# Package jebl.evolution.substmodel

package jebl.evolution.substmodel

Class
Description
AbstractRateMatrix
abstract base class for all rate matrices
AminoAcidModel
base class of rate matrices for amino acids
MatrixExponential
compute matrix exponential and, subsequently, transition probabilities for a given rate matrix
RateMatrix
abstract base class for all rate matrices
WAG
WAG model of amino acid evolution (S.