# Package org.jmol.adapter.readers.simple

package org.jmol.adapter.readers.simple

Classes
Class
Description
AlchemyReader
TRIPOS simple Alchemy reader.
AmpacReader
A reader for AMPAC output.
CubeReader
Gaussian cube file format http://www.cup.uni-muenchen.de/oc/zipse/lv18099/orb_MOLDEN.html this is good because it is source code http://ftp.ccl.net/cca/software/SOURCES/C/scarecrow/gcube2plt.c http://www.nersc.gov/nusers/resources/software/apps/chemistry/gaussian/g98/00000430.htm distances are in Bohrs because we are reading Gaussian cube OUTPUT files not Gaussian cube INPUT files.
FAHReader
FoldingAtHome json reader.
FoldingXyzReader
This reader is for current.xyz files generated by Folding@Home project (see http://folding.stanford.edu) I have not found a precise description of the file format.
GhemicalMMReader
Reads Ghemical ( http://www.uku.fi/~thassine/ghemical) molecular mechanics (*.mm1gp) files.
HyperChemReader
Support for .hin, HyperChem's native file format.
InputReader
JmeReader
JSONReader
MopacArchiveReader
Mopac Archive reader -- presumes "zMatrix" is really Cartesians use FILTER "NOCENTER" to NOT center atoms in unit cell use CENTROID for complete molecules with centroids within unit cell use PACKED CENTROID for complete molecules with any atoms within unit cell
MopacReader
Reads Mopac 93, 6, 7, 2002, or 2009 output files
OrcaReader
Reads ORCA input and output files
TinkerReader
simple Tinker format requires Tinker:: prefix: load Tinker::mydata.xyz 1/2014 hansonr@stolaf.edu