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pappso::PwizMsRunReader Member List

This is the complete list of members for pappso::PwizMsRunReader, including all inherited members.

accept(const QString &file_name) const override | pappso::PwizMsRunReader | protected virtual
acquireDevice() override | pappso::PwizMsRunReader | virtual
checkNativeId(const pwiz::msdata::Spectrum *pwiz_spectrum_ptr, MassSpectrumId &mass_spectrum_id) const | pappso::PwizMsRunReader | protected
getMsDataPtr() const | pappso::PwizMsRunReader |
getMsRunId() const | pappso::MsRunReader |
getOboPsiModTermInstrumentModelName() const override | pappso::PwizMsRunReader | protected virtual
getOboPsiModTermNativeIDFormat() const | pappso::PwizMsRunReader |
getPwizSpectrumPtr(pwiz::msdata::SpectrumList *p_spectrum_list, std::size_t spectrum_index, bool want_binary_data) const | pappso::PwizMsRunReader | protected
getRetentionTimeLine() | pappso::MsRunReader | virtual
getTicChromatogram() | pappso::MsRunReader | virtual
hasScanNumbers() const override | pappso::PwizMsRunReader | virtual
initialize() override | pappso::PwizMsRunReader | protected virtual
isMonoThread() const | pappso::MsRunReader |
m_hasScanNumbers | pappso::PwizMsRunReader | private
m_isMonoThread | pappso::MsRunReader | private
m_mutex | pappso::PwizMsRunReader | protected static
massSpectrumCstSPtr(std::size_t spectrum_index) override | pappso::PwizMsRunReader | virtual
massSpectrumSPtr(std::size_t spectrum_index) override | pappso::PwizMsRunReader | virtual
mcsp_msRunId | pappso::MsRunReader | protected
mpa_multiMapScanNumber | pappso::MsRunReader | protected
MsFileAccessor class | pappso::PwizMsRunReader | friend
msp_msData | pappso::PwizMsRunReader | protected
MsRunReader(const MsRunIdCstSPtr &ms_run_id) | pappso::MsRunReader |
MsRunReader(const MsRunReader &other) | pappso::MsRunReader |
newXicCoordSPtrFromQualifiedMassSpectrum(const pappso::QualifiedMassSpectrum &mass_spectrum, pappso::PrecisionPtr precision) const override | pappso::PwizMsRunReader | virtual
newXicCoordSPtrFromSpectrumIndex(std::size_t spectrum_index, pappso::PrecisionPtr precision) const override | pappso::PwizMsRunReader | virtual
processDriftTime(pwiz::msdata::Spectrum *spectrum_p, QualifiedMassSpectrum &qualified_mass_spectrum) const | pappso::PwizMsRunReader | protected
processRetentionTime(pwiz::msdata::Spectrum *spectrum_p, QualifiedMassSpectrum &qualified_mass_spectrum) const | pappso::PwizMsRunReader | protected
PwizMsRunReader(MsRunIdCstSPtr &msrun_id_csp) | pappso::PwizMsRunReader |
qualifiedMassSpectrum(std::size_t spectrum_index, bool want_binary_data=true) const override | pappso::PwizMsRunReader | virtual
qualifiedMassSpectrumFromPwizMSData(std::size_t spectrum_index, bool want_binary_data, bool &ok) const | pappso::PwizMsRunReader | protected
qualifiedMassSpectrumFromPwizSpectrumPtr(const MassSpectrumId &massSpectrumId, pwiz::msdata::Spectrum *spectrum_p, bool want_binary_data, bool &ok) const | pappso::PwizMsRunReader | protected
readSpectrumCollection(SpectrumCollectionHandlerInterface &handler) override | pappso::PwizMsRunReader | virtual
readSpectrumCollection2(const MsRunReadConfig &config, SpectrumCollectionHandlerInterface &handler) override | pappso::PwizMsRunReader | virtual
readSpectrumCollectionByMsLevel(SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) override | pappso::PwizMsRunReader | virtual
readSpectrumCollectionWithMsrunReadConfig(const MsRunReadConfig &config, SpectrumCollectionHandlerInterface &handler) | pappso::PwizMsRunReader | protected virtual
releaseDevice() override | pappso::PwizMsRunReader | virtual
scanNumber2SpectrumIndex(std::size_t scan_number) | pappso::MsRunReader | virtual
setGlobalLocaleToCurrentOs(const std::string &environment_locale) | pappso::PwizMsRunReader | protected static
setGlobalLocaleToEnglish() | pappso::PwizMsRunReader | protected static
setMonoThread(bool is_mono_thread) | pappso::MsRunReader |
spectrumListSize() const override | pappso::PwizMsRunReader | virtual
spectrumStringIdentifier2SpectrumIndex(const QString &spectrum_identifier) override | pappso::PwizMsRunReader | virtual
~MsRunReader() | pappso::MsRunReader | virtual
~PwizMsRunReader() | pappso::PwizMsRunReader | virtual