# Package jebl.evolution.coalescent

package jebl.evolution.coalescent

Class
Description
CataclysmicDemographic
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
Coalescent
A likelihood function for the coalescent.
ConstantPopulation
This class models coalescent intervals for a constant population (parameter: N0=present-day population size).
ConstExponential
This class models exponential growth from an initial population size.
ConstLogistic
This class models logistic growth from an initial population size.
DemographicFunction
This interface provides methods that describe a demographic function.
DemographicFunction.Utils
EmpiricalDemographicFunction
Expansion
This class models exponential growth from an initial ancestral population size.
ExponentialGrowth
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
ExponentialLogistic
This class models logistic growth from an initial exponential phase.
IntervalList
An interface for a set of coalescent intevals.
IntervalList.IntervalType
IntervalList.Utils
Intervals
A concrete class for a set of coalescent intevals.
LogisticGrowth
This class models logistic growth.