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pappso::PeptideVariableModificationReplacement Member List

This is the complete list of members for pappso::PeptideVariableModificationReplacement, including all inherited members.

addAa(char aa) | pappso::PeptideVariableModificationBuilder |
getModificationPositionList(std::vector< unsigned int > &position_list, const QString &peptide_str) final | pappso::PeptideModificatorBase | protected virtual
getModificationPositionList(std::vector< unsigned int > &position_list, const Peptide *p_peptide, AaModificationP mod, unsigned int modification_counter) | pappso::PeptideModificatorBase | protected virtual
m_aaModificationList | pappso::PeptideVariableModificationBuilder | private
m_isProtCterMod | pappso::PeptideVariableModificationBuilder | protected
m_isProtElseMod | pappso::PeptideVariableModificationBuilder | protected
m_isProtNterMod | pappso::PeptideVariableModificationBuilder | protected
m_maxNumberMod | pappso::PeptideVariableModificationBuilder | protected
m_minNumberMod | pappso::PeptideVariableModificationBuilder | protected
m_modificationCount | pappso::PeptideVariableModificationBuilder | protected
m_pattern | pappso::PeptideModificatorBase | protected
m_sink | pappso::PeptideVariableModificationBuilder | protected
mp_mod | pappso::PeptideVariableModificationBuilder | protected
mp_modAfter | pappso::PeptideVariableModificationReplacement | private
next_combination(const std::vector< unsigned int >::iterator first, std::vector< unsigned int >::iterator k, const std::vector< unsigned int >::iterator last) | pappso::PeptideVariableModificationBuilder | protected static
PeptideModificatorBase() | pappso::PeptideModificatorBase |
PeptideVariableModificationBuilder(AaModificationP mod) | pappso::PeptideVariableModificationBuilder |
PeptideVariableModificationReplacement(AaModificationP mod_before, AaModificationP mod_after) | pappso::PeptideVariableModificationReplacement |
replaceModificationsAtPosition(Peptide &new_peptide, unsigned int position) | pappso::PeptideVariableModificationReplacement | private
setMaxNumberMod(unsigned int max_num) | pappso::PeptideVariableModificationBuilder | inline
setMinNumberMod(unsigned int min_num) | pappso::PeptideVariableModificationBuilder | inline
setModificationCounter(unsigned int counter) | pappso::PeptideVariableModificationBuilder | inline
setModificationPattern(QString &pattern) final | pappso::PeptideModificatorBase | virtual
setPeptideSp(std::int8_t sequence_database_id, const ProteinSp &protein_sp, bool is_decoy, const PeptideSp &peptide_sp_original, unsigned int start, bool is_nter, unsigned int missed_cleavage_number, bool semi_enzyme) override | pappso::PeptideVariableModificationReplacement | virtual
setProtCter(bool arg1) | pappso::PeptideVariableModificationBuilder | inline
setProtElse(bool arg1) | pappso::PeptideVariableModificationBuilder | inline
setProtNter(bool arg1) | pappso::PeptideVariableModificationBuilder | inline
setSink(PeptideModificatorInterface *sink) override | pappso::PeptideVariableModificationBuilder | inline virtual
~PeptideModificatorBase() | pappso::PeptideModificatorBase | virtual
~PeptideModificatorInterface() | pappso::PeptideModificatorInterface | inline virtual
~PeptideVariableModificationBuilder() | pappso::PeptideVariableModificationBuilder | virtual
~PeptideVariableModificationReplacement() | pappso::PeptideVariableModificationReplacement | virtual