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peptideproformaparser.h
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/**
* \file pappsomspp/peptide/peptideproformaparser.h
* \date 27/11/2023
* \author Olivier Langella
* \brief parse peptide string in ProForma to pappso::Peptide
* https://github.com/HUPO-PSI/ProForma/blob/master/README.md
*/
/*******************************************************************************
* Copyright (c) 2023 Olivier Langella
*<Olivier.Langella@universite-paris-saclay.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "peptide.h"
namespace pappso
{
/**
* @todo write docs
*/
class PMSPP_LIB_DECL PeptideProFormaParser
{
public:
static PeptideSp parseString(const QString &pepstr);
static NoConstPeptideSp parseNoConstString(const QString &pepstr);
private:
static void parseStringToPeptide(const QString &pepstr, Peptide &peptide);
private:
//static QRegularExpression _mod_parser;
static QRegularExpression _rx_psimod;
static QRegularExpression _rx_modmass;
};
} // namespace pappso
pappso::PeptideProFormaParser
Definition peptideproformaparser.h:39
pappso::PeptideProFormaParser::_rx_psimod
static QRegularExpression _rx_psimod
Definition peptideproformaparser.h:51
pappso::PeptideProFormaParser::_rx_modmass
static QRegularExpression _rx_modmass
Definition peptideproformaparser.h:52
pappso::Peptide
Definition peptide.h:100
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition aamodification.h:48
pappso::NoConstPeptideSp
std::shared_ptr< Peptide > NoConstPeptideSp
Definition peptide.h:97
peptide.h
peptide model