTree
- removeFirstNonInformativeSubGroup() : pappso::GrpGroup
- removeInternalCterModification() : pappso::Aa, pappso::Peptide
- removeInternalNterModification() : pappso::Aa, pappso::Peptide
- removeNonInformativeSubGroups() : pappso::GrpExperiment, pappso::GrpGroup
- removeNterAminoAcid() : pappso::Peptide
- removeTraceInExclusionMargin() : pappso::FilterMzExclusion
- removeTranslationStop() : pappso::Protein
- removeZeroYDataPoints() : pappso::Trace
- removingNonInformativeSubGroupsInGroup() : pappso::GrpGroupingMonitor, pappso::GrpGroupingMonitorInterface
- rend() : pappso::Peptide
- replaceAaModification() : pappso::Aa, pappso::Peptide
- replaceLeucineIsoleucine() : pappso::AaBase, pappso::Peptide
- replaceModificationsAtPosition() : pappso::PeptideVariableModificationReplacement
- replaceWildcards() : pappso::Enzyme
- replotAll() : pappso::XicWidget
- replotWithAxesRanges() : pappso::BasePlotWidget
- replotWithAxisRangeX() : pappso::BasePlotWidget
- replotWithAxisRangeY() : pappso::BasePlotWidget
- reportSimilarity() : pappso::spectree::SpecXtractInterface, pappso::spectree::SpecXtractMap
- rescale() : pappso::MassSpectrumWidget, pappso::QCPSpectrum, pappso::QCPXic, pappso::XicWidget
- rescaleOneRange() : pappso::XicWidget
- reset() : pappso::DataPoint, pappso::IntegrationScope, pappso::IntegrationScopeBase, pappso::IntegrationScopeRect, pappso::IntegrationScopeRhomb, pappso::MsRunReadConfig, pappso::MzIntegrationParams, pappso::XicCoord, pappso::XicCoordTims, pappso::XtandemHyperscoreBis
- resetAxesRangeHistory() : pappso::BasePlotWidget
- resetPoints() : pappso::SelectionPolygon
- resetSelectionRectangle() : pappso::BasePlotWidget
- resolvingPowerComputationSignal() : pappso::MassSpecTracePlotWidget
- ResPrecision() : pappso::ResPrecision
- restoreAxesRangeHistory() : pappso::BasePlotWidget
- restorePreviousAxesRangeHistory() : pappso::BasePlotWidget
- result_type : ContainsAny
- retentionTime : pappso::MassSpectrumLineData, pappso::MsRunRetentionTime< T >::PeptideMs2Point, pappso::MsRunRetentionTimeSeamarkPoint< T >
- reverse() : pappso::Peptide, pappso::Protein
- reverseFindDiffMz() : pappso::specglob::ExperimentalSpectrum
- rotate() : pappso::Peptide
- roundToDecimal32bitsAsLongLongInt() : pappso::Utils
- roundToDecimals() : pappso::Utils
- rowCount() : pappso::OboListModel
- rt : pappso::MsRunXicExtractor::MsRunXicExtractorPoints
- rtChanged() : pappso::XicWidget
- rtChangeEvent() : pappso::XicWidget
- rtrim() : pappso::specglob::SpectralAlignment
- rtTarget : pappso::XicCoord
- run() : pappso::TandemWrapperRun
- runFilter() : pappso::FilterSavitzkyGolay
- runTandem() : pappso::TandemWrapperRun