Loading...
Searching...
No Matches
pappso::cbor::psm::PsmSpecPeptidOmsScan Member List

This is the complete list of members for pappso::cbor::psm::PsmSpecPeptidOmsScan, including all inherited members.

addPsmEvalVectorDouble(const QString &eval_name, const QString &eval_value_key, std::vector< double >::iterator begin, std::vector< double >::const_iterator end) | pappso::cbor::psm::CborScanMapBase |
CborScanMapBase(const PsmFileScanProcess &psm_file_scan_process) | pappso::cbor::psm::CborScanMapBase |
filterAndSortPsmList() override | pappso::cbor::psm::PsmSpecPeptidOmsScan | virtual
filterPsmListUniqueUniqueProforma() | pappso::cbor::psm::CborScanMapBase |
fixPositionStart(bool is_reverse, QCborMap &new_cbor_psm, std::size_t offset_position) const | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected
getCborPsmList() const | pappso::cbor::psm::CborScanMapBase |
getCborScanId() const | pappso::cbor::psm::CborScanMapBase |
getCborScanPrecursor() const | pappso::cbor::psm::CborScanMapBase |
getCurrentQualifiedMassSpectrumSPtr() const | pappso::cbor::psm::CborScanMapBase | protected
m_decoyPrefix | pappso::cbor::psm::PsmSpecPeptidOmsScan | private
m_PsmFileScanProcess | pappso::cbor::psm::CborScanMapBase | protected
mp_psmSpecPeptidOms | pappso::cbor::psm::PsmSpecPeptidOmsScan | private
populateProteinMapUsingOldProteinMap(const PsmProteinMap &old_protein_map, PsmProteinMap &new_protein_map) const | pappso::cbor::psm::CborScanMapBase |
process() override | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected virtual
PsmSpecPeptidOmsScan(const PsmSpecPeptidOms &psm_specpeptidoms, pappso::PrecisionPtr fragment_tolerance) | pappso::cbor::psm::PsmSpecPeptidOmsScan |
sequenceAlignment(bool is_reverse, const QCborMap &old_cbor_psm_map, QCborArray &new_psm_arr, pappso::specpeptidoms::SpOMSSpectrumCsp &experimental_spectrum, pappso::specpeptidoms::SemiGlobalAlignment &semi_global_alignment, const pappso::specpeptidoms::SpOMSProtein *protein_ptr) | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected
storeAlignment(bool is_reverse, const QCborMap &old_cbor_psm, QCborMap &new_cbor_psm, const QString &accession, const pappso::specpeptidoms::Alignment &alignment) | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected
~CborScanMapBase() | pappso::cbor::psm::CborScanMapBase | virtual
~PsmSpecPeptidOmsScan() | pappso::cbor::psm::PsmSpecPeptidOmsScan | virtual