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xicpeptidefragmentionnaturalisotope.cpp
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/*
* *******************************************************************************
* * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
* *
* * This file is part of MassChroqPRM.
* *
* * MassChroqPRM is free software: you can redistribute it and/or modify
* * it under the terms of the GNU General Public License as published by
* * the Free Software Foundation, either version 3 of the License, or
* * (at your option) any later version.
* *
* * MassChroqPRM is distributed in the hope that it will be useful,
* * but WITHOUT ANY WARRANTY; without even the implied warranty of
* * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* * GNU General Public License for more details.
* *
* * You should have received a copy of the GNU General Public License
* * along with MassChroqPRM. If not, see <http://www.gnu.org/licenses/>.
* *
* * Contributors:
* * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
* implementation
* ******************************************************************************/
#include "xicpeptidefragmentionnaturalisotope.h"
namespace pappso
{
XicPeptideFragmentIonNaturalIsotope::XicPeptideFragmentIonNaturalIsotope(
const MsRunId &msrun_id,
const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp,
const PeptideFragmentIonSp &peptideFragmentIonSp)
: QualifiedXic(msrun_id,
naturalIsotopeAverageSp.get()->getMz(),
naturalIsotopeAverageSp.get()->getPrecision()),
msp_naturalIsotopeAverage(naturalIsotopeAverageSp),
msp_peptideFragmentIon(peptideFragmentIonSp)
{
qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
"XicPeptideFragmentIonNaturalIsotope begin";
qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
"XicPeptideFragmentIonNaturalIsotope 1 "
<< msp_naturalIsotopeAverage.get();
qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
"XicPeptideFragmentIonNaturalIsotope 2 "
<< msp_peptideFragmentIon.get();
}
XicPeptideFragmentIonNaturalIsotope::~XicPeptideFragmentIonNaturalIsotope()
{
}
XicPeptideFragmentIonNaturalIsotope::XicPeptideFragmentIonNaturalIsotope(
const XicPeptideFragmentIonNaturalIsotope &other)
: QualifiedXic(other)
{
qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
"XicPeptideFragmentIonNaturalIsotope copy begin";
msp_naturalIsotopeAverage = other.msp_naturalIsotopeAverage;
msp_peptideFragmentIon = other.msp_peptideFragmentIon;
qDebug() << "XicPeptideFragmentIonNaturalIsotope::"
"XicPeptideFragmentIonNaturalIsotope copy end";
}
} // namespace pappso
pappso::MsRunId
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition msrunid.h:54
pappso::QualifiedXic::QualifiedXic
QualifiedXic(const MsRunId &msrun_id, pappso_double mz, PrecisionPtr precision)
Definition qualifiedxic.cpp:33
pappso::QualifiedXic::getMz
pappso_double getMz() const
Definition qualifiedxic.h:62
pappso::XicPeptideFragmentIonNaturalIsotope::msp_peptideFragmentIon
PeptideFragmentIonSp msp_peptideFragmentIon
Definition xicpeptidefragmentionnaturalisotope.h:39
pappso::XicPeptideFragmentIonNaturalIsotope::msp_naturalIsotopeAverage
PeptideNaturalIsotopeAverageSp msp_naturalIsotopeAverage
Definition xicpeptidefragmentionnaturalisotope.h:38
pappso::XicPeptideFragmentIonNaturalIsotope::~XicPeptideFragmentIonNaturalIsotope
~XicPeptideFragmentIonNaturalIsotope()
Definition xicpeptidefragmentionnaturalisotope.cpp:51
pappso::XicPeptideFragmentIonNaturalIsotope::XicPeptideFragmentIonNaturalIsotope
XicPeptideFragmentIonNaturalIsotope(const MsRunId &msrun_id, const PeptideNaturalIsotopeAverageSp &naturalIsotopeAverageSp, const PeptideFragmentIonSp &peptideFragmentIonSp)
Definition xicpeptidefragmentionnaturalisotope.cpp:29
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
pappso::PeptideFragmentIonSp
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
Definition peptidefragmention.h:46
pappso::PeptideNaturalIsotopeAverageSp
std::shared_ptr< const PeptideNaturalIsotopeAverage > PeptideNaturalIsotopeAverageSp
Definition peptidenaturalisotopeaverage.h:40
xicpeptidefragmentionnaturalisotope.h