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pappso::cbor::psm::PsmSpecGlob Member List

This is the complete list of members for pappso::cbor::psm::PsmSpecGlob, including all inherited members.

CborScanMapBase | pappso::cbor::psm::PsmFileScanProcess | private
CborStreamReaderInterface() | pappso::cbor::CborStreamReaderInterface |
clearScanBuffer() | pappso::cbor::psm::PsmFileScanProcess | protected
close() override | pappso::cbor::psm::PsmFileScanProcessAndCopy | virtual
currentProteinRefListContainsDecoy() const | pappso::cbor::psm::PsmFileReaderBase | protected
currentProteinRefListContainsTarget() const | pappso::cbor::psm::PsmFileReaderBase | protected
delayProteinMapInMemory() | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
fastaFilesReady(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
filterMassSpectrum(pappso::MassSpectrum &mass_spectrum) const | pappso::cbor::psm::PsmSpecGlob |
getCurrentPsmPeptideSp() const | pappso::cbor::psm::PsmFileReaderBase | protected
getCurrentQualifiedMassSpectrumSPtr() const | pappso::cbor::psm::PsmFileReaderBase | protected
getExpectedString() | pappso::cbor::CborStreamReaderInterface | protected
getPrecursorMass(double mz_prec, uint charge) const | pappso::cbor::psm::PsmFileReaderBase | protected
informationsReady(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
initCborReader(QFile *pcborfile) | pappso::cbor::CborStreamReaderInterface | protected
initCborReader(QIODevice *pcborfile) | pappso::cbor::CborStreamReaderInterface | protected
logReady(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
m_bufferScanSize | pappso::cbor::psm::PsmFileScanProcess | protected
m_cborInformations | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborLog | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborParameterMap | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborScanId | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborScanList | pappso::cbor::psm::PsmFileScanProcess | protected
m_cborScanMs2 | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborScanPrecursor | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborScanProps | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborScanPsmEval | pappso::cbor::psm::PsmFileReaderBase | protected
m_cborScanPsmProps | pappso::cbor::psm::PsmFileReaderBase | protected
m_countScanProcessed | pappso::cbor::psm::PsmSpecGlob | protected
m_currentIdentificationFileList | pappso::cbor::psm::PsmFileReaderBase | protected
m_currentPeaklistFile | pappso::cbor::psm::PsmFileReaderBase | protected
m_currentPsmProforma | pappso::cbor::psm::PsmFileReaderBase | protected
m_currentPsmProteinRefList | pappso::cbor::psm::PsmFileReaderBase | protected
m_currentSampleName | pappso::cbor::psm::PsmFileReaderBase | protected
m_data | pappso::cbor::CborStreamReaderInterface | protected
m_decoyFastaFiles | pappso::cbor::psm::PsmFileReaderBase | protected
m_deisotope | pappso::cbor::psm::PsmSpecGlob | protected
m_expectedString | pappso::cbor::CborStreamReaderInterface | protected
m_fragmentTolerance | pappso::cbor::psm::PsmSpecGlob | protected
m_isProteinMatcherResult | pappso::cbor::psm::PsmSpecGlob | protected
m_minimumMz | pappso::cbor::psm::PsmSpecGlob | protected
m_nMostIntense | pappso::cbor::psm::PsmSpecGlob | protected
m_operation | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
m_proteinMap | pappso::cbor::psm::PsmFileReaderBase | protected
m_psmNewProteinMap | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
m_specglobParameters | pappso::cbor::psm::PsmSpecGlob | protected
m_targetFastaFiles | pappso::cbor::psm::PsmFileReaderBase | protected
mp_cborOutput | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
mp_copyCborOutput | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
mpa_bufferAfterProteinMap | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
mpa_bufferWriterAfterProteinMap | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected
mpa_cborReader | pappso::cbor::CborStreamReaderInterface | protected
newCborScanMap() override | pappso::cbor::psm::PsmSpecGlob | protected virtual
parameterMapReady(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmSpecGlob | protected virtual
processBufferScan(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileScanProcess | protected virtual
processBufferScanDone(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmSpecGlob | protected virtual
proteinMapReady(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
PsmFileReaderBase() | pappso::cbor::psm::PsmFileReaderBase |
PsmFileScanProcess(std::size_t buffer_scan_size) | pappso::cbor::psm::PsmFileScanProcess |
PsmFileScanProcessAndCopy(std::size_t buffer_scan_size, CborStreamWriter *cbor_output_p, const QString &operation) | pappso::cbor::psm::PsmFileScanProcessAndCopy |
psmReady(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
PsmSpecGlob(std::size_t buffer_scan_size, CborStreamWriter *cbor_output_p, const QJsonObject &parameters) | pappso::cbor::psm::PsmSpecGlob |
PsmSpecGlobScan | pappso::cbor::psm::PsmSpecGlob | private
readCbor(QFile *cborp, pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase |
readCbor(QIODevice *cborp, pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase |
readInformations(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
readLog(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
readParameterMap(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
readProteinMap(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
readPsm(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
readPsmFile(bool &is_ok) | pappso::cbor::psm::PsmFileReaderBase | protected
readPsmProteinRef(bool &is_ok) | pappso::cbor::psm::PsmFileReaderBase | protected
readRoot(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected
readSample(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
readScan(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcess | protected virtual
sampleFinished(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
sampleListFinished(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
sampleListStarted(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
sampleStarted(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcessAndCopy | protected virtual
scanFinished(pappso::UiMonitorInterface &monitor) override | pappso::cbor::psm::PsmFileScanProcess | protected virtual
scanStarted(pappso::UiMonitorInterface &monitor) | pappso::cbor::psm::PsmFileReaderBase | protected virtual
writePsmFile(CborStreamWriter &writer, const PsmFile &psm_file) | pappso::cbor::psm::PsmFileReaderBase | protected
writePsmFileList(CborStreamWriter &writer, const std::vector< PsmFile > &file_list) | pappso::cbor::psm::PsmFileReaderBase | protected
~CborStreamReaderInterface() | pappso::cbor::CborStreamReaderInterface | virtual
~PsmFileReaderBase() override | pappso::cbor::psm::PsmFileReaderBase | virtual
~PsmFileScanProcess() | pappso::cbor::psm::PsmFileScanProcess | virtual
~PsmFileScanProcessAndCopy() | pappso::cbor::psm::PsmFileScanProcessAndCopy | virtual
~PsmSpecGlob() | pappso::cbor::psm::PsmSpecGlob | virtual