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timsxicextractorinterface.h
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/**
* \file pappsomspp/vendors/tims/xicextractor/timsxicextractorinterface.h
* \date 21/09/2019
* \author Olivier Langella
* \brief minimum functions to extract XICs from Tims Data
*/
/*******************************************************************************
* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "../../../mzrange.h"
#include "../../../xic/xic.h"
#include "../timsdata.h"
#include "../../../xicextractor/msrunxicextractorinterface.h"
namespace pappso
{
/**
* @todo set of minimum functions to build XICs using Tims data
*/
class TimsXicExtractorInterface : public MsRunXicExtractorInterface
{
friend TimsData;
public:
TimsXicExtractorInterface(MsRunReaderSPtr &msrun_reader);
virtual ~TimsXicExtractorInterface();
protected:
TimsData *mp_timsData;
};
} // namespace pappso
pappso::MsRunXicExtractorInterface::MsRunXicExtractorInterface
MsRunXicExtractorInterface(MsRunReaderSPtr &msrun_reader)
constructor is private, use the MsRunXicExtractorFactory
Definition msrunxicextractorinterface.cpp:40
pappso::TimsXicExtractorInterface::~TimsXicExtractorInterface
virtual ~TimsXicExtractorInterface()
Definition timsxicextractorinterface.cpp:51
pappso::TimsXicExtractorInterface::mp_timsData
TimsData * mp_timsData
Definition timsxicextractorinterface.h:51
pappso::TimsXicExtractorInterface::TimsXicExtractorInterface
TimsXicExtractorInterface(MsRunReaderSPtr &msrun_reader)
Definition timsxicextractorinterface.cpp:34
pappso::TimsXicExtractorInterface::TimsData
friend TimsData
Definition timsxicextractorinterface.h:44
msrunxicextractorinterface.h
mzrange.h
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
pappso::MsRunReaderSPtr
std::shared_ptr< MsRunReader > MsRunReaderSPtr
Definition msrunreader.h:57
timsdata.h
xic.h