### - r -

- raise() : pappso::PappsoException
- range() : pappso::SelectionPolygon
- rangeX() : pappso::SelectionPolygon
- rangeY() : pappso::SelectionPolygon
- rawReaderSpectrumCollectionByMsLevel() : pappso::TimsData
- rbegin() : pappso::Peptide
- read() : pappso::XmlStreamReaderInterface
- read_note() : pappso::XtandemPresetReader
- readFile() : pappso::XmlStreamReaderInterface
- readSpectrumCollection() : pappso::MsRunReader , pappso::PwizMsRunReader , pappso::TimsMsRunReader , pappso::TimsMsRunReaderMs2 , pappso::TimsMsRunReaderMs2Selected , pappso::XyMsRunReader
- readSpectrumCollectionByMsLevel() : pappso::MsRunReader , pappso::PwizMsRunReader , pappso::TimsMsRunReader , pappso::TimsMsRunReaderMs2 , pappso::XyMsRunReader
- readStream() : pappso::WrapTandemInput , pappso::WrapTandemResults , pappso::XmlStreamReaderInterface , pappso::XtandemPresetReader
- readTandemPresetFile() : pappso::TandemWrapperRun
- readyReadStandardError() : pappso::TandemWrapperRun
- readyReadStandardOutput() : pappso::TandemWrapperRun
- realft() : pappso::FilterSavitzkyGolay
- reconstructTrace() : pappso::FilterLowIntensitySignalRemoval
- recordDragDirections() : pappso::BasePlotContext
- recursiveDepletion() : pappso::PeptideNaturalIsotopeAverage
- redrawPlotBackground() : pappso::BasePlotWidget
- refreshBaseContext() : pappso::MassSpecTracePlotWidget
- releaseDevice() : pappso::MsRunReader , pappso::PwizMsRunReader , pappso::TimsMsRunReader , pappso::TimsMsRunReaderMs2 , pappso::XyMsRunReader
- remove() : pappso::GrpMapPeptideToSubGroupSet , pappso::GrpSubGroupSet
- removeAaModification() : pappso::Aa , pappso::Peptide
- removeCterAminoAcid() : pappso::Peptide
- removeDataSetQualMassSpectraOutsideDtRtRange() : pappso::MsRunDataSetTree
- removeDataSetTreeNodesOutsideDtRtRange() : pappso::MsRunDataSetTree
- removeFirstNonInformativeSubGroup() : pappso::GrpGroup
- removeInternalCterModification() : pappso::Aa , pappso::Peptide
- removeInternalNterModification() : pappso::Aa , pappso::Peptide
- removeNonInformativeSubGroups() : pappso::GrpExperiment , pappso::GrpGroup
- removeNterAminoAcid() : pappso::Peptide
- removeTraceInExclusionMargin() : pappso::FilterMzExclusion
- removeTranslationStop() : pappso::Protein
- removingNonInformativeSubGroupsInGroup() : pappso::GrpGroupingMonitor , pappso::GrpGroupingMonitorInterface
- rend() : pappso::Peptide
- replaceAaModification() : pappso::Aa , pappso::Peptide
- replaceLeucineIsoleucine() : pappso::AaBase , pappso::Peptide
- replaceModificationsAtPosition() : pappso::PeptideVariableModificationReplacement
- replaceWildcards() : pappso::Enzyme
- replotAll() : pappso::XicWidget
- replotWithAxesRanges() : pappso::BasePlotWidget
- replotWithAxisRangeX() : pappso::BasePlotWidget
- replotWithAxisRangeY() : pappso::BasePlotWidget
- rescale() : pappso::MassSpectrumWidget , pappso::QCPSpectrum , pappso::QCPXic , pappso::XicWidget
- rescaleOneRange() : pappso::XicWidget
- reset() : pappso::DataPoint , pappso::MzIntegrationParams , pappso::XicCoord , pappso::XicCoordTims , pappso::XtandemHyperscoreBis
- resetAxesRangeHistory() : pappso::BasePlotWidget
- resetPoints() : pappso::SelectionPolygon
- resetSelectionRectangle() : pappso::BasePlotWidget
- resolvingPowerComputationSignal() : pappso::MassSpecTracePlotWidget
- ResPrecision() : pappso::ResPrecision
- restoreAxesRangeHistory() : pappso::BasePlotWidget
- restorePreviousAxesRangeHistory() : pappso::BasePlotWidget
- reverse() : pappso::Peptide , pappso::Protein
- rotate() : pappso::Peptide
- roundToDecimal32bitsAsLongLongInt() : pappso::Utils
- roundToDecimals() : pappso::Utils
- rowCount() : pappso::OboListModel
- rtChanged() : pappso::XicWidget
- rtChangeEvent() : pappso::XicWidget
- run() : pappso::TandemWrapperRun
- runFilter() : pappso::FilterSavitzkyGolay
- runTandem() : pappso::TandemWrapperRun