fastareader.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include <QIODevice>
#include <QFile>
#include <QTextStream>
#include "fastahandlerinterface.h"
namespace pappso
{
class FastaFileIndexer;
class PMSPP_LIB_DECL FastaReader
{
friend FastaFileIndexer;
public:
FastaReader(FastaHandlerInterface &handler);
~FastaReader();
void parse(QFile &fastaFile);
void parse(QIODevice *p_inputstream);
protected:
void parseOnlyOne(QTextStream &p_in);
private:
FastaHandlerInterface &m_handler;
};
} // namespace pappso
pappso::FastaHandlerInterface
Definition: fastahandlerinterface.h:32
pappso::FastaReader
Definition: fastareader.h:34
pappso::FastaReader::m_handler
FastaHandlerInterface & m_handler
Definition: fastareader.h:48
pappso::FastaReader::FastaFileIndexer
friend FastaFileIndexer
Definition: fastareader.h:35
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
fastahandlerinterface.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39