grpmappeptidetosubgroupset.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include <map>
#include "grppeptide.h"
#include "grpsubgroupset.h"
#include "grppeptideset.h"
namespace pappso
{
class GrpMapPeptideToSubGroupSet
{
private:
std::map<GrpPeptide *, GrpSubGroupSet> m_mapPeptideToSubGroupSet;
public:
GrpMapPeptideToSubGroupSet();
GrpMapPeptideToSubGroupSet(const GrpMapPeptideToSubGroupSet &other);
~GrpMapPeptideToSubGroupSet();
/** @brief get all subgroups concerned by a list of peptides
*/
void getSubGroupSet(const GrpPeptideSet &peptide_set_in,
GrpSubGroupSet &impacted_subgroup_set) const;
/** @brief removes in the map all references of the group to remove
* (p_remove_sub_group)
*/
void remove(GrpSubGroup *p_remove_sub_group);
/** @brief add in the map all peptides of the subgroup to add
*/
void add(GrpSubGroup *p_add_sub_group);
/** @brief tells if this subgroup contains a specific peptide
*/
bool hasSpecificPeptide(const GrpSubGroup *get) const;
/** @brief check function only usefull for testing purpose
*/
void check(std::list<GrpSubGroupSp> &m_grpSubGroupSpList) const;
unsigned int size() const;
const QString printInfos() const;
};
} // namespace pappso
pappso::GrpMapPeptideToSubGroupSet
Definition: grpmappeptidetosubgroupset.h:37
pappso::GrpMapPeptideToSubGroupSet::~GrpMapPeptideToSubGroupSet
~GrpMapPeptideToSubGroupSet()
Definition: grpmappeptidetosubgroupset.cpp:37
pappso::GrpMapPeptideToSubGroupSet::hasSpecificPeptide
bool hasSpecificPeptide(const GrpSubGroup *get) const
tells if this subgroup contains a specific peptide
Definition: grpmappeptidetosubgroupset.cpp:169
pappso::GrpMapPeptideToSubGroupSet::GrpMapPeptideToSubGroupSet
GrpMapPeptideToSubGroupSet()
Definition: grpmappeptidetosubgroupset.cpp:33
pappso::GrpMapPeptideToSubGroupSet::size
unsigned int size() const
pappso::GrpMapPeptideToSubGroupSet::check
void check(std::list< GrpSubGroupSp > &m_grpSubGroupSpList) const
check function only usefull for testing purpose
Definition: grpmappeptidetosubgroupset.cpp:76
pappso::GrpMapPeptideToSubGroupSet::getSubGroupSet
void getSubGroupSet(const GrpPeptideSet &peptide_set_in, GrpSubGroupSet &impacted_subgroup_set) const
get all subgroups concerned by a list of peptides
Definition: grpmappeptidetosubgroupset.cpp:53
pappso::GrpMapPeptideToSubGroupSet::remove
void remove(GrpSubGroup *p_remove_sub_group)
removes in the map all references of the group to remove (p_remove_sub_group)
Definition: grpmappeptidetosubgroupset.cpp:101
pappso::GrpMapPeptideToSubGroupSet::printInfos
const QString printInfos() const
Definition: grpmappeptidetosubgroupset.cpp:208
pappso::GrpMapPeptideToSubGroupSet::m_mapPeptideToSubGroupSet
std::map< GrpPeptide *, GrpSubGroupSet > m_mapPeptideToSubGroupSet
Definition: grpmappeptidetosubgroupset.h:39
pappso::GrpMapPeptideToSubGroupSet::add
void add(GrpSubGroup *p_add_sub_group)
add in the map all peptides of the subgroup to add
Definition: grpmappeptidetosubgroupset.cpp:141
pappso::GrpPeptideSet
Definition: grppeptideset.h:36
pappso::GrpSubGroupSet
Definition: grpsubgroupset.h:34
pappso::GrpSubGroup
Definition: grpsubgroup.h:43
grppeptide.h
grppeptideset.h
grpsubgroupset.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39