# Package org.jmol.adapter.readers.cif

package org.jmol.adapter.readers.cif

Classes
Class
Description
BCIFReader
A very simple Binary CIF file reader extention of MMCifReader extends CifReader.
Cif2DataParser
Fully implemented 2016.12.1 see http://journals.iucr.org/j/issues/2016/01/00/aj5269/index.html Will deliver JSON versions of the data while file reading and Java List/Map structures when called by x = getProperty("cifInfo", filename) Validated using the test-data suite by John Bollinger (John.Bollinger@stjude.org) found at https://github.com/COMCIFS/cif_api
Cif2Reader
Preliminary Cif2 reader.
CifReader
A true line-free CIF file reader for CIF files.
MMCifReader
mmCIF files are recognized prior to class creation.
MMCifValidationParser
MMTFReader
JmolData RCSB MMTF (macromolecular transmission format) file reader see https://github.com/rcsb/mmtf/blob/master/spec.md Note added 2024.01.19 Jose Duarte 2:03 PM (email) to MMTF-Users From July 2024 the PDB file archive will not be offered in the compressed MMTF format anymore.
MSCifParser
MSRdr
generalized modulated structure reader class for CIF and Jana -- includes Fourier, Crenel, Sawtooth, Legendre; displacement, occupancy, and Uij -- handles up to 6 modulation wave vectors -- commensurate and incommensurate, including composites -- not handling _cell_commen_t_section_1
TopoCifParser
see https://github.com/COMCIFS/TopoCif Basic idea: We have TLinks, TNodes, and TAtoms TLinks each have two TNodes and may also be associated with bridging TAtom sets.