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Here is a list of all class members with links to the classes they belong to:

### - c -

- calculateDragDeltas() : pappso::BasePlotWidget
- calculateMassFromChemicalComponents() : pappso::AaModification
- charge : pappso::PrecursorIonData
- check() : pappso::GrpGroup, pappso::GrpMapPeptideToSubGroupSet
- checkForAaModification() : pappso::specglob::PeptideModel
- checkForAaModificationP() : pappso::specglob::PeptideModel
- checkForMutation() : pappso::specglob::PeptideModel
- checkForMutations() : pappso::specglob::PeptideModel
- checkScanNum() : pappso::TimsFrameBase
- checkXtandemVersion() : pappso::TandemWrapperRun
- chronoIntervalDebugString() : pappso::Utils
- chronoTimePointDebugString() : pappso::Utils
- clear() : pappso::GrpMapPeptideToGroup, pappso::MsRunReaderQualifiedSpectrumList, pappso::MsRunSlice, pappso::QCPXic, pappso::XicWidget
- clearData() : pappso::MassSpectrumWidget, pappso::QCPSpectrum
- clearGraphData() : pappso::BaseTracePlotWidget
- clearTerm() : pappso::OboPsiModTerm
- clearXicPeakBorders() : pappso::QCPXic, pappso::XicWidget
- clicked() : pappso::XicWidget
- clone() : pappso::ExceptionInterrupted, pappso::ExceptionNotFound, pappso::ExceptionNotImplemented, pappso::ExceptionNotPossible, pappso::ExceptionNotRecognized, pappso::ExceptionOutOfRange, pappso::PappsoException, pappso::XtandemError
- cloneElement() : pappso::XmlStreamReaderInterface
- cloneMassSpectrumSPtr() : pappso::QualifiedMassSpectrum
- cloneNode() : pappso::XmlStreamReaderInterface
- cloneStartElement() : pappso::XmlStreamReaderInterface
- close() : pappso::FastaFileIndexer, pappso::FastaFileIndexerInterface, pappso::MgfOutput, pappso::MzxmlOutput
- closeLinearRead() : pappso::TimsBinDec
- ClusterApices : pappso::FilterLowIntensitySignalRemoval
- code() : pappso::AaStringCodec, pappso::AaStringCodeMassMatching::aaCodeAndMassRange, pappso::CodeToMass
- codeLlc() : pappso::AaStringCodec
- codeOnlyContains() : pappso::AaStringCodec
- collisionEnergy : pappso::TimsData::SpectrumDescr
- ColorMapPlotConfig() : pappso::ColorMapPlotConfig
- combine() : pappso::MassDataCombinerInterface, pappso::MassSpectrumMinusCombiner, pappso::MassSpectrumPlusCombiner, pappso::TraceMinusCombiner, pappso::TracePlusCombiner
- computeBestChargeOfDataPoint() : pappso::FilterChargeDeconvolution
- computeCorrections() : pappso::IonMobilityGrid
- computeIsotopeDeconvolution() : pappso::FilterChargeDeconvolution
- computeIsotopeMassList() : pappso::MassSpectrumWidget
- computeMinMaxCoordinates() : pappso::SelectionPolygon
- computePeptideCodeFragments() : pappso::ProteinIntegerCode
- computeResolvingPower() : pappso::MassSpecTracePlotWidget
- ComputeRetentionTimeReference : pappso::MsRunRetentionTime< T >
- computeSeamarks() : pappso::MsRunRetentionTime< T >
- computeTicChromatogram() : pappso::TimsFramesMsRunReader
- computeXtandemHyperscore() : pappso::XtandemHyperscoreBis
- const_iterator : pappso::GrpProtein, pappso::PeptideIsotopeSpectrumMatch, pappso::PeptideNaturalIsotopeList, pappso::PeptideSpectrumMatch
- contains() : pappso::GrpPeptideSet, pappso::GrpSubGroupSet, pappso::MzRange, pappso::PeptideSpectrumMatch, pappso::SelectionPolygon
- containsAll() : pappso::GrpPeptideSet
- ContainsAny() : ContainsAny
- containsAny() : pappso::GrpGroup, pappso::GrpPeptideSet
- containsRt() : pappso::TracePeak
- containsX() : pappso::Trace
- convertOrginalMsData2mzXmlData() : pappso::TandemWrapperRun
- convertTo1D() : pappso::SelectionPolygon
- convlv() : pappso::FilterSavitzkyGolay
- convolveWithNr : pappso::SavGolParams
- copyAndLzfDecompress() : pappso::TimsFrameType1
- copyDeep() : pappso::specglob::PeptideModel
- copyPoint() : pappso::SelectionPolygon
- correctNewTimeValues() : pappso::MsRunRetentionTime< T >
- CosineSimilarity() : pappso::CosineSimilarity
- count() : pappso::UiMonitorInterface, pappso::UiMonitorText, pappso::UiMonitorTextPercent, pappso::UiMonitorVoid
- countMatchedIonComplementPairs() : pappso::PsmFeatures
- countModificationOnAa() : pappso::Peptide
- countPlus() : pappso::GrpProtein
- countTotalMatchedIons() : pappso::PeptideSpectrumMatch
- createAllAncillaryItems() : pappso::BasePlotWidget
- createArbitraryBins() : pappso::MzIntegrationParams
- createBins() : pappso::MzIntegrationParams
- createDataBasedBins() : pappso::MzIntegrationParams
- createInstance() : pappso::AaModification
- createInstanceC13N15LabelledAminoAcid() : pappso::AaModification
- createInstanceMutation() : pappso::AaModification
- createSymetricPeakList() : pappso::specglob::ExperimentalSpectrum
- cumulateScan() : pappso::TimsFrame, pappso::TimsFrameType1
- cumulateScan2() : pappso::TimsFrame
- cumulateScansInRawMap() : pappso::TimsFrame, pappso::TimsFrameBase
- cumulateScansIntensities() : pappso::TimsFrame, pappso::TimsFrameBase
- cumulateScansToTrace() : pappso::TimsFrame, pappso::TimsFrameBase
- cumulateScansToTraceMzDownResolution() : pappso::TimsFrame, pappso::TimsFrameBase
- cumulateScansToTraceMzDownResolution2() : pappso::TimsFrame
- cumulateSingleScanIntensities() : pappso::TimsFrame, pappso::TimsFrameBase
- currentXaxisRangeIndices() : pappso::BaseColorMapPlotWidget
- currentYaxisRangeIndices() : pappso::BaseColorMapPlotWidget