# Hierarchy For All Packages

Package Hierarchies:

- jgromacs.analysis,
- jgromacs.data,
- jgromacs.db,
- jgromacs.io,
- jgromacs.ui

## Class Hierarchy

- java.lang.Object
  - jgromacs.data.Alignment (implements java.lang.Cloneable)
  - jgromacs.data.Angle (implements java.lang.Cloneable)
  - jgromacs.analysis.Angles
  - jgromacs.ui.Application
    - jgromacs.ui.TemplateApplication
  - jgromacs.data.Atom (implements java.lang.Cloneable)
  - jgromacs.db.AtomType (implements java.lang.Cloneable)
  - jgromacs.analysis.Distances
  - jgromacs.analysis.Dynamics
  - jgromacs.data.FrameIndexSet (implements java.lang.Cloneable)
  - jgromacs.analysis.GNM
  - jgromacs.data.IndexSet (implements java.lang.Cloneable)
  - jgromacs.data.IndexSetList (implements java.lang.Cloneable)
  - jgromacs.io.IOData
  - jgromacs.io.IOMath
  - jgromacs.data.Point3D (implements java.lang.Cloneable)
  - jgromacs.data.PointList (implements java.lang.Cloneable)
  - jgromacs.data.Residue (implements java.lang.Cloneable)
  - jgromacs.db.ResidueType (implements java.lang.Cloneable)
  - jgromacs.data.Sequence (implements java.lang.Cloneable)
  - jgromacs.data.SequencePosition (implements java.lang.Cloneable)
  - jgromacs.analysis.Similarity
  - jgromacs.data.Structure (implements java.lang.Cloneable)
  - jgromacs.analysis.Superposition
  - jgromacs.data.Trajectory (implements java.lang.Cloneable)