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peptidesemienzyme.h
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/*******************************************************************************
* Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include "enzymeproductinterface.h"
namespace pappso
{
/** \brief cut a regular peptide obtained with an enzyme at any position from
* Nter or Cter
*
* WORK IN PROGRESS
* */
class PMSPP_LIB_DECL PeptideSemiEnzyme : public EnzymeProductInterface,
PeptideSinkInterface
{
public:
PeptideSemiEnzyme();
virtual ~PeptideSemiEnzyme();
// EnzymeProductInterface
void setPeptide(std::int8_t sequence_database_id,
const ProteinSp &protein_sp,
bool is_decoy,
const QString &peptide,
unsigned int start,
bool is_nter,
unsigned int missed_cleavage_number,
bool semi_enzyme) override;
// PeptideSinkInterface
void
setSink(EnzymeProductInterface *sink) override
{
m_sink = sink;
};
private:
EnzymeProductInterface *m_sink = nullptr;
};
} // namespace pappso
pappso::EnzymeProductInterface
Definition enzymeproductinterface.h:34
pappso::PeptideSemiEnzyme
cut a regular peptide obtained with an enzyme at any position from Nter or Cter
Definition peptidesemienzyme.h:41
pappso::PeptideSemiEnzyme::setSink
void setSink(EnzymeProductInterface *sink) override
Definition peptidesemienzyme.h:58
pappso::PeptideSinkInterface
Definition enzymeproductinterface.h:101
enzymeproductinterface.h
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
pappso::ProteinSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition protein.h:47