# Uses of Class
jebl.evolution.distances.BasicDistanceMatrix

Packages that use BasicDistanceMatrix
Package
Description
jebl.evolution.align
Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.distances

## Uses of BasicDistanceMatrix in jebl.evolution.align

Subclasses of BasicDistanceMatrix in jebl.evolution.align
Modifier and Type
Class
Description
`class`
`SequenceAlignmentsDistanceMatrix`
Builds a distance matrix by performing a series of pairwise alignments between the specified sequences (unlike the methods in jebl.evolution.distances, which extract the pairwise distances from a multiple sequence alignment).

## Uses of BasicDistanceMatrix in jebl.evolution.distances

Subclasses of BasicDistanceMatrix in jebl.evolution.distances
Modifier and Type
Class
Description
`class`
`F84DistanceMatrix`
`class`
`HKYDistanceMatrix`
Compute HKY corrected distance matrix
`class`
`JukesCantorDistanceMatrix`
Compute jukes-cantor corrected distance matrix for a set of aligned sequences.
`class`
`TamuraNeiDistanceMatrix`
Date: 22/01/2006 Time: 17:28:59