GMT-MUSIC-BMR(1p)

gmt music bmr

NAME
gmt music bmr - Calculate gene coverages and background mutation rates.

VERSION
This document describes gmt music bmr version 0.04 (2018-07-05 at 09:17:13)

SYNOPSIS
gmt music bmr ...

DESCRIPTION
These tools are part of the MuSiC suite.

SUB-COMMANDS

  GENERAL

calc-bmr
    Calculates mutation rates given per-gene coverage (from "music bmr calc-covg"), and a mutation list

calc-covg
    Uses calcRoiCovg.c to count covered bases per-gene for each given tumor-normal pair of BAMs.

calc-covg-helper
    Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair of BAMs.

calc-wig-covg
    Count covered bases per-gene for each given wiggle track format file.

LICENSE
Copyright (C) 2010-2011 Washington University in St. Louis.

It is released under the Lesser GNU Public License (LGPL) version 3. See the associated LICENSE file in this distribution.

AUTHORS
 Cyriac Kandoth, Ph.D.

SEE ALSO
genome-music-bmr-calc-covg(1), genome-music-bmr-calc-bmr(1), genome-music(1), genome(1)