Here is a list of all class members with links to the classes they belong to:

### - s -

- sanityCheck() : pappso::Enzyme
- savePdf() : pappso::MassSpectrumWidget
- SavGolParams() : pappso::SavGolParams
- scan_mobility_end : pappso::TimsData::SpectrumDescr
- scan_mobility_start : pappso::TimsData::SpectrumDescr
- scanNumBegin : pappso::XicCoordTims
- scanNumber2SpectrumIndex() : pappso::MsRunReader
- scanNumEnd : pappso::XicCoordTims
- SelectionPolygon() : pappso::SelectionPolygon
- selectionPolygon : pappso::SelectionPolygonSpec
- SelectionPolygonSpec() : pappso::SelectionPolygonSpec
- selectMsRunReader() : pappso::TimsMsFileReader , pappso::XyMsFileReader
- serializeMsRun() : pappso::MsRunXicExtractorDisk
- set() : pappso::GrpMapPeptideToGroup
- set1D() : pappso::SelectionPolygon
- set2D() : pappso::SelectionPolygon
- setAccession() : pappso::Protein
- setAccumulationTime() : pappso::TimsFrameBase
- setAlignedRetentionTimeVector() : pappso::MsRunRetentionTime< T >
- setApplyMzShift() : pappso::MzIntegrationParams
- setArea() : pappso::TracePeak
- setAxisLabelX() : pappso::BasePlotWidget
- setAxisLabelY() : pappso::BasePlotWidget
- setBinningType() : pappso::MzIntegrationParams
- setBins() : pappso::MassSpectrumCombiner
- setChargeMinimalFractionalPart() : pappso::MassSpecTracePlotWidget
- setChargeStateEnvelopePeakSpan() : pappso::MassSpecTracePlotWidget
- setColorMapPlotConfig() : pappso::BaseColorMapPlotWidget
- setCurrentIndex() : pappso::PrecisionWidget
- setDaltonValueChanged() : pappso::PrecisionWidget
- setDecimalPlaces() : pappso::MassDataCombinerInterface , pappso::MzIntegrationParams
- setDescription() : pappso::Protein
- setDetectionThresholdOnMaxmin() : pappso::TraceDetectionZivy
- setDetectionThresholdOnMinmax() : pappso::TraceDetectionZivy
- setDiffFormula() : pappso::AaModification
- setDtInMilliSeconds() : pappso::QualifiedMassSpectrum
- setDynamicRange() : pappso::XtandemSpectrumProcess
- setEmptyMassSpectrum() : pappso::QualifiedMassSpectrum
- setExcludeParent() : pappso::XtandemSpectrumProcess
- setExcludeParentNeutralLoss() : pappso::XtandemSpectrumProcess
- setFileName() : pappso::MsRunId
- setFilterMorphoMaxMin() : pappso::TraceDetectionZivy
- setFilterMorphoMean() : pappso::TraceDetectionMoulon , pappso::TraceDetectionZivy
- setFilterMorphoMinMax() : pappso::TraceDetectionZivy
- setFocus() : pappso::BasePlotWidget
- setFocusSignal() : pappso::BasePlotWidget
- setGraphData() : pappso::BaseTracePlotWidget
- setGreatestMz() : pappso::MzIntegrationParams
- setGroupNumber() : pappso::GrpGroup , pappso::GrpPeptide , pappso::GrpPeptideSet , pappso::GrpProtein , pappso::GrpSubGroup
- setGrpPeptide() : pappso::GrpExperiment
- setInputParameters() : pappso::WrapTandemResults
- setInternalCterModification() : pappso::Peptide
- setInternalNterModification() : pappso::Peptide
- setIonList() : pappso::MassSpectrumWidget
- setIonScore() : pappso::XtandemSpectrumProcess
- setLeftBoundary() : pappso::TracePeak
- setMassSpectrumCstSPtr() : pappso::MassSpectrumWidget
- setMassSpectrumId() : pappso::QualifiedMassSpectrum
