peakionisotopematch.cpp
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/*
* *******************************************************************************
* * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
* *
* * This file is part of MassChroqPRM.
* *
* * MassChroqPRM is free software: you can redistribute it and/or modify
* * it under the terms of the GNU General Public License as published by
* * the Free Software Foundation, either version 3 of the License, or
* * (at your option) any later version.
* *
* * MassChroqPRM is distributed in the hope that it will be useful,
* * but WITHOUT ANY WARRANTY; without even the implied warranty of
* * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* * GNU General Public License for more details.
* *
* * You should have received a copy of the GNU General Public License
* * along with MassChroqPRM. If not, see <http://www.gnu.org/licenses/>.
* *
* * Contributors:
* * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
* implementation
* ******************************************************************************/
#include "peakionisotopematch.h"
namespace pappso
{
PeakIonIsotopeMatch::PeakIonIsotopeMatch(
const DataPoint &peak,
const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp,
const PeptideFragmentIonSp &ion_sp)
: PeakIonMatch(peak, ion_sp, naturalIsotopeAverageSp.get()->getCharge()),
_naturalIsotopeAverageSp(naturalIsotopeAverageSp)
{
}
PeakIonIsotopeMatch::PeakIonIsotopeMatch(const PeakIonIsotopeMatch &other)
: PeakIonMatch(other),
_naturalIsotopeAverageSp(other._naturalIsotopeAverageSp)
{
}
PeakIonIsotopeMatch::~PeakIonIsotopeMatch()
{
}
const PeptideNaturalIsotopeAverageSp &
PeakIonIsotopeMatch::getPeptideNaturalIsotopeAverageSp() const
{
return _naturalIsotopeAverageSp;
}
PeakIonIsotopeMatch &
PeakIonIsotopeMatch::operator=(const PeakIonIsotopeMatch &other)
{
_naturalIsotopeAverageSp = other._naturalIsotopeAverageSp;
return *this;
}
} // namespace pappso
pappso::PeakIonIsotopeMatch
Definition: peakionisotopematch.h:37
pappso::PeakIonIsotopeMatch::PeakIonIsotopeMatch
PeakIonIsotopeMatch(const DataPoint &peak, const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp, const PeptideFragmentIonSp &ion_sp)
Definition: peakionisotopematch.cpp:30
pappso::PeakIonIsotopeMatch::operator=
PeakIonIsotopeMatch & operator=(const PeakIonIsotopeMatch &other)
Definition: peakionisotopematch.cpp:56
pappso::PeakIonIsotopeMatch::_naturalIsotopeAverageSp
PeptideNaturalIsotopeAverageSp _naturalIsotopeAverageSp
Definition: peakionisotopematch.h:53
pappso::PeakIonIsotopeMatch::getPeptideNaturalIsotopeAverageSp
virtual const PeptideNaturalIsotopeAverageSp & getPeptideNaturalIsotopeAverageSp() const
Definition: peakionisotopematch.cpp:49
pappso::PeakIonIsotopeMatch::~PeakIonIsotopeMatch
virtual ~PeakIonIsotopeMatch()
Definition: peakionisotopematch.cpp:45
pappso::PeakIonMatch
Definition: peakionmatch.h:40
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::PeptideFragmentIonSp
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
Definition: peptidefragmention.h:44
pappso::PeptideNaturalIsotopeAverageSp
std::shared_ptr< const PeptideNaturalIsotopeAverage > PeptideNaturalIsotopeAverageSp
Definition: peptidenaturalisotopeaverage.h:37
peakionisotopematch.h
pappso::DataPoint
Definition: datapoint.h:21