# Uses of Package
javajs.util

Packages that use javajs.util
Package
Description
com.sparshui.common
com.sparshui.server
javajs.api
javajs.img
javajs.util
jspecview.api
jspecview.app
jspecview.appletjs
jspecview.application
jspecview.common
jspecview.export
jspecview.java
jspecview.js2d
jspecview.source
jspecview.tree
org.jmol.adapter.readers.cif
org.jmol.adapter.readers.molxyz
org.jmol.adapter.readers.pdb
org.jmol.adapter.readers.pymol
org.jmol.adapter.readers.quantum
org.jmol.adapter.readers.simple
org.jmol.adapter.readers.spartan
org.jmol.adapter.readers.xml
org.jmol.adapter.readers.xtal
org.jmol.adapter.smarter
org.jmol.adapter.writers
org.jmol.api
org.jmol.atomdata
org.jmol.awt
org.jmol.awtjs.swing
org.jmol.awtjs2d
org.jmol.bspt
Provides Binary Space Partitioning Functionality to spacially separate data structures in n-dimensions
org.jmol.dssx
org.jmol.export
org.jmol.g3d
Provides a software implementation of complete 3D graphics engine for rendering molecules and associated shapes.
org.jmol.geodesic
org.jmol.inchi
org.jmol.io
org.jmol.jsv
org.jmol.jvxl.api
org.jmol.jvxl.calc
org.jmol.jvxl.data
org.jmol.jvxl.readers
org.jmol.minimize
org.jmol.minimize.forcefield
org.jmol.modelkit
org.jmol.modelset
org.jmol.modelsetbio
org.jmol.multitouch
org.jmol.navigate
org.jmol.popup
org.jmol.quantum
org.jmol.render
org.jmol.renderbio
org.jmol.renderspecial
org.jmol.script
org.jmol.scriptext
org.jmol.shape
org.jmol.shapebio
org.jmol.shapecgo
org.jmol.shapespecial
org.jmol.shapesurface
org.jmol.smiles
Jmol SMILES, Jmol SMARTS, Jmol bioSMILES, and Jmol bioSMARTS
org.jmol.symmetry
org.jmol.util
org.jmol.viewer
org.openscience.jmol.app.janocchio
org.openscience.jvxl.simplewriter

Classes in javajs.util used by com.sparshui.common
Class
Description
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by com.sparshui.server
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by javajs.api
Class
Description
OC
A generic output method.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by javajs.img
Class
Description
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by javajs.util
Class
Description
A4
A 4 element axis angle represented by single precision floating point x,y,z,angle components.
BC
byte converter
BinaryDocument
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
CifDataParser
A CIF 1.0 tokenizer class for dealing with quoted strings in CIF files.
DataReader
Just a simple abstract class to join a String reader and a String[] reader under the same BufferedReader umbrella.
Eigen
Eigenvalues and eigenvectors of a real matrix.
Encoding
JSONException
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M34
A base class for both M3 and M4 to conserve code size.
M4
A single precision floating point 4 by 4 matrix.
Matrix
streamlined and refined for Jmol by Bob Hanson from http://math.nist.gov/javanumerics/jama/ Jama = Java Matrix class.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
T3d
A generic 3 element tuple that is represented by double precision floating point x,y and z coordinates.
T3i
A 3-element tuple represented by signed integer x,y,z coordinates.
T4
A generic 4 element tuple that is represented by single precision floating point x,y,z and w coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
V3d
A 3 element vector that is represented by double precision floating point x,y,z coordinates.
Classes in javajs.util used by jspecview.api
Class
Description
Lst
created to remove ambiguities in add and remove
OC
A generic output method.
Classes in javajs.util used by jspecview.app
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by jspecview.appletjs
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by jspecview.application
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by jspecview.common
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
OC
A generic output method.
Classes in javajs.util used by jspecview.export
Class
Description
Lst
created to remove ambiguities in add and remove
OC
A generic output method.
Classes in javajs.util used by jspecview.java
Class
Description
Lst
created to remove ambiguities in add and remove
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by jspecview.js2d
Class
Description
Lst
created to remove ambiguities in add and remove
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by jspecview.source
Class
Description
Lst
created to remove ambiguities in add and remove
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
Classes in javajs.util used by jspecview.tree
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.adapter.readers.cif
Class
Description
CifDataParser
A CIF 1.0 tokenizer class for dealing with quoted strings in CIF files.
Lst
created to remove ambiguities in add and remove
M4
A single precision floating point 4 by 4 matrix.
