# Uses of Interface
jebl.evolution.align.scores.ScoreMatrix

Packages that use ScoreMatrix
Package
Description
jebl.evolution.align.scores

## Uses of ScoreMatrix in jebl.evolution.align.scores

Classes in jebl.evolution.align.scores that implement ScoreMatrix
Modifier and Type
Class
Description
`class`
`AminoAcidScores`
`class`
`Blosum45`
`class`
`Blosum50`
`class`
`Blosum55`
`class`
`Blosum60`
`class`
`Blosum62`
`class`
`Blosum65`
`class`
`Blosum70`
`class`
`Blosum75`
`class`
`Blosum80`
`class`
`Blosum85`
`class`
`Blosum90`
`class`
`Hamming`
`class`
`JukesCantor`
Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.
`class`
`NucleotideScores`
`class`
`Pam100`
`class`
`Pam110`
`class`
`Pam120`
`class`
`Pam130`
`class`
`Pam140`
`class`
`Pam150`
`class`
`Pam160`
`class`
`Pam170`
`class`
`Pam180`
`class`
`Pam190`
`class`
`Pam200`
`class`
`Pam210`
`class`
`Pam220`
`class`
`Pam230`
`class`
`Pam240`
`class`
`Pam250`
`class`
`Scores`
Base class for all score matrices in the package.
`class`
`SubstScoreMatrix`
Methods in jebl.evolution.align.scores with parameters of type ScoreMatrix
Modifier and Type
Method
Description
`static Scores`
Scores.`forMatrix(ScoreMatrix scoreMatrix)`