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xicpeptidefragmention.cpp
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/*******************************************************************************
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
*implementation
******************************************************************************/
#include "xicpeptidefragmention.h"
namespace pappso
{
XicPeptideFragmentIon::XicPeptideFragmentIon(const MsRunId &msrun_id,
const PeptideFragmentIonSp &peptideFragmentIonSp,
unsigned int z,
PrecisionPtr precision)
: XicPeptideInterface(msrun_id, peptideFragmentIonSp, precision, z),
msp_peptideFragmentIon(peptideFragmentIonSp)
{
}
XicPeptideFragmentIon::~XicPeptideFragmentIon()
{
}
XicPeptideFragmentIon::XicPeptideFragmentIon(const XicPeptideFragmentIon &other)
: XicPeptideInterface(other), msp_peptideFragmentIon(other.msp_peptideFragmentIon)
{
}
} // namespace pappso
pappso::MsRunId
MS run identity MsRunId identifies an MS run with a unique ID (XmlId) and contains eventually informa...
Definition msrunid.h:54
pappso::XicPeptideFragmentIon::msp_peptideFragmentIon
const PeptideFragmentIonSp msp_peptideFragmentIon
Definition xicpeptidefragmention.h:35
pappso::XicPeptideFragmentIon::~XicPeptideFragmentIon
~XicPeptideFragmentIon()
Definition xicpeptidefragmention.cpp:38
pappso::XicPeptideFragmentIon::XicPeptideFragmentIon
XicPeptideFragmentIon(const MsRunId &msrun_id, const PeptideFragmentIonSp &peptideFragmentIonSp, unsigned int z, PrecisionPtr precision)
Definition xicpeptidefragmention.cpp:29
pappso::XicPeptideInterface::XicPeptideInterface
XicPeptideInterface(const MsRunId &msrun_id, const PeptideInterfaceSp &peptideInterfaceSp, PrecisionPtr precision, unsigned int charge)
Definition xicpeptideinterface.cpp:29
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
pappso::PeptideFragmentIonSp
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
Definition peptidefragmention.h:46
pappso::PeptideIonCter::z
@ z
Definition peptide.h:90
pappso::PrecisionPtr
const PrecisionBase * PrecisionPtr
Definition precision.h:122
xicpeptidefragmention.h