- setMassSpectrumSPtr() : pappso::QualifiedMassSpectrum
- setMaximumIsotopeNumber() : pappso::MassSpectrumWidget
- setMaximumIsotopeRank() : pappso::MassSpectrumWidget
- setMaxNumberMod() : pappso::PeptideVariableModificationBuilder
- setMaxPeptideVariantListSize() : pappso::Enzyme
- setMaxXicElement() : pappso::TracePeak
- setMinimumMz() : pappso::XtandemSpectrumProcess
- setMinNumberMod() : pappso::PeptideVariableModificationBuilder
- setMiscleavage() : pappso::Enzyme
- setModificationCounter() : pappso::PeptideVariableModificationBuilder
- setModificationPattern() : pappso::PeptideModificatorBase
- setMs1FilterCstSPtr() : pappso::TimsData , pappso::TimsMsRunReaderMs2 , pappso::TimsMsRunReaderMs2Selected
- setMs1MeanFilter() : pappso::MsRunRetentionTime< T >
- setMs1Precision() : pappso::MassSpectrumWidget
- setMs2BuiltinCentroid() : pappso::TimsData , pappso::TimsMsRunReaderMs2
- setMs2FilterCstSPtr() : pappso::TimsData , pappso::TimsMsRunReaderMs2 , pappso::TimsMsRunReaderMs2Selected
- setMs2MeanFilter() : pappso::MsRunRetentionTime< T >
- setMs2MedianFilter() : pappso::MsRunRetentionTime< T >
- setMs2Precision() : pappso::MassSpectrumWidget
- setMsLevel() : pappso::MassSpectrumWidget , pappso::QualifiedMassSpectrum
- setMsMsType() : pappso::TimsFrameBase
- setMsRunId() : pappso::MassSpectrumId
- setMsRunXicExtractorFactoryType() : pappso::MsRunXicExtractorFactory
- setMzCalibration() : pappso::TimsFrameBase
- setMzCalibrationInterfaceSPtr() : pappso::TimsFrameBase
- setMzFormat() : pappso::MsRunId
- setMzRangeChanged() : pappso::QCPSpectrum
- setMzShift() : pappso::MzIntegrationParams
- setMzTarget() : pappso::OboChooserWidget
- setName() : pappso::QCPXic , pappso::XicWidget
- setNativeId() : pappso::MassSpectrumId
- setNeedMsLevelPeakList() : pappso::SpectrumCollectionHandlerInterface
- setNeutralLossMass() : pappso::XtandemSpectrumProcess
- setNeutralLossWindowDalton() : pappso::XtandemSpectrumProcess
- setNmostIntense() : pappso::XtandemSpectrumProcess
- setNodesToProcessCount() : pappso::MsRunDataSetTreeNodeVisitorInterface
- setOboPsiModTerm() : pappso::FilterOboPsiModSink , pappso::FilterOboPsiModTermAccession , pappso::FilterOboPsiModTermDiffMono , pappso::FilterOboPsiModTermLabel , pappso::FilterOboPsiModTermName , pappso::OboListModel::OboPsiModHandler , pappso::OboPsiModHandlerInterface
- setOrigAndLastMaxZValue() : pappso::ColorMapPlotConfig
- setOrigAndLastMinZValue() : pappso::ColorMapPlotConfig
- setOrigMaxZValue() : pappso::ColorMapPlotConfig
- setOrigMinZValue() : pappso::ColorMapPlotConfig
- setParameterValue() : pappso::QualifiedMassSpectrum
- setParent() : pappso::MsRunDataSetTreeNode
- setPen() : pappso::BasePlotWidget
- setPeptide() : pappso::EnzymeProductInterface , pappso::PeptideBuilder , pappso::PeptideMethioninRemove , pappso::PeptideModificatorPipeline , pappso::PeptideSemiEnzyme , pappso::PeptideSizeFilter
- setPeptideCharge() : pappso::MassSpectrumWidget
