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grpgroup.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include <list>
#include "grpsubgroup.h"
#include "grpmappeptidetosubgroupset.h"
namespace pappso
{
class GrpExperiment;
class GrpGroup;
typedef std::shared_ptr<GrpGroup> GrpGroupSp;
typedef std::shared_ptr<const GrpGroup> GrpGroupSpConst;
class PMSPP_LIB_DECL GrpGroup
{
friend class GrpExperiment;
private:
std::list<GrpSubGroupSp> m_subGroupList;
unsigned int m_groupNumber = 0;
GrpPeptideSet m_peptideSet;
GrpMapPeptideToSubGroupSet m_mapPeptideToSubGroupSet;
protected:
const std::list<GrpSubGroupSp> &getSubGroupSpList() const;
GrpGroup(GrpSubGroupSp &grpSubGroupSp);
GrpGroupSp makeGrpGroupSp();
bool removeFirstNonInformativeSubGroup();
void check() const;
public:
GrpGroup(const GrpGroup &grpGroupSp);
~GrpGroup();
bool operator<(const GrpGroup &other) const;
bool containsAny(const GrpPeptideSet &peptideSet) const;
void addSubGroupSp(const GrpSubGroupSp &grpSubGroupSp);
void addGroup(GrpGroup *p_group_to_add);
void numbering();
void setGroupNumber(unsigned int i);
bool removeNonInformativeSubGroups();
const QString getGroupingId() const;
unsigned int getGroupNumber() const;
const GrpPeptideSet &getGrpPeptideSet() const;
std::vector<GrpSubGroupSpConst> getGrpSubGroupSpList() const;
};
} // namespace pappso
pappso::GrpExperiment
Definition grpexperiment.h:42
pappso::GrpGroup
Definition grpgroup.h:44
pappso::GrpGroup::m_subGroupList
std::list< GrpSubGroupSp > m_subGroupList
Definition grpgroup.h:48
pappso::GrpGroup::m_mapPeptideToSubGroupSet
GrpMapPeptideToSubGroupSet m_mapPeptideToSubGroupSet
Definition grpgroup.h:52
pappso::GrpGroup::m_peptideSet
GrpPeptideSet m_peptideSet
Definition grpgroup.h:50
pappso::GrpMapPeptideToSubGroupSet
Definition grpmappeptidetosubgroupset.h:37
pappso::GrpPeptideSet
Definition grppeptideset.h:36
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition exportinmportconfig.h:14
grpmappeptidetosubgroupset.h
grpsubgroup.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
pappso::operator<
bool operator<(Aa const &l, Aa const &r)
Definition aa.cpp:347
pappso::GrpSubGroupSp
std::shared_ptr< GrpSubGroup > GrpSubGroupSp
Definition grpsubgroup.h:39
pappso::GrpGroupSpConst
std::shared_ptr< const GrpGroup > GrpGroupSpConst
Definition grpgroup.h:40
pappso::GrpGroupSp
std::shared_ptr< GrpGroup > GrpGroupSp
Definition grpgroup.h:39