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pappso::TimsData Member List

This is the complete list of members for pappso::TimsData, including all inherited members.

fillFrameIdDescrList() | pappso::TimsData | private
fillSpectrumDescriptionWithSqlRecord(SpectrumDescr &spectrum_descr, QSqlQuery &qprecursor_list) | pappso::TimsData | private
getClosestPrecursorIdByMz(std::vector< std::vector< double > > ids, double mz_value) | pappso::TimsData | private
getFrameIdDescrList() const | pappso::TimsData |
getMassSpectrumCstSPtr(std::size_t timsId, std::size_t scanNum) | pappso::TimsData |
getMassSpectrumCstSPtrByRawIndex(std::size_t raw_index) | pappso::TimsData |
getMatchPrecursorIdByKo(std::vector< std::vector< double > > ids, double ko_value) | pappso::TimsData | private
getMs2BuiltinCentroid() const | pappso::TimsData |
getMsLevelBySpectrumIndex(std::size_t spectrum_index) | pappso::TimsData |
getPrecursorsFromMzRtCharge(int charge, double mz_val, double rt_sec, double k0) | pappso::TimsData |
getQualifiedMassSpectrumByRawIndex(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, std::size_t spectrum_index, bool want_binary_data) | pappso::TimsData |
getQualifiedMs1MassSpectrumByPrecursorId(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, const SpectrumDescr &spectrum_descr, bool want_binary_data) | pappso::TimsData |
getQualifiedMs2MassSpectrumByPrecursorId(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, const SpectrumDescr &spectrum_descr, bool want_binary_data) | pappso::TimsData |
getRawIndexFromCoordinate(std::size_t frame_id, std::size_t scan_num) const | pappso::TimsData | private
getRawMs2ByPrecursorId(std::size_t precursor_index) | pappso::TimsData |
getRawMsBySpectrumIndex(std::size_t spectrum_index) | pappso::TimsData |
getRetentionTimeLine() const | pappso::TimsData | virtual
getScanCoordinateFromRawIndex(std::size_t spectrum_index) const | pappso::TimsData | private
getSpectrumDescrWithPrecursorId(std::size_t precursor_id) | pappso::TimsData |
getSpectrumDescrWithScanCoordinate(const std::pair< std::size_t, std::size_t > &scan_coordinate) | pappso::TimsData | private
getTicChromatogram() const | pappso::TimsData |
getTimsFrameBaseCstSPtr(std::size_t timsId) | pappso::TimsData | private
getTimsFrameBaseCstSPtrCached(std::size_t timsId) | pappso::TimsData | private
getTimsFrameCstSPtr(std::size_t timsId) | pappso::TimsData |
getTimsFrameCstSPtrCached(std::size_t timsId) | pappso::TimsData |
getTimsFrameRecordList() const | pappso::TimsData |
getTimsMS1FrameIdRange(double rt_begin, double rt_end) const | pappso::TimsData |
getTotalNumberOfFrames() const | pappso::TimsData |
getTotalNumberOfPrecursors() const | pappso::TimsData |
getTotalNumberOfScans() const | pappso::TimsData |
getXicCoordTimsFromPrecursorId(std::size_t precursor_id, PrecisionPtr precision_ptr) | pappso::TimsData |
m_builtinMs2Centroid | pappso::TimsData | private
m_cacheSize | pappso::TimsData | private
m_frameIdDescrList | pappso::TimsData | private
m_hasPrecursorTable | pappso::TimsData | private
m_isMonoThread | pappso::TimsData | private
m_mapFramesRecord | pappso::TimsData | private
m_mapMzCalibrationRecord | pappso::TimsData | private
m_mapTimsCalibrationRecord | pappso::TimsData | private
m_mapXicCoordRecord | pappso::TimsData | private
m_mutex | pappso::TimsData | private
m_someoneIsLoadingFrameId | pappso::TimsData | private
m_thousandIndexToFrameIdDescrListIndex | pappso::TimsData | private
m_timsDataDirectory | pappso::TimsData | private
m_timsFrameBaseCache | pappso::TimsData | private
m_timsFrameCache | pappso::TimsData | private
m_totalNumberOfFrames | pappso::TimsData | private
m_totalNumberOfPrecursors | pappso::TimsData | private
m_totalNumberOfScans | pappso::TimsData | private
mcsp_ms1Filter | pappso::TimsData | private
mcsp_ms2Filter | pappso::TimsData | private
mpa_mzCalibrationStore | pappso::TimsData | private
mpa_timsBinDec | pappso::TimsData | private
ms2ReaderGenerateMS1MS2Spectrum(const MsRunIdCstSPtr &msrun_id, std::vector< QualifiedMassSpectrum > &qualified_mass_spectrum_list, SpectrumCollectionHandlerInterface &handler, const SpectrumDescr &spectrum_descr, unsigned int ms_level) | pappso::TimsData | private
ms2ReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) | pappso::TimsData |
openDatabaseConnection() const | pappso::TimsData | private
rawReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) | pappso::TimsData |
setMonoThread(bool is_mono_thread) | pappso::TimsData |
setMs1FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter) | pappso::TimsData |
setMs2BuiltinCentroid(bool centroid) | pappso::TimsData |
setMs2FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter) | pappso::TimsData |
TimsData(QDir timsDataDirectory) | pappso::TimsData |
TimsData(const TimsData &other) | pappso::TimsData |
~TimsData() | pappso::TimsData | virtual