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protein Directory Reference

## Files

| enzyme.cpp
| enzyme.h
| enzymeproductinterface.h
| peptidebuilder.cpp
| peptidebuilder.h
| peptidefixedmodificationbuilder.cpp
| peptidefixedmodificationbuilder.h
| peptidemethioninremove.cpp
| peptidemethioninremove.h
| peptidemodificatorbase.cpp
| peptidemodificatorbase.h
| base class for all peptide modification builders
| peptidemodificatorpipeline.cpp
| peptidemodificatorpipeline.h
| peptidemodificatortee.cpp
| peptidemodificatortee.h
| peptidesemienzyme.cpp
| peptidesemienzyme.h
| peptidesizefilter.cpp
| peptidesizefilter.h
| peptidevariablemodificationbuilder.cpp
| peptidevariablemodificationbuilder.h
| peptidevariablemodificationreplacement.cpp
| peptidevariablemodificationreplacement.h
| potential replacement of a modification by an other
| protein.cpp
| protein.h
| proteinintegercode.cpp
| transform protein amino acid sequence into vectors of amino acid codes
| proteinintegercode.h
| transform protein amino acid sequence into vectors of amino acid codes
| proteinpeptidelist.cpp
| proteinpeptidelist.h
| proteinpresenceabsencematrix.cpp
| presence/absence matrix of amino acid code along the protein sequence
| proteinpresenceabsencematrix.h
| presence/absence matrix of amino acid code along the protein sequence