tracedetectionmoulon.h
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#pragma once
#include "tracedetectioninterface.h"
#include "../../processing/filters/filtermorpho.h"
namespace pappso
{
class PMSPP_LIB_DECL TraceDetectionMoulon : public TraceDetectionInterface
{
private:
FilterMorphoMean m_xicFilterSmoothing;
pappso_double m_ticStart;
pappso_double m_ticStop;
public:
TraceDetectionMoulon(unsigned int smoothing_half_window_length,
pappso_double tic_start,
pappso_double tic_stop);
TraceDetectionMoulon(const TraceDetectionMoulon &other);
virtual ~TraceDetectionMoulon();
void setFilterMorphoMean(const FilterMorphoMean &smooth);
void setTicStart(double tic_start);
void setTicStop(double tic_stop);
unsigned int getSmoothingHalfEdgeWindows() const;
pappso_double getTicStart() const;
pappso_double getTicStop() const;
void detect(const Trace &xic,
TraceDetectionSinkInterface &sink) const override;
};
} // namespace pappso
pappso::FilterMorphoMean
mean filter apply mean of y values inside the window : this results in a kind of smoothing
Definition: filtermorpho.h:210
pappso::TraceDetectionInterface
Definition: tracedetectioninterface.h:44
pappso::TraceDetectionMoulon
Definition: tracedetectionmoulon.h:35
pappso::TraceDetectionMoulon::m_xicFilterSmoothing
FilterMorphoMean m_xicFilterSmoothing
Definition: tracedetectionmoulon.h:37
pappso::TraceDetectionMoulon::m_ticStop
pappso_double m_ticStop
Definition: tracedetectionmoulon.h:39
pappso::TraceDetectionMoulon::m_ticStart
pappso_double m_ticStart
Definition: tracedetectionmoulon.h:38
pappso::TraceDetectionSinkInterface
Definition: tracedetectioninterface.h:38
pappso::Trace
A simple container of DataPoint instances.
Definition: trace.h:148
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::pappso_double
double pappso_double
A type definition for doubles.
Definition: types.h:48
tracedetectioninterface.h