Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Jmol
Upstream-Contact: http://www.jmol.org
Source: https://jmol.sourceforge.net/download/
Disclaimer: The recommended way to cite Jmol is:
 Jmol: an open-source Java viewer for chemical structures in 3D.
 http://www.jmol.org/ 
Comment: - This package was debianized on Sun, 28 May 2006 23:30:51 +0200
 by Steffen Moeller <steffen_moeller@gmx.de>.
 - Excluding docbook-xsl and jar files, which are dependencies. We use Debian
 system libs instead.
 -About JSmol: Peter Ertl <peter.ertl@gmail.com> to
 Ximin Luo <infinity0@pwned.gg>:
 "The underlying Java source is unfortunately due to various legacy legal
 reasons not available."
 Can't figure out how to generate in a DFSG way, JSmol disabled for now.
 - About jcfl-*-source and HPTouchSmart:
 Can't distribute in Debian (no source code, or license is not free)
 - JmolColorPocker.js contains very-long-lines.
 - translations.tgz is a generated file
 - removing cruft (among other, obscure JS code) in j2s and site-resources
Files-Excluded:
    jars
    **/*.jar
    */appletweb
    */jsmol.zip
    */src/com/sparshui/cpp/HPTouchSmart/*
    */jmol.mac
    */src/org/openscience/jmol/app/webexport/html/JmolColorPicker.js
    j2s
    site-resources
    site-resources-zip

Files: *
Copyright: 1998-2023 The Jmol Development Team
License: LGPL-2.1+

Files: src/javajs/img/GifEncoder.java
Copyright: 1996-1998 Jef Poskanzer <jef@mail.acme.com>
           2000-2005 The Jmol Development Team
License: BSD-2-clause and LGPL-2.1+

Files: src/javajs/img/Jpg64Encoder.java
       src/javajs/img/JpgEncoder.java
       src/javajs/util/Base64.java
Copyright: 1998 James R. Weeks and BioElectroMech.
License: BSD-2-clause

Files: src/javajs/img/PpmEncoder.java
Copyright: 1996-1998 Jef Poskanzer <jef@mail.acme.com>
License: BSD-2-clause

Files: src/javajs/util/A4.java
       src/javajs/util/M3.java
       src/javajs/util/M4.java
       src/javajs/util/P3.java
       src/javajs/util/P3i.java
       src/javajs/util/P4.java
       src/javajs/util/T3.java
       src/javajs/util/T3d.java
       src/javajs/util/T3i.java
       src/javajs/util/T4.java
       src/javajs/util/V3.java
       src/javajs/util/V3d.java
Copyright: 1997-1999 Kenji Hiranabe, Eiwa System Management, Inc.
License: custom
 Permission to use, copy, modify, distribute and sell this software
 and its documentation for any purpose is hereby granted without fee,
 provided that the above copyright notice appear in all copies and
 that both that copyright notice and this permission notice appear
 in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
 makes no representations about the suitability of this software for any
 purpose.  It is provided "AS IS" with NO WARRANTY.

Files: src/javajs/util/BS.java
Copyright: 1995-2007 Sun Microsystems, Inc.
License: GPL-2 with Classpath exception

Files: src/javajs/util/BinaryDocument.java
       src/javajs/util/CompoundDocument.java
       src/javajs/util/Eigen.java
       src/org/jmol/adapter/*
       src/org/jmol/bspt/*
       src/org/jmol/export/Export3D.java
       src/org/jmol/g3d/*
       src/org/jmol/i18n/*
       src/org/jmol/modelsetbio/AlphaMonomer.java
       src/org/jmol/modelsetbio/CarbohydrateMonomer.java
       src/org/jmol/render/AxesRenderer.java
       src/org/jmol/render/BbcageRenderer.java
       src/org/jmol/render/CageRenderer.java
       src/org/jmol/render/FontLineShapeRenderer.java
       src/org/jmol/render/UccageRenderer.java
       src/org/jmol/renderbio/CartoonRenderer.java
       src/org/jmol/renderbio/NucleicRenderer.java
       src/org/jmol/renderbio/RibbonsRenderer.java
       src/org/jmol/renderbio/StrandsRenderer.java
       src/org/jmol/rendercgo/*
       src/org/jmol/renderspecial/DrawRenderer.java
       src/org/jmol/rendersurface/Plot3DRenderer.java
       src/org/jmol/rendersurface/PmeshRenderer.java
       src/org/jmol/script/ScriptEval.java
       src/org/jmol/script/ScriptMathProcessor.java
       src/org/jmol/shape/Axes.java
       src/org/jmol/shape/Bbcage.java
       src/org/jmol/shape/Uccage.java
       src/org/jmol/shape/Mesh.java
       src/org/jmol/shapebio/Strands.java
       src/org/jmol/shapecgo/*
       src/org/jmol/shapespecial/DrawMesh.java
       src/org/jmol/shapesurface/*
       src/org/jmol/symmetry/*
       src/org/jmol/util/C.java
       src/org/jmol/util/Elements.java
       src/org/jmol/util/Font.java
       src/org/jmol/util/Geodesic.java
       src/org/jmol/util/Int2IntHash.java
       src/org/jmol/util/Normix.java
       src/org/jmol/util/Point3fi.java
       src/org/jmol/util/Rgb16.java
       src/org/jmol/util/SimpleUnitCell.java
       src/org/jmol/util/Tensor.java
       src/org/jmol/viewer/ChimeMessenger.java
       src/org/jmol/viewer/ColorManager.java
       src/org/jmol/viewer/JC.java
       src/org/jmol/viewer/ModelManager.java
       src/org/jmol/viewer/Viewer.java
       src/org/jmol/viewer/DataManager.java
       src/org/jmol/viewer/FileManager.java
       src/org/jmol/viewer/SelectionManager.java
       src/org/jmol/viewer/ShapeManager.java
       src/org/jmol/quantum/*
Copyright: 2002-2006 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+