Matrix
streamlined and refined for Jmol by Bob Hanson from http://math.nist.gov/javanumerics/jama/ Jama = Java Matrix class.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.adapter.readers.molxyz
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Classes in javajs.util used by org.jmol.adapter.readers.pdb
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.adapter.readers.pymol
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.adapter.readers.quantum
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.adapter.readers.simple
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.adapter.readers.spartan
Class
Description
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
Classes in javajs.util used by org.jmol.adapter.readers.xml
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
Classes in javajs.util used by org.jmol.adapter.readers.xtal
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.adapter.smarter
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
Matrix
streamlined and refined for Jmol by Bob Hanson from http://math.nist.gov/javanumerics/jama/ Jama = Java Matrix class.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.adapter.writers
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
OC
A generic output method.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.api
Class
Description
A4
A 4 element axis angle represented by single precision floating point x,y,z,angle components.
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
DataReader
Just a simple abstract class to join a String reader and a String[] reader under the same BufferedReader umbrella.
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M34
A base class for both M3 and M4 to conserve code size.
M4
A single precision floating point 4 by 4 matrix.
Matrix
streamlined and refined for Jmol by Bob Hanson from http://math.nist.gov/javanumerics/jama/ Jama = Java Matrix class.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.atomdata
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.awt
Class
Description
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.awtjs.swing
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
Classes in javajs.util used by org.jmol.awtjs2d
Class
Description
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.bspt
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.dssx
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.export
Class
Description
A4
A 4 element axis angle represented by single precision floating point x,y,z,angle components.
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.g3d
Class
Description
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.geodesic
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
M3
A single precision floating point 3 by 3 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.inchi
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Classes in javajs.util used by org.jmol.io
Class
Description
DataReader
Just a simple abstract class to join a String reader and a String[] reader under the same BufferedReader umbrella.
Classes in javajs.util used by org.jmol.jsv
Class
Description
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.jvxl.api
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.jvxl.calc
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.jvxl.data
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
T3i
A 3-element tuple represented by signed integer x,y,z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.jvxl.readers
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.minimize
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
V3d
A 3 element vector that is represented by double precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.minimize.forcefield
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Classes in javajs.util used by org.jmol.modelkit
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.modelset
Class
Description
A4
A 4 element axis angle represented by single precision floating point x,y,z,angle components.
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.modelsetbio
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.multitouch
Class
Description
Lst
created to remove ambiguities in add and remove
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.navigate
Class
Description
Lst
created to remove ambiguities in add and remove
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.popup
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
Classes in javajs.util used by org.jmol.quantum
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.render
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.renderbio
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.renderspecial
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.script
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M34
A base class for both M3 and M4 to conserve code size.
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.scriptext
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
Classes in javajs.util used by org.jmol.shape
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.shapebio
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.shapecgo
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.shapespecial
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.shapesurface
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M4
A single precision floating point 4 by 4 matrix.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.smiles
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
Classes in javajs.util used by org.jmol.symmetry
Class
Description
A4
A 4 element axis angle represented by single precision floating point x,y,z,angle components.
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M34
A base class for both M3 and M4 to conserve code size.
M4
A single precision floating point 4 by 4 matrix.
Matrix
streamlined and refined for Jmol by Bob Hanson from http://math.nist.gov/javanumerics/jama/ Jama = Java Matrix class.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.util
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
Matrix
streamlined and refined for Jmol by Bob Hanson from http://math.nist.gov/javanumerics/jama/ Jama = Java Matrix class.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.jmol.viewer
Class
Description
A4
A 4 element axis angle represented by single precision floating point x,y,z,angle components.
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Lst
created to remove ambiguities in add and remove
M3
A single precision floating point 3 by 3 matrix.
M4
A single precision floating point 4 by 4 matrix.
OC
A generic output method.
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
P3i
A 3 element point that is represented by signed integer x,y,z coordinates.
P4
A 4 element point that is represented by single precision floating point x,y,z,w coordinates.
Quat
SB
Interesting thing here is that JavaScript is 3x faster than Java in handling strings.
T3
A generic 3 element tuple that is represented by single precision floating point x,y and z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.
Classes in javajs.util used by org.openscience.jmol.app.janocchio
Class
Description
BS
a fast 32-bit BitSet optimized for Java2Script -- about 25 times faster than java.util.BitSet
Classes in javajs.util used by org.openscience.jvxl.simplewriter
Class
Description
Lst
created to remove ambiguities in add and remove
P3
A 3 element point that is represented by single precision floating point x,y,z coordinates.
V3
A 3-element vector that is represented by single precision floating point x,y,z coordinates.