# Uses of Package
jebl.evolution.sequences

Packages that use jebl.evolution.sequences
Package
Description
jebl.evolution.align
Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.aligners
jebl.evolution.alignments
jebl.evolution.io
jebl.evolution.parsimony
jebl.evolution.sequences
jebl.evolution.substmodel

Classes in jebl.evolution.sequences used by jebl.evolution.align
Class
Description
Sequence
A biomolecular sequence.
Classes in jebl.evolution.sequences used by jebl.evolution.aligners
Class
Description
Sequence
A biomolecular sequence.
Classes in jebl.evolution.sequences used by jebl.evolution.alignments
Class
Description
Sequence
A biomolecular sequence.
Sequences
A set of sequence objects.
SequenceType
Interface for sequences data types.
State
Classes in jebl.evolution.sequences used by jebl.evolution.io
Class
Description
Sequence
A biomolecular sequence.
SequenceType
Interface for sequences data types.
Classes in jebl.evolution.sequences used by jebl.evolution.parsimony
Class
Description
State
Classes in jebl.evolution.sequences used by jebl.evolution.sequences
Class
Description
AminoAcidState
CodonState
As of 2007-07-30, instances of this class are only constructed for non-ambigous nucleotide triplets - see `Codons`.
FilteredSequence
GeneticCode
A set of standard genetic codes.
NucleotideState
Sequence
A biomolecular sequence.
SequenceType
Interface for sequences data types.
State
StateClassification
Classes in jebl.evolution.sequences used by jebl.evolution.substmodel
Class
Description
SequenceType
Interface for sequences data types.