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filterobopsimodmap.h
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/**
* \file pappsomspp/obo/obopsimodmap.h
* \date 2/10/2024
* \author Olivier Langella
* \brief map container for obo psi mod terms
**/
/*******************************************************************************
* Copyright (c) 2024 Olivier Langella
*<Olivier.Langella@universite-paris-saclay.fr>.
*
* This file is part of the PAPPSOms++ library.
*
* PAPPSOms++ is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* PAPPSOms++ is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "obopsimod.h"
namespace pappso
{
class PMSPP_LIB_DECL FilterOboPsiModMap : public OboPsiModHandlerInterface
{
public:
FilterOboPsiModMap();
/**
* Destructor
*/
virtual ~FilterOboPsiModMap();
virtual void setOboPsiModTerm(const OboPsiModTerm &term) override;
const OboPsiModTerm &getOboPsiModTermWithAccession(const QString &accession) const;
/** @brief get the first occurence of term with this name
* @warning not reliable, it does not check for unicity
*/
const OboPsiModTerm &getOboPsiModTermWithName(const QString &name) const;
private:
std::map<QString, const OboPsiModTerm> m_mapOboPsiModTerm;
};
} // namespace pappso
pappso::FilterOboPsiModMap::getOboPsiModTermWithAccession
const OboPsiModTerm & getOboPsiModTermWithAccession(const QString &accession) const
Definition filterobopsimodmap.cpp:49
pappso::FilterOboPsiModMap::getOboPsiModTermWithName
const OboPsiModTerm & getOboPsiModTermWithName(const QString &name) const
get the first occurence of term with this name
Definition filterobopsimodmap.cpp:61
pappso::FilterOboPsiModMap::m_mapOboPsiModTerm
std::map< QString, const OboPsiModTerm > m_mapOboPsiModTerm
Definition filterobopsimodmap.h:57
pappso::FilterOboPsiModMap::setOboPsiModTerm
virtual void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
Definition filterobopsimodmap.cpp:43
pappso::FilterOboPsiModMap::FilterOboPsiModMap
FilterOboPsiModMap()
Definition filterobopsimodmap.cpp:33
pappso::OboPsiModHandlerInterface
Definition obopsimodhandlerinterface.h:31
pappso::OboPsiModTerm
Definition obopsimodterm.h:34
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition export-import-config.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
obopsimod.h