peptidemodificatortee.cpp
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/*******************************************************************************
* Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#include "peptidemodificatortee.h"
using namespace pappso;
PeptideModificatorTee::PeptideModificatorTee()
{
}
PeptideModificatorTee::PeptideModificatorTee(const PeptideModificatorTee &other)
{
throw PappsoException(
QObject::tr("unable to copy PeptideModificatorTee object"));
m_peptideModPtrList = other.m_peptideModPtrList;
}
PeptideModificatorTee::~PeptideModificatorTee()
{
}
void
PeptideModificatorTee::addModificator(
PeptideModificatorInterface *p_peptide_mod)
{
m_peptideModPtrList.push_back(p_peptide_mod);
}
void
PeptideModificatorTee::setPeptideSp(std::int8_t sequence_database_id,
const ProteinSp &protein_sp,
bool is_decoy,
const PeptideSp &peptide_sp_original,
unsigned int start,
bool is_nter,
unsigned int missed_cleavage_number,
bool semi_enzyme)
{
qDebug() << "PeptideModificatorTee::setPeptide begin";
for(auto p_peptide_mod : m_peptideModPtrList)
{
p_peptide_mod->setPeptideSp(sequence_database_id,
protein_sp,
is_decoy,
peptide_sp_original,
start,
is_nter,
missed_cleavage_number,
semi_enzyme);
}
qDebug() << "PeptideModificatorTee::setPeptide end";
}
pappso::PappsoException
Definition: pappsoexception.h:42
pappso::PeptideModificatorInterface
Definition: enzymeproductinterface.h:65
pappso::PeptideModificatorTee
Definition: peptidemodificatortee.h:35
pappso::PeptideModificatorTee::PeptideModificatorTee
PeptideModificatorTee()
Definition: peptidemodificatortee.cpp:28
pappso::PeptideModificatorTee::addModificator
void addModificator(PeptideModificatorInterface *p_peptide_mod)
Definition: peptidemodificatortee.cpp:43
pappso::PeptideModificatorTee::~PeptideModificatorTee
virtual ~PeptideModificatorTee()
Definition: peptidemodificatortee.cpp:38
pappso::PeptideModificatorTee::setPeptideSp
void setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override
function to give the products of modifications for a digested peptide
Definition: peptidemodificatortee.cpp:51
pappso::PeptideModificatorTee::m_peptideModPtrList
std::list< PeptideModificatorInterface * > m_peptideModPtrList
Definition: peptidemodificatortee.h:54
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition: aamodification.h:47
pappso::ProteinSp
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition: protein.h:43
peptidemodificatortee.h