xicpeptideinterface.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include "qualifiedxic.h"
#include "../peptide/peptideinterface.h"
namespace pappso
{
class XicPeptideInterface : public QualifiedXic
{
private:
const unsigned int m_z;
const PeptideInterfaceSp msp_peptideInterface;
protected:
XicPeptideInterface(const MsRunId &msrun_id,
const PeptideInterfaceSp &peptideInterfaceSp,
PrecisionPtr precision,
unsigned int charge);
public:
~XicPeptideInterface();
virtual unsigned int
getCharge() const
{
return m_z;
};
};
} // namespace pappso
pappso::MsRunId
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition: msrunid.h:53
pappso::PrecisionBase
Definition: precision.h:44
pappso::QualifiedXic
Definition: qualifiedxic.h:45
pappso::XicPeptideInterface
Definition: xicpeptideinterface.h:35
pappso::XicPeptideInterface::msp_peptideInterface
const PeptideInterfaceSp msp_peptideInterface
Definition: xicpeptideinterface.h:38
pappso::XicPeptideInterface::getCharge
virtual unsigned int getCharge() const
Definition: xicpeptideinterface.h:49
pappso::XicPeptideInterface::~XicPeptideInterface
~XicPeptideInterface()
Definition: xicpeptideinterface.cpp:41
pappso::XicPeptideInterface::XicPeptideInterface
XicPeptideInterface(const MsRunId &msrun_id, const PeptideInterfaceSp &peptideInterfaceSp, PrecisionPtr precision, unsigned int charge)
Definition: xicpeptideinterface.cpp:29
pappso::XicPeptideInterface::m_z
const unsigned int m_z
Definition: xicpeptideinterface.h:37
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::PeptideInterfaceSp
std::shared_ptr< const PeptideInterface > PeptideInterfaceSp
Definition: peptideinterface.h:38
qualifiedxic.h