timsdirectxicextractor.h
Go to the documentation of this file.
/**
* \file pappsomspp/vendors/tims/xicextractor/timsdirectxicextractor.h
* \date 21/09/2019
* \author Olivier Langella
* \brief minimum functions to extract XICs from Tims Data
*/
/*******************************************************************************
* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "timsxicextractorinterface.h"
namespace pappso
{
/**
* @todo write docs
*/
class TimsDirectXicExtractor : public TimsXicExtractorInterface
{
public:
/**
* Default constructor
*/
TimsDirectXicExtractor(MsRunReaderSPtr &msrun_reader);
/**
* Destructor
*/
virtual ~TimsDirectXicExtractor();
protected:
void protectedExtractXicCoordSPtrList(
UiMonitorInterface &monitor,
std::vector<XicCoordSPtr>::iterator it_xic_coord_list_begin,
std::vector<XicCoordSPtr>::iterator it_xic_coord_list_end) override;
};
} // namespace pappso
pappso::TimsDirectXicExtractor
Definition: timsdirectxicextractor.h:38
pappso::TimsDirectXicExtractor::TimsDirectXicExtractor
TimsDirectXicExtractor(MsRunReaderSPtr &msrun_reader)
Definition: timsdirectxicextractor.cpp:35
pappso::TimsDirectXicExtractor::~TimsDirectXicExtractor
virtual ~TimsDirectXicExtractor()
Definition: timsdirectxicextractor.cpp:40
pappso::TimsDirectXicExtractor::protectedExtractXicCoordSPtrList
void protectedExtractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end) override
Definition: timsdirectxicextractor.cpp:46
pappso::TimsXicExtractorInterface
Definition: timsxicextractorinterface.h:43
pappso::UiMonitorInterface
Definition: uimonitorinterface.h:50
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::MsRunReaderSPtr
std::shared_ptr< MsRunReader > MsRunReaderSPtr
Definition: msrunreader.h:184
timsxicextractorinterface.h
minimum functions to extract XICs from Tims Data