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pappso::masschroq::MsRunPeptideList Member List

This is the complete list of members for pappso::masschroq::MsRunPeptideList, including all inherited members.

addMbrPeptideMeasurementsSp2XicCoordList(const MsRunGroup *msrun_group_p, const QuantificationMethodSp &quantification_method, const PeptideSp &peptide, std::vector< pappso::XicCoordSPtr > &xic_coord_list) | pappso::masschroq::MsRunPeptideList | private
addPeptideObservation2XicCoordList(const MsRunGroup *msrun_group_p, const QuantificationMethodSp &quantification_method, const PeptideObservationSp &peptide_events_sp, std::vector< pappso::XicCoordSPtr > &xic_coord_list) | pappso::masschroq::MsRunPeptideList | private
addPeptideScanNumberObservation(PeptideSp peptide_sp, PeptideLabel *p_label, std::size_t spectrum_index, std::uint8_t charge) | pappso::masschroq::MsRunPeptideList |
addPeptideSpectrumIndexObservation(PeptideSp peptide_sp, PeptideLabel *p_label, std::size_t spectrum_index, std::uint8_t charge) | pappso::masschroq::MsRunPeptideList |
buildMsRunRetentionTimeSpOnPeptideObservations(const AlignmentMethodSp &alignment_method) | pappso::masschroq::MsRunPeptideList |
buildXicCoordList(const MsRunGroup *msrun_group_p, const QuantificationMethodSp &quantification_method) | pappso::masschroq::MsRunPeptideList | private
clearMeasurements() | pappso::masschroq::MsRunPeptideList |
collectPeptideMs2RetentionTime(const pappso::MsRunRetentionTime< QString > *msrun_retention_time_reference_p) const | pappso::masschroq::MsRunPeptideList |
collectPeptidePeakRetentionTime(const pappso::MsRunRetentionTime< QString > *msrun_retention_time_reference_p) const | pappso::masschroq::MsRunPeptideList |
detectQuantifyPeaks(pappso::UiMonitorInterface &m_uiMonitor, const QuantificationMethodSp &quantification_method) | pappso::masschroq::MsRunPeptideList | private
flushChromatogramTraces() | pappso::masschroq::MsRunPeptideList |
getMbrPeptideMeasurementsList() const | pappso::masschroq::MsRunPeptideList |
getMsRunRetentionTimeConstPtr() const | pappso::masschroq::MsRunPeptideList |
getMsRunRetentionTimePtr() const | pappso::masschroq::MsRunPeptideList |
getMsRunSp() const | pappso::masschroq::MsRunPeptideList |
getPeptideMeasurementsList() const | pappso::masschroq::MsRunPeptideList |
m_mbrPeptideMeasurementsList | pappso::masschroq::MsRunPeptideList | private
m_peptideMeasurementsList | pappso::masschroq::MsRunPeptideList | private
m_peptideObservationList | pappso::masschroq::MsRunPeptideList | private
mbrDetectQuantifyPeaks(pappso::UiMonitorInterface &m_uiMonitor, const QuantificationMethodSp &quantification_method) | pappso::masschroq::MsRunPeptideList | private
msp_msRun | pappso::masschroq::MsRunPeptideList | private
msp_msRunRetentionTime | pappso::masschroq::MsRunPeptideList | private
MsRunPeptideList(MsRunSp msrun) | pappso::masschroq::MsRunPeptideList |
MsRunPeptideList(const MsRunPeptideList &other) | pappso::masschroq::MsRunPeptideList |
quantify(const MsRunGroup *msrun_group_p, const QString &tmp_dir, pappso::UiMonitorInterface &m_uiMonitor, const QuantificationMethodSp &quantification_method) | pappso::masschroq::MsRunPeptideList |
quantifyMatchBetweenRun(const MsRunGroup *msrun_group_p, const std::vector< PeptideSp > &peptide_mbr_list, const QString &tmp_dir, pappso::UiMonitorInterface &m_uiMonitor, const QuantificationMethodSp &quantification_method) | pappso::masschroq::MsRunPeptideList |
~MsRunPeptideList() | pappso::masschroq::MsRunPeptideList | virtual