Files: src/jspecview/*
       src/org/jmol/awt/AwtG2D.java
       src/org/jmol/awtjs2d/JsG2D.java
Copyright: 2002-2016 The University of the West Indies
License: LGPL-2.1+

Files: src/jspecview/application/ApplicationMenu.java
       src/jspecview/application/JSpecView.java
       src/jspecview/application/MainFrame.java
Copyright: 2002-2012 The JSpecView Development Team
License: LGPL-2.1+

Files: src/org/jmol/jvxl/*
       src/org/openscience/*
Copyright: 2007 Miguel, Bob, Jmol Development
License: LGPL-2.1+

Files: src/jspecview/common/JSVZipUtil.java
       src/jspecview/common/PDFWriter.java
       src/jspecview/common/JSVersion.java
       src/org/jmol/g3d/Pixelator.java
       src/org/jmol/g3d/PixelatorScreened.java
       src/org/jmol/g3d/PixelatorShaded.java
       src/org/jmol/g3d/PixelatorT.java
       src/org/jmol/i18n/Language.java
       src/org/jmol/jvxl/readers/XmlReader.java
       src/org/jmol/quantum/QMAtom.java
       src/org/jmol/quantum/QS.java
       src/org/jmol/quantum/SlaterData.java
Copyright: 2000-2017 The Jmol Development Team
License: LGPL-2.1+

Files: src/jspecview/java/*
       src/jspecview/js2d/*
       src/jspecview/popup/*
       src/org/jmol/shapecgo/CGO.java
       src/org/jmol/shapesurface/Plot3D.java
       src/org/jmol/shapesurface/Pmesh.java
       src/org/jmol/symmetry/CIPChirality.java
       src/org/jmol/symmetry/SymmetryDesc.java
       src/org/jmol/symmetry/SymmetryInfo.java
       src/org/openscience/jmol/*
       src/org/openscience/jvxl/Jvxl.java
       src/org/openscience/jvxl/simplewriter/ASimpleJvxlWriter.java
Copyright: 2000-2017 The Jmol Development Team
License: LGPL-2.1+

Files: src/jspecview/java/AwtDialogFileFilter.java
       src/jspecview/java/AwtG2D.java
       src/jspecview/java/AwtPanel.java
       src/jspecview/java/AwtPrintDialog.java
       src/jspecview/js2d/JsG2D.java
       src/jspecview/js2d/JsPanel.java
Copyright: 2002-2016 The University of the West Indies
License: LGPL-2.1+

Files: src/org/apache/*
Copyright: Apache Software Foundation
License: Apache-2.0

Files: src/org/jmol/adapter/readers/xml/XmlMolproReader.java
Copyright: 2005 Peter Knowles
           2003-2005 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+

Files: src/org/jmol/adapter/readers/xtal/AimsReader.java
Copyright: 2011 Joerg Meyer, TU Muenchen
           2009 Joerg Meyer, FHI Berlin
           2003-2005 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+

Files: src/org/jmol/adapter/readers/xtal/CrystalReader.java
       src/org/jmol/adapter/readers/xtal/VaspChgcarReader.java
       src/org/jmol/adapter/readers/xtal/VaspOutcarReader.java
Copyright: 2009 Piero Canepa, University of Kent, UK
           2003-2005 Miguel, Jmol Development, www.jmol.org
License: LGPL-2.1+

Files: src/org/jmol/atomdata/*
Copyright: 2007 Miguel, Bob, Jmol Development
License: LGPL-2.1+

