allele_functions.h
#include<string>
#include<vector>
#ifndef allele_functions
#define allele_functions
struct allele{
std::string nuc;
uint32_t depth;
uint32_t reverse;
uint8_t mean_qual;
uint32_t beg;
uint32_t end;
float tmp_mean_qual;
bool operator < (const allele& a) const{
return (nuc.compare(a.nuc) > 0) ? true : false;
}
bool operator == (const allele& a) const{
return (nuc.compare(a.nuc) == 0) ? true : false;
}
};
int check_allele_exists(std::string n, std::vector<allele> ad);
std::vector<allele> update_allele_depth(char ref,std::string bases, std::string qualities, uint8_t min_qual);
void print_allele_depths(std::vector<allele> ad);
int find_ref_in_allele(std::vector<allele> ad, char ref);
char gt2iupac(char a, char b);
#endif
allele
Definition: allele_functions.h:7