# Package jebl.evolution.align.scores

package jebl.evolution.align.scores

Related Packages
Package
Description
jebl.evolution.align
Provides classes and interfaces for pairwise alignment of two sequences.
Class
Description
AminoAcidScores
Blosum45
Blosum50
Blosum55
Blosum60
Blosum62
Blosum65
Blosum70
Blosum75
Blosum80
Blosum85
Blosum90
Hamming
JukesCantor
Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.
NucleotideScores
Pam100
Pam110
Pam120
Pam130
Pam140
Pam150
Pam160
Pam170
Pam180
Pam190
Pam200
Pam210
Pam220
Pam230
Pam240
Pam250
ScoreMatrix
Scores
Base class for all score matrices in the package.
ScoresFactory
SubstScoreMatrix