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timsmsfilereader.h
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/**
* \file pappsomspp/msfile/timsmsfilereader.h
* \date 06/09/2019
* \author Olivier Langella
* \brief MSrun file reader for native Bruker TimsTOF raw data
*/
/*******************************************************************************
* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "msfilereader.h"
#include "pappsomspp/core/msrun/msrunid.h"
#include "pappsomspp/core/msrun/msrunreader.h"
namespace pappso
{
/**
* @todo write docs
*/
class TimsMsFileReader : MsFileReader
{
public:
TimsMsFileReader(const QString &file_name);
virtual ~TimsMsFileReader();
virtual Enums::MsDataFormat getFileFormat() override;
virtual std::vector<MsRunIdCstSPtr>
getMsRunIds(const QString &run_prefix) override;
MsRunReader *selectMsRunReader(const QString &file_name) const;
private:
virtual std::size_t initialize();
};
} // namespace pappso
pappso::MsFileReader::MsFileReader
MsFileReader(const QString &file_name)
Definition msfilereader.cpp:19
pappso::MsRunReader
base class to read MSrun the only way to build a MsRunReader object is to use the MsRunReaderFactory
Definition msrunreader.h:64
pappso::TimsMsFileReader::getFileFormat
virtual Enums::MsDataFormat getFileFormat() override
Definition timsmsfilereader.cpp:84
pappso::TimsMsFileReader::~TimsMsFileReader
virtual ~TimsMsFileReader()
Definition timsmsfilereader.cpp:45
pappso::TimsMsFileReader::initialize
virtual std::size_t initialize()
Definition timsmsfilereader.cpp:51
pappso::TimsMsFileReader::getMsRunIds
virtual std::vector< MsRunIdCstSPtr > getMsRunIds(const QString &run_prefix) override
Definition timsmsfilereader.cpp:91
pappso::TimsMsFileReader::TimsMsFileReader
TimsMsFileReader(const QString &file_name)
Definition timsmsfilereader.cpp:39
pappso::TimsMsFileReader::selectMsRunReader
MsRunReader * selectMsRunReader(const QString &file_name) const
msfilereader.h
msrunid.h
msrunreader.h
pappso::Enums::MsDataFormat
MsDataFormat
Definition types.h:148
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39