xicpeptidefragmention.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include "xicpeptideinterface.h"
namespace pappso
{
class XicPeptideFragmentIon : public XicPeptideInterface
{
private:
const PeptideFragmentIonSp msp_peptideFragmentIon;
public:
XicPeptideFragmentIon(const MsRunId &msrun_id,
const PeptideFragmentIonSp &peptideFragmentIonSp,
unsigned int z,
PrecisionPtr precision);
XicPeptideFragmentIon(const XicPeptideFragmentIon &other);
~XicPeptideFragmentIon();
const PeptideFragmentIonSp &
getPeptideFragmentIonSp() const
{
return msp_peptideFragmentIon;
};
};
} // namespace pappso
pappso::MsRunId
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition: msrunid.h:53
pappso::PrecisionBase
Definition: precision.h:44
pappso::XicPeptideFragmentIon
Definition: xicpeptidefragmention.h:33
pappso::XicPeptideFragmentIon::msp_peptideFragmentIon
const PeptideFragmentIonSp msp_peptideFragmentIon
Definition: xicpeptidefragmention.h:35
pappso::XicPeptideFragmentIon::getPeptideFragmentIonSp
const PeptideFragmentIonSp & getPeptideFragmentIonSp() const
Definition: xicpeptidefragmention.h:46
pappso::XicPeptideFragmentIon::~XicPeptideFragmentIon
~XicPeptideFragmentIon()
Definition: xicpeptidefragmention.cpp:39
pappso::XicPeptideFragmentIon::XicPeptideFragmentIon
XicPeptideFragmentIon(const MsRunId &msrun_id, const PeptideFragmentIonSp &peptideFragmentIonSp, unsigned int z, PrecisionPtr precision)
Definition: xicpeptidefragmention.cpp:29
pappso::XicPeptideInterface
Definition: xicpeptideinterface.h:35
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::PeptideFragmentIonSp
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
Definition: peptidefragmention.h:44
xicpeptideinterface.h