grpgroupingmonitor.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include <QTextStream>
#include "../exportinmportconfig.h"
namespace pappso
{
class PMSPP_LIB_DECL GrpGroupingMonitorInterface
{
public:
virtual ~GrpGroupingMonitorInterface();
virtual void startGrouping(std::size_t total_number_protein,
std::size_t total_number_peptide) = 0;
virtual void groupingProtein() = 0;
virtual void startRemovingNonInformativeSubGroupsInAllGroups(
std::size_t total_number_group) = 0;
virtual void stopRemovingNonInformativeSubGroupsInAllGroups(
std::size_t total_number_group) = 0;
virtual void removingNonInformativeSubGroupsInGroup() = 0;
virtual void startNumberingAllGroups(std::size_t total_number_group) = 0;
virtual void stopGrouping() = 0;
};
class PMSPP_LIB_DECL GrpGroupingMonitor : public GrpGroupingMonitorInterface
{
private:
QTextStream *mp_outStream;
std::size_t m_totalNumberProtein;
std::size_t m_totalNumberPeptide;
std::size_t m_currentProtein;
public:
GrpGroupingMonitor();
virtual ~GrpGroupingMonitor();
virtual void startGrouping(std::size_t total_number_protein,
std::size_t total_number_peptide);
virtual void groupingProtein();
virtual void startRemovingNonInformativeSubGroupsInAllGroups(
std::size_t total_number_group);
virtual void stopRemovingNonInformativeSubGroupsInAllGroups(
std::size_t total_number_group);
virtual void removingNonInformativeSubGroupsInGroup();
virtual void startNumberingAllGroups(std::size_t total_number_group);
virtual void stopGrouping();
};
} // namespace pappso
pappso::GrpGroupingMonitorInterface
Definition: grpgroupingmonitor.h:33
pappso::GrpGroupingMonitorInterface::removingNonInformativeSubGroupsInGroup
virtual void removingNonInformativeSubGroupsInGroup()=0
pappso::GrpGroupingMonitorInterface::startNumberingAllGroups
virtual void startNumberingAllGroups(std::size_t total_number_group)=0
pappso::GrpGroupingMonitorInterface::startRemovingNonInformativeSubGroupsInAllGroups
virtual void startRemovingNonInformativeSubGroupsInAllGroups(std::size_t total_number_group)=0
pappso::GrpGroupingMonitorInterface::stopGrouping
virtual void stopGrouping()=0
pappso::GrpGroupingMonitorInterface::startGrouping
virtual void startGrouping(std::size_t total_number_protein, std::size_t total_number_peptide)=0
pappso::GrpGroupingMonitorInterface::groupingProtein
virtual void groupingProtein()=0
pappso::GrpGroupingMonitorInterface::stopRemovingNonInformativeSubGroupsInAllGroups
virtual void stopRemovingNonInformativeSubGroupsInAllGroups(std::size_t total_number_group)=0
pappso::GrpGroupingMonitor
Definition: grpgroupingmonitor.h:49
pappso::GrpGroupingMonitor::m_totalNumberPeptide
std::size_t m_totalNumberPeptide
Definition: grpgroupingmonitor.h:53
pappso::GrpGroupingMonitor::mp_outStream
QTextStream * mp_outStream
Definition: grpgroupingmonitor.h:51
pappso::GrpGroupingMonitor::m_totalNumberProtein
std::size_t m_totalNumberProtein
Definition: grpgroupingmonitor.h:52
pappso::GrpGroupingMonitor::m_currentProtein
std::size_t m_currentProtein
Definition: grpgroupingmonitor.h:54
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39