# Uses of Package
jebl.evolution.trees

Packages that use jebl.evolution.trees
Package
Description
jebl.evolution.align
Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.coalescent
jebl.evolution.io
jebl.evolution.parsimony
jebl.evolution.treemetrics
jebl.evolution.trees
jebl.evolution.treesimulation

Classes in jebl.evolution.trees used by jebl.evolution.align
Class
Description
RootedTree
A tree with a root (node with maximum height).
Tree
A rooted or unrooted tree.
TreeBuilderFactory.DistanceModel
Supported pairwise distance methods
TreeBuilderFactory.Method
Supported methods for tree building
Classes in jebl.evolution.trees used by jebl.evolution.coalescent
Class
Description
RootedTree
A tree with a root (node with maximum height).
Classes in jebl.evolution.trees used by jebl.evolution.io
Class
Description
Tree
A rooted or unrooted tree.
Classes in jebl.evolution.trees used by jebl.evolution.parsimony
Class
Description
Tree
A rooted or unrooted tree.
Classes in jebl.evolution.trees used by jebl.evolution.treemetrics
Class
Description
RootedTree
A tree with a root (node with maximum height).
Classes in jebl.evolution.trees used by jebl.evolution.trees
Class
Description
AbstractRootedTree
CladeSystem
Stores a set of unique clades for a tree
ClusteringTreeBuilder
An abstract base class for clustering algorithms from pairwise distances
ConsensusTreeBuilder
A `TreeBuilder` that builds a consensus tree for a set of trees on identical leaf sets.
ConsensusTreeBuilder.Method
Supported consensus methods.
FilteredRootedTree
RootedTree
A tree with a root (node with maximum height).
SortedRootedTree.BranchOrdering
SplitSystem
data structure for a set of splits
TransformedRootedTree.Transform
Tree
A rooted or unrooted tree.
TreeBiPartitionInfo
Work in progress
TreeBiPartitionInfo.DistanceNorm
TreeBuilder
TreeBuilderFactory.ConsensusMethod
Supported consensus methods.
TreeBuilderFactory.DistanceModel
Supported pairwise distance methods
TreeBuilderFactory.Method
Supported methods for tree building
TreeChangeEvent
Represents a change to a tree.
TreeSelectionChangeEvent
Represents a change to the selected nodes in a tree.
Classes in jebl.evolution.trees used by jebl.evolution.treesimulation
Class
Description
RootedTree
A tree with a root (node with maximum height).