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IsoSpec::FixedEnvelope Member List

This is the complete list of members for IsoSpec::FixedEnvelope, including all inherited members.

_confs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
_confs_no (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
_masses (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
_probs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
AbyssalWassersteinDistanceGrad (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | friend
addConfILG(const GenType &generator) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
allDim (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
allDimSizeofInt (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
bin(double bin_width=1.0, double middle=0.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | static
Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
conf(size_t i) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
confs() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
confs_no() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
current_size (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
empiric_average_mass() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
empiric_stddev() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
empiric_variance() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
FixedEnvelope() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
FixedEnvelope(const FixedEnvelope &other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
FixedEnvelope(FixedEnvelope &&other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline static
get_total_prob() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
getAllDim() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | static
LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | static
mass(size_t i) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
masses() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
normalize() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
operator*(const FixedEnvelope &other) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
operator+(const FixedEnvelope &other) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
OrientedWassersteinDistance(FixedEnvelope &other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
prob(size_t i) const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
probs() const (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
reallocate_memory(size_t new_size) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
release_confs() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
release_everything() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
release_masses() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
release_probs() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline
resample(size_t ionic_current, double beta_bias=1.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
scale(double factor) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
shift_mass(double shift) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
slow_reallocate_memory(size_t new_size) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
sort_by_mass() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
sort_by_prob() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
sorted_by_mass (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
sorted_by_prob (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
store_conf(const T &generator) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline protected
store_conf(double _mass, double _prob) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline protected
swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline protected
tconfs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
threshold_init(Iso &&iso, double threshold, bool absolute) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
tmasses (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
total_prob (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
total_prob_init(Iso &&iso, double target_prob, bool trim) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
tprobs (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | protected
WassersteinDistance(FixedEnvelope &other) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope |
~FixedEnvelope() (defined in IsoSpec::FixedEnvelope) | IsoSpec::FixedEnvelope | inline virtual