- setPeptideSp() : pappso::MassSpectrumWidget , pappso::PeptideFixedModificationBuilder , pappso::PeptideModificatorInterface , pappso::PeptideModificatorPipeline , pappso::PeptideModificatorTee , pappso::PeptideVariableModificationBuilder , pappso::PeptideVariableModificationReplacement
- setPlottingColor() : pappso::BaseColorMapPlotWidget , pappso::BasePlotWidget
- setPoint() : pappso::SelectionPolygon
- setPostExtractionTraceFilterCstSPtr() : pappso::MsRunXicExtractorInterface
- setPpmValueChanged() : pappso::PrecisionWidget
- setPrecision() : pappso::MzIntegrationParams , pappso::OboChooserWidget , pappso::PrecisionWidget
- setPrecursorNativeId() : pappso::QualifiedMassSpectrum
- setPrecursorSpectrumIndex() : pappso::QualifiedMassSpectrum
- setPreferedFileReaderType() : pappso::MsFileAccessor
- setProtCter() : pappso::PeptideFixedModificationBuilder , pappso::PeptideVariableModificationBuilder
- setProtElse() : pappso::PeptideFixedModificationBuilder , pappso::PeptideVariableModificationBuilder
- setProtNter() : pappso::PeptideFixedModificationBuilder , pappso::PeptideVariableModificationBuilder
- setQualifiedMassSpectrum() : pappso::MassSpectrumWidget , pappso::MsRunDataSetTreeNode , pappso::MsRunReaderRetentionTimeLine , pappso::MsRunReaderScanNumberMultiMap , pappso::MsRunReaderTicChromatogram , pappso::MsRunSimpleStatistics , pappso::MsRunXicExtractor::MsRunXicExtractorReadPoints , pappso::MzxmlOutput::Translater , pappso::SpectrumCollectionHandlerInterface
- setRank() : pappso::GrpPeptide , pappso::GrpProtein
- setReadAhead() : pappso::MzxmlOutput , pappso::SpectrumCollectionHandlerInterface
- setRefineSpectrumModel() : pappso::XtandemSpectrumProcess
- setRemoveIsotope() : pappso::XtandemSpectrumProcess
- setRemoveNonInformativeSubgroups() : pappso::GrpExperiment
- setRemoveZeroValDataPoints() : pappso::MzIntegrationParams
- setResValueChanged() : pappso::PrecisionWidget
- setRetentionTimeAroundTarget() : pappso::MsRunXicExtractorInterface
- setRetentionTimeInMinutes() : pappso::XicWidget
- setRetentionTimeInSeconds() : pappso::XicWidget
- setRightBoundary() : pappso::TracePeak
- setRtInSeconds() : pappso::QualifiedMassSpectrum
- setRtRangeChanged() : pappso::QCPXic
- setRunId() : pappso::MsRunId
- setSampleName() : pappso::MsRunId
- setSequence() : pappso::FastaHandlerInterface , pappso::Protein
- setSink() : pappso::PeptideBuilder , pappso::PeptideFixedModificationBuilder , pappso::PeptideMethioninRemove , pappso::PeptideModificatorPipeline , pappso::PeptideSemiEnzyme , pappso::PeptideSinkInterface , pappso::PeptideSizeFilter , pappso::PeptideSpSinkInterface , pappso::PeptideVariableModificationBuilder
- setSize() : pappso::MsRunSlice
- setSliceNumber() : pappso::MsRunSlice
- setSmallestMz() : pappso::MzIntegrationParams
- setSpectrum() : pappso::MsRunSlice
- setSpectrumIndex() : pappso::MassSpectrumId
- setSpectrumP() : pappso::QCPSpectrum
- setStatus() : pappso::UiMonitorInterface , pappso::UiMonitorText , pappso::UiMonitorVoid
- setSubGroupNumber() : pappso::GrpProtein , pappso::GrpSubGroup
- setSwitchValue() : pappso::SwitchWidget
- setTakeOnlyFirstWildcard() : pappso::Enzyme
- setTandemBinaryPath() : pappso::TandemWrapperRun