Files: src/org/jmol/quantum/NMRNoeMatrix.java
       src/org/openscience/jmol/app/janocchio/*
Copyright: 2007 Eli Lilly and Co.
           2002-2006 The Jmol Development Team
License: LGPL-2.1+

Files: src/org/openscience/jmol/app/janocchio/NMR_JmolPanel.java
Copyright: 2000-2017 The Jmol Development Team
License: LGPL-2.1+

Files: src/org/molecularplayground/*
Copyright: 2011 University of Massachusetts
Comment:
 We have asked the original authors to clarify the license.
 https://github.com/molecular-playground/Presenter/issues/1
License: LGPL-2.1+

Files: src/org/openscience/jmol/app/webexport/html/*
Copyright: 2000-2017 The Jmol Development Team
License: CC-BY-SA-3.0

Files: src/org/jmol/minimize/forcefield/data/UFF.txt
Copyright: 2008 The Jmol Development Team
           2008 Bob Hanson <hansonr@stolaf.edu>
           2007-2008 Geoffrey R. Hutchison
           2007-2008 Tim Vandermeersch
Comment: Original source from
 https://github.com/openbabel/openbabel, unknown which exact commit
License: GPL-2

Files: src/org/jmol/minimize/forcefield/data/mmff94.par.txt
       src/org/jmol/minimize/forcefield/mmff/validate/MMFF94SYMB.PAR
       src/org/jmol/minimize/forcefield/mmff/validate/*.mol2
Copyright: 1994-1996 Merck and Co., Inc.
Comment: Original source from
 ftp://ftp.wiley.com/public/journals/jcc/suppmat/17/490/MMFF-I_AppendixA.html
 ftp://ftp.wiley.com/public/journals/jcc/suppmat/17/490/MMFF-I_AppendixB.ascii
 http://server.ccl.net/cca/data/MMFF94/
License: scientific-data-merck
 Original authors could not be reached at the advertised email addresses.
  Tom Halgren <halgren@merck.com>, <halgren@schrodinger.com>
  Simon Kearsley <skk@merck.com>
 The data is freely available at the above web/ftp addresses, assume that
 distribution is fine. In the worst case, we can replace our copies with
 scripts that download them at runtime.

Files: src/org/jmol/translation/*
Copyright: 1998-2012 The Jmol Development Team
           2008-2012 Rosetta Contributors (partial)
           2008-2012 Canonical Ltd (partial)
License: LGPL-2.1+

Files: debian/*
Copyright: 2016 Ximin Luo <infinity0@debian.org>
           2010-2016 The debichem team <debichem-devel@lists.alioth.debian.org>
           2006 Steffen Moeller <steffen_moeller@gmx.de>
           2004-2005 Daniel Leidert <daniel.leidert@wgdd.de>
           2021-2024 Pierre Gruet <pgt@debian.org>
License: GPL-2+

Files: debian/net.sourceforge.jmol.jmol.metainfo.xml
Copyright: 2022-2024 Pierre Gruet <pgt@debian.org>
License: CC-BY-4.0

License: BSD-2-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
 1. Redistributions of source code must retain the above copyright notice,
    this list of conditions, all files included with the source code, and the
    following disclaimer.  
 2. Redistributions in binary form must reproduce the above copyright notice,
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License: GPL-2
 On Debian systems the complete text of the GNU General Public License
 version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.

License: GPL-2+
 On Debian systems the complete text of the GNU General Public License
 version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.

License: GPL-2 with Classpath exception
 On Debian systems the complete text of the GNU General Public License
 version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.
 The "Classpath" exception is as follows. For context, first note that:
 .
 Linking this library statically or dynamically with other modules is making a
 combined work based on this library. Thus, the terms and conditions of the GNU
 General Public License cover the whole combination.
 .
 As a special exception, the copyright holders of this library give you
 permission to link this library with independent modules to produce an
 executable, regardless of the license terms of these independent modules, and
 to copy and distribute the resulting executable under terms of your choice,
 provided that you also meet, for each linked independent module, the terms and
 conditions of the license of that module. An independent module is a module
 which is not derived from or based on this library. If you modify this
 library, you may extend this exception to your version of the library, but you
 are not obliged to do so. If you do not wish to do so, delete this exception
 statement from your version.

License: LGPL-2.1+
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU Lesser General Public License as published by
 the Free Software Foundation; either version 2.1, or (at your option)
 any later version.
 .
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU Lesser General Public License for more details.
 .
 You should have received a copy of the GNU Lesser General Public License along
 with this program; if not, write to the Free Software Foundation,
 Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
 .
 On Debian systems the complete text of the GNU Lesser General Public
 License 2.1 can be found in the file `/usr/share/common-licenses/LGPL-2.1'.

License: Apache-2.0
 On Debian systems the full text of the Apache-2.0 license can be found in
 /usr/share/common-licenses/Apache-2.0.

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