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Here is a list of all functions with links to the classes they belong to:

### - m -

- makeDataPointCstSPtr() : pappso::DataPoint
- makeFastaFileIndexerSPtr() : pappso::FastaFileIndexer
- makeGrpGroupSp() : pappso::GrpGroup
- makeGrpSubGroupSp() : pappso::GrpSubGroup
- makeMapTraceCstSPtr() : pappso::MapTrace
- makeMapTraceSPtr() : pappso::MapTrace
- makeMassSpectrumCstSPtr() : pappso::MassSpectrum
- makeMassSpectrumSPtr() : pappso::MassSpectrum
- makeMsRunSliceSp() : pappso::MsRunSlice
- makeNoConstPeptideSp() : pappso::Peptide
- makePeptideFragmentIonListBaseSp() : pappso::PeptideFragmentIonListBase
- makePeptideFragmentIonSp() : pappso::PeptideFragmentIon
- makePeptideNaturalIsotopeAverageSp() : pappso::PeptideNaturalIsotopeAverage
- makePeptideNaturalIsotopeListSp() : pappso::PeptideNaturalIsotopeList
- makePeptideSp() : pappso::Peptide
- makeProteinSp() : pappso::Protein
- makeQualifiedMassSpectrumCstSPtr() : pappso::QualifiedMassSpectrum
- makeQualifiedMassSpectrumSPtr() : pappso::QualifiedMassSpectrum
- makeTraceCstSPtr() : pappso::Trace
- makeTracePeakCstSPtr() : pappso::TracePeak
- makeTraceSPtr() : pappso::Trace
- makeXicCstSPtr() : pappso::Xic
- makeXicSPtr() : pappso::Xic
- MapTrace() : pappso::MapTrace
- maskMs1() : pappso::MzxmlOutput
- MassDataCombinerInterface() : pappso::MassDataCombinerInterface
- massDeconvolutionSignal() : pappso::MassSpecTracePlotWidget
- MassSpecTracePlotContext() : pappso::MassSpecTracePlotContext
- MassSpecTracePlotWidget() : pappso::MassSpecTracePlotWidget
- MassSpectrum() : pappso::MassSpectrum
- MassSpectrumCombiner() : pappso::MassSpectrumCombiner
- massSpectrumCstSPtr() : pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- massSpectrumFilter() : pappso::MassSpectrum
- MassSpectrumFilterGreatestItensities() : pappso::MassSpectrumFilterGreatestItensities
- MassSpectrumFilterResampleKeepMzRange() : pappso::MassSpectrumFilterResampleKeepMzRange
- MassSpectrumFilterResampleRemoveMzRange() : pappso::MassSpectrumFilterResampleRemoveMzRange
- MassSpectrumId() : pappso::MassSpectrumId
- massSpectrumIndex() : pappso::MsRunDataSetTree
- MassSpectrumMinusCombiner() : pappso::MassSpectrumMinusCombiner
- MassSpectrumPlusCombiner() : pappso::MassSpectrumPlusCombiner
- massSpectrumSPtr() : pappso::MsRunReader, pappso::PwizMsRunReader, pappso::TimsFramesMsRunReader, pappso::TimsMsRunReader, pappso::TimsMsRunReaderMs2, pappso::TimsMsRunReaderMs2Selected, pappso::XyMsRunReader
- MassSpectrumWidget() : pappso::MassSpectrumWidget
- match() : pappso::ProteinIntegerCode
- matchExperimentalPeaks() : pappso::specglob::PeptideModel
- matchPeak() : pappso::PeptideInterface, pappso::PeptideNaturalIsotopeAverage
- maxCount() : pappso::GrpSubGroup
- maxIntensityDataPoint() : pappso::MassSpectrum
- maxX() : pappso::Trace
- maxXDataPoint() : pappso::Trace
- maxY() : pappso::Trace
- maxYDataPoint() : pappso::Trace
- merge() : pappso::GrpSubGroup
- MgfOutput() : pappso::MgfOutput
- minIntensityDataPoint() : pappso::MassSpectrum
- minX() : pappso::Trace
- minXDataPoint() : pappso::Trace
- minY() : pappso::Trace
- minYDataPoint() : pappso::Trace
- modifCount() : pappso::specglob::PeptideModel
- MorpheusScore() : pappso::MorpheusScore
- mouseMoveEvent() : pappso::QCPSpectrum, pappso::QCPXic
- mouseMoveHandler() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerDraggingCursor() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerLeftButtonDraggingCursor() : pappso::BasePlotWidget
- mouseMoveHandlerNotDraggingCursor() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseMoveHandlerRightButtonDraggingCursor() : pappso::BasePlotWidget
- mousePressEvent() : pappso::HttpButton, pappso::QCPSpectrum, pappso::QCPXic
- mousePressHandler() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mousePseudoButtonKeyPressEvent() : pappso::BasePlotWidget
- mousePseudoButtonKeyReleaseEvent() : pappso::BasePlotWidget
- mouseReleaseEvent() : pappso::QCPSpectrum, pappso::QCPXic
- mouseReleaseEventSignal() : pappso::BasePlotWidget, pappso::MassSpecTracePlotWidget
- mouseReleaseHandler() : pappso::BasePlotWidget, pappso::DriftSpecMassSpecColorMapPlotWidget, pappso::DriftSpecTracePlotWidget, pappso::MassSpecTracePlotWidget, pappso::TicXicChromDriftSpecColorMapPlotWidget, pappso::TicXicChromMassSpecColorMapPlotWidget, pappso::TicXicChromTracePlotWidget
- mouseReleaseHandlerLeftButton() : pappso::BasePlotWidget
- mouseReleaseHandlerRightButton() : pappso::BasePlotWidget
- mouseWheelEventSignal() : pappso::BasePlotWidget
- mouseWheelHandler() : pappso::BasePlotWidget
- moveLinearReadForward() : pappso::TimsBinDec
- moveMouseCursorGraphCoordToGlobal() : pappso::BasePlotWidget
- moveMouseCursorPixelCoordToGlobal() : pappso::BasePlotWidget
- ms2ReaderGenerateMS1MS2Spectrum() : pappso::TimsData
- ms2ReaderSpectrumCollectionByMsLevel() : pappso::TimsData
- MsFileAccessor() : pappso::MsFileAccessor
- MsFileReader() : pappso::MsFileReader
- MsRunDataSetTree() : pappso::MsRunDataSetTree
- MsRunDataSetTreeNode() : pappso::MsRunDataSetTreeNode
- MsRunId() : pappso::MsRunId
- MsRunReadConfig() : pappso::MsRunReadConfig
- MsRunReader() : pappso::MsRunReader
- MsRunReaderQualifiedSpectrumList() : pappso::MsRunReaderQualifiedSpectrumList
- MsRunReaderRetentionTimeLine() : pappso::MsRunReaderRetentionTimeLine
- MsRunReaderScanNumberMultiMap() : pappso::MsRunReaderScanNumberMultiMap
- msRunReaderSPtr() : pappso::MsFileAccessor
- msRunReaderSPtrForSelectedMsRunIdIndex() : pappso::MsFileAccessor
- MsRunReaderTicChromatogram() : pappso::MsRunReaderTicChromatogram
- MsRunRetentionTime() : pappso::MsRunRetentionTime< T >
- MsRunSlice() : pappso::MsRunSlice
- MsRunXicExtractor() : pappso::MsRunXicExtractor
- MsRunXicExtractorDisk() : pappso::MsRunXicExtractorDisk
- MsRunXicExtractorDiskBuffer() : pappso::MsRunXicExtractorDiskBuffer
- MsRunXicExtractorFactory() : pappso::MsRunXicExtractorFactory
- MsRunXicExtractorInterface() : pappso::MsRunXicExtractorInterface
- MsRunXicExtractorReadPoints() : pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints
- multiplyBy() : pappso::XicCoord, pappso::XicCoordTims
- MzCalibrationInterface() : pappso::MzCalibrationInterface
- MzCalibrationModel1() : pappso::MzCalibrationModel1
- MzCalibrationModel1Cached() : pappso::MzCalibrationModel1Cached
- MzCalibrationStore() : pappso::MzCalibrationStore
- mzChanged() : pappso::MassSpectrumWidget
- mzChangeEvent() : pappso::MassSpectrumWidget
- mzFormatAsString() : pappso::Utils
- MzIntegrationParams() : pappso::MzIntegrationParams
- MzRange() : pappso::MzRange
- MzxmlOutput() : pappso::MzxmlOutput