- setText() : pappso::HttpButton
- setTicStart() : pappso::TraceDetectionMoulon
- setTicStop() : pappso::TraceDetectionMoulon
- setTime() : pappso::TimsFrameBase
- setTimsCalibration() : pappso::TimsFrameBase
- setTitle() : pappso::UiMonitorInterface , pappso::UiMonitorText , pappso::UiMonitorVoid
- setTmpDir() : pappso::MsRunXicExtractorFactory
- setTotalSteps() : pappso::UiMonitorInterface , pappso::UiMonitorText , pappso::UiMonitorTextPercent , pappso::UiMonitorVoid
- setTracePeak() : pappso::TraceDetectionSinkInterface , pappso::TracePeakList
- setTriangleSlope() : pappso::FilterTriangle
- setupWidget() : pappso::BasePlotWidget
- setVisibleMassDelta() : pappso::MassSpectrumWidget
- setXicExtractMethod() : pappso::MsRunXicExtractorInterface
- setXmlId() : pappso::MsRunId
- setXrefOrigin() : pappso::AaModification
- sgcoeff() : pappso::FilterSavitzkyGolay
- shouldIstop() : pappso::UiMonitorInterface , pappso::UiMonitorText , pappso::UiMonitorVoid
- shouldStop() : pappso::MsRunDataSetTreeNodeVisitorInterface , pappso::SpectrumCollectionHandlerInterface
- showTracers() : pappso::BasePlotWidget
- size() : pappso::FilterOboPsiModSink , pappso::GrpMapPeptideToSubGroupSet , pappso::GrpPeptideSet , pappso::GrpSubGroupSet , pappso::MsRunDataSetTree , pappso::MsRunDataSetTreeNode , pappso::MsRunSlice , pappso::Peptide , pappso::PeptideFragment , pappso::PeptideFragmentIon , pappso::PeptideFragmentIonListBase , pappso::PeptideInterface , pappso::PeptideIsotopeSpectrumMatch , pappso::PeptideNaturalIsotope , pappso::PeptideNaturalIsotopeList , pappso::PeptideSpectrumMatch , pappso::Protein , pappso::QualifiedMassSpectrum
- sizetListDataFormatRegExp : pappso::Utils
- sortByRetentionTime() : pappso::Xic
- sortMz() : pappso::MassSpectrum
- sortX() : pappso::Trace
- sortY() : pappso::Trace
- spaceKeyReleaseEvent() : pappso::BasePlotWidget
- spectrum_index : pappso::MsRunXicExtractor::MsRunXicExtractorPoints
- spectrumListHasSize() : pappso::SpectrumCollectionHandlerInterface
- spectrumListSize() : pappso::MsRunReader , pappso::PwizMsRunReader , pappso::TimsMsRunReader , pappso::TimsMsRunReaderMs2 , pappso::TimsMsRunReaderMs2Selected , pappso::XyMsRunReader
- splitMzStringToDoubleVectorWithSpaces() : pappso::Utils
- splitSizetStringToSizetVectorWithSpaces() : pappso::Utils
- startGrouping() : pappso::GrpExperiment , pappso::GrpGroupingMonitor , pappso::GrpGroupingMonitorInterface
- startNumberingAllGroups() : pappso::GrpGroupingMonitor , pappso::GrpGroupingMonitorInterface
- startRemovingNonInformativeSubGroupsInAllGroups() : pappso::GrpGroupingMonitor , pappso::GrpGroupingMonitorInterface
- stopGrouping() : pappso::GrpGroupingMonitor , pappso::GrpGroupingMonitorInterface
- stopRemovingNonInformativeSubGroupsInAllGroups() : pappso::GrpGroupingMonitor , pappso::GrpGroupingMonitorInterface
- storeSlices() : pappso::MsRunXicExtractorDisk , pappso::MsRunXicExtractorDiskBuffer
- strip() : pappso::GrpProtein
- sumAndRemove() : pappso::FilterTriangle
- sumY() : pappso::Trace
- SwitchWidget() : pappso::SwitchWidget