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pappso::TimsFrame Member List

This is the complete list of members for pappso::TimsFrame, including all inherited members.

checkScanNum(std::size_t scanNum) const | pappso::TimsFrameBase |
combineScansInTofIndexIntensityMap(TimsDataFastMap &rawSpectrum, std::size_t scan_index_begin, std::size_t scan_index_end) const override | pappso::TimsFrame | virtual
combineScansInTofIndexIntensityMap(TimsDataFastMap &tof_index_intensity_map, std::size_t scan_index_begin, std::size_t scan_index_end, quint32 tof_index_begin, quint32 tof_index_end) const override | pappso::TimsFrame | virtual
combineScansToTraceWithDowngradedMzResolution(std::size_t mzindex_merge_window, std::size_t scanNumBegin, std::size_t scanNumEnd, quint32 &mz_minimum_index, quint32 &mz_maximum_index) const override | pappso::TimsFrame | virtual
combineScansToTraceWithDowngradedMzResolution2(std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, std::size_t mobility_scan_begin, std::size_t mobility_scan_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const override | pappso::TimsFrame | virtual
cumulateScan(std::size_t scanNum, TimsDataFastMap &accumulate_into) const | pappso::TimsFrame | protected virtual
cumulateScan2(std::size_t scanNum, TimsDataFastMap &accumulate_into, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const | pappso::TimsFrame | protected virtual
cumulateScanIntensities(std::size_t scanNum) const override | pappso::TimsFrame | virtual
cumulateScanRangeIntensities(std::size_t scanNumBegin, std::size_t scanNumEnd) const override | pappso::TimsFrame | virtual
cumulateScansToTrace(std::size_t scanIndexBegin, std::size_t scanIndexEnd) const override | pappso::TimsFrame | virtual
downgradeResolutionOfTofIndexIntensityPairList(std::size_t tof_index_merge_window, std::vector< TofIndexIntensityPair > &spectrum) const | pappso::TimsFrameBase | protected virtual
extractTimsXicListInRtRange(std::vector< XicCoordTims * >::iterator &itXicListbegin, std::vector< XicCoordTims * >::iterator &itXicListend, Enums::XicExtractMethod method) const | pappso::TimsFrame | protected
getDriftTimeInMilliseconds(std::size_t scan_index) const | pappso::TimsFrameBase |
getId() const | pappso::TimsFrameBase |
getIonMobilityTraceByTofIndexRange(std::size_t tof_index_begin, std::size_t tof_index_end, Enums::XicExtractMethod method, std::size_t scan_index_begin, std::size_t scan_index_end) const | pappso::TimsFrameBase | virtual
getMassSpectrumCstSPtr(std::size_t scan_index) const final | pappso::TimsFrameBase | virtual
getMassSpectrumSPtr(std::size_t scanNum) const override | pappso::TimsFrame | virtual
getMaximumRawMassIndex() const | pappso::TimsFrameBase | virtual
getMobilityScan(std::size_t scanNum, std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const override | pappso::TimsFrame | virtual
getMsLevel() const | pappso::TimsFrameBase |
getMzCalibrationInterfaceSPtr() const final | pappso::TimsFrameBase | virtual
getOneOverK0Transformation(std::size_t scan_index) const | pappso::TimsFrameBase |
getRawTraceSPtr(std::size_t scanNum) const | pappso::TimsFrame | protected virtual
getRawValuePairList(std::size_t scanNum, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const | pappso::TimsFrame | virtual
getRtInSeconds() const | pappso::TimsFrameBase |
getScanIndexFromOneOverK0(double one_over_k0) const | pappso::TimsFrameBase |
getScanIntensityList(std::size_t scanNum) const override | pappso::TimsFrame | virtual
getScanOffset(std::size_t scanNum) const | pappso::TimsFrame | private
getScanPeakCount(std::size_t scanIndex) const override | pappso::TimsFrame | virtual
getScanTofIndexList(std::size_t scanNum) const override | pappso::TimsFrame | virtual
getTotalNumberOfScans() const | pappso::TimsFrameBase | virtual
getTraceFromTofIndexIntensityMap(TimsDataFastMap &accumulated_scans) const | pappso::TimsFrameBase |
getVoltageTransformation(std::size_t scanNum) const | pappso::TimsFrameBase |
hasSameCalibrationData(const TimsFrameBase &other) const | pappso::TimsFrameBase | virtual
m_acqDurationInMilliseconds | pappso::TimsFrameBase | protected
m_binaryData | pappso::TimsFrame | protected
m_frameId | pappso::TimsFrameBase | protected
m_msMsType | pappso::TimsFrameBase | protected
m_rtInSeconds | pappso::TimsFrameBase | protected
m_scanCount | pappso::TimsFrameBase | protected
m_timsC6 | pappso::TimsFrameBase | protected
m_timsC7 | pappso::TimsFrameBase | protected
m_timsDvStart | pappso::TimsFrameBase | protected
m_timsNdelay | pappso::TimsFrameBase | protected
m_timsSlope | pappso::TimsFrameBase | protected
m_timsTtrans | pappso::TimsFrameBase | protected
m_timsVmax | pappso::TimsFrameBase | protected
m_timsVmin | pappso::TimsFrameBase | protected
msp_mzCalibration | pappso::TimsFrameBase | protected
setAcqDurationInMilliseconds(double acquisition_duration_ms) | pappso::TimsFrameBase |
setMsMsType(quint8 type) | pappso::TimsFrameBase |
setMzCalibration(double T1_frame, double T2_frame, double digitizerTimebase, double digitizerDelay, double C0, double C1, double C2, double C3, double C4, double T1_ref, double T2_ref, double dC1, double dC2) | pappso::TimsFrameBase |
setMzCalibrationInterfaceSPtr(MzCalibrationInterfaceSPtr mzCalibration) | pappso::TimsFrameBase |
setRtInSeconds(double time) | pappso::TimsFrameBase |
setTimsCalibration(int tims_model_type, double C0, double C1, double C2, double C3, double C4, double C5, double C6, double C7, double C8, double C9) | pappso::TimsFrameBase |
TimsDirectXicExtractor | pappso::TimsFrame | private
TimsFrame(std::size_t timsId, quint32 scanNum, char *p_bytes, std::size_t len) | pappso::TimsFrame |
TimsFrame(const TimsFrame &other) | pappso::TimsFrame |
TimsFrame(std::size_t timsId, quint32 scanNum) | pappso::TimsFrame | protected
TimsFrameBase(std::size_t frameId, quint32 scanCount) | pappso::TimsFrameBase |
TimsFrameBase(const TimsFrameBase &other) | pappso::TimsFrameBase |
unshufflePacket(const char *src) | pappso::TimsFrame | private
~TimsFrame() | pappso::TimsFrame | virtual
~TimsFrameBase() | pappso::TimsFrameBase | virtual