# Uses of Class
jebl.evolution.align.AlignmentTreeBuilderFactory.Result

Packages that use AlignmentTreeBuilderFactory.Result
Package
Description
jebl.evolution.align
Provides classes and interfaces for pairwise alignment of two sequences.

## Uses of AlignmentTreeBuilderFactory.Result in jebl.evolution.align

Methods in jebl.evolution.align that return AlignmentTreeBuilderFactory.Result
Modifier and Type
Method
Description
`static AlignmentTreeBuilderFactory.Result`
AlignmentTreeBuilderFactory.`build(List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)`
`static AlignmentTreeBuilderFactory.Result`
AlignmentTreeBuilderFactory.`build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener)`
Will use model F84 for nucleotides and Jukes-Cantor for amino acid
`static AlignmentTreeBuilderFactory.Result`
AlignmentTreeBuilderFactory.`build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)`
`static AlignmentTreeBuilderFactory.Result`
AlignmentTreeBuilderFactory.`build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)`
`static AlignmentTreeBuilderFactory.Result`
AlignmentTreeBuilderFactory.`build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)`