Module ij

# Package ij.plugin

package ij.plugin

Related Packages
Package
Description
ij
ij.plugin.filter
ij.plugin.frame
ij.plugin.tool
Class
Description
AboutBox
This plugin implements the Help/About ImageJ command by opening about.jpg in ij.jar, scaling it 600% and adding text to an overlay.
Animator
This plugin animates stacks.
AppearanceOptions
This plugin implements the Edit/Options/Appearance command.
ArrowToolOptions
This plugin implements the Edit/Options/Arrow Tool command.
AVI_Reader
ImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 invalid input: '&' 16 bit grayscale - uncompressed 24 invalid input: '&' 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 and 4:2:0 compressed formats (i.e., formats with full luminance resolution, but reduced chroma resolution - png or jpeg-encoded individual frames.
BatchConverter
This plugin implements the File/ /Convert command, which converts the images in a folder to a specified format.
BatchMeasure
This plugin implements the File/Batch/Measure command, which measures all the images in a user-specified folder.
BatchProcessor
This plugin implements the File/Batch/Macro and File/Batch/Virtual Stack commands.
Benchmark
Implements the Plugins/Utilities/Run Benchmark command.
Binner
This plugin implements the Image/Transform/Bin command.
BMP_Reader
This plugin reads BMP files.
BMP_Writer
Implements the File/Save As/BMP command.
BrowserLauncher
This plugin implements the File/Import/URL command and the commands in the Help menu that open web pages.
CalibrationBar
This plugin implements the Analyze/Tools/Calibration Bar command.
CanvasResizer
This plugin implements the Image/Adjust/Canvas Size command.
ChannelArranger
This plugin implements the Image/Colors/Arrange Channels command, which allows the user to change the order of channels.
ChannelSplitter
This plugin implements the Image/Color/Split Channels command.
CircularRoiMaker
This class implements the Process/FFT/Make Circular Selection command.
ClassChecker
Checks for duplicate class and JAR files in the plugins folders.
Clipboard
Copies/pastes images to/from the system clipboard.
Colors
This plugin implements most of the Edit/Options/Colors command.
CommandFinder
CommandLister
This class is used by the Plugins/Shortcuts/List Shortcuts command to display a list keyboard shortcuts.
Commands
Runs miscellaneous File and Window menu commands.
Compiler
Compiles and runs plugins using the javac compiler.
CompositeConverter
This plugin implements the Image/Color/Make Composite command.
Concatenator
This plugin, which concatenates two or more images or stacks, implements the Image/Stacks/Tools/Concatenate command.
ContrastEnhancer
Implements ImageJ's Process/Enhance Contrast command.
ControlPanel
ControlPanel.
Converter
Implements the conversion commands in the Image/Type submenu.
Coordinates
The plugin implements the Image/Adjust/Coordinates command.
DICOM
This plugin decodes DICOM files.
Distribution
This plugin implements the Analyze/Distribution command.
DragAndDrop
This class opens images, roi's, luts and text files dragged and dropped on the "ImageJ" window.
Duplicator
This plugin implements the Image/Duplicate command.
EventListener
This plugin implements the Plugins/Utilities/Monitor Events command.
FFT
This class implements the FFT, Inverse FFT and Redisplay Power Spectrum commands in the Process/FFT submenu.
FFTMath
The class implements the Process/FFT/Math command.
FileInfoVirtualStack
This plugin opens a multi-page TIFF file, or a set of raw images, as a virtual stack.
Filters3D
FITS_Reader
Opens and displays FITS images.
FITS_Writer
This plugin saves a 16 or 32 bit image in FITS format.
FolderOpener
Implements the File/Import/Image Sequence command, which opens a folder of images as a stack.
GaussianBlur3D
GelAnalyzer
This plugin generates gel profile plots that can