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obounimod.h
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/**
* \file pappsomspp/obo/obounimod.h
* \date 06/04/2025
* \author Olivier Langella
* \brief OBO UNIMOD file parser
**/
/*******************************************************************************
* Copyright (c) 2025 Olivier Langella
*<Olivier.Langella@universite-paris-saclay.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "pappsomspp/core/types.h"
#include "pappsomspp/export-import-config.h"
#include "obopsimodterm.h"
#include "obopsimodhandlerinterface.h"
namespace pappso
{
class PMSPP_LIB_DECL OboUnimod
{
public:
OboUnimod(OboPsiModHandlerInterface &handler);
virtual ~OboUnimod();
private:
OboPsiModTerm m_term;
OboPsiModHandlerInterface &m_handler;
/** @brief starts reading obo file and reports each term with the callback
* function
*/
void parse();
};
} // namespace pappso
pappso::OboPsiModHandlerInterface
Definition obopsimodhandlerinterface.h:31
pappso::OboPsiModTerm
Definition obopsimodterm.h:34
pappso::OboUnimod::OboUnimod
OboUnimod(OboPsiModHandlerInterface &handler)
Definition obounimod.cpp:45
pappso::OboUnimod::parse
void parse()
starts reading obo file and reports each term with the callback function
Definition obounimod.cpp:59
pappso::OboUnimod::m_handler
OboPsiModHandlerInterface & m_handler
Definition obounimod.h:46
pappso::OboUnimod::m_term
OboPsiModTerm m_term
Definition obounimod.h:45
export-import-config.h
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition export-import-config.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
obopsimodhandlerinterface.h
obopsimodterm.h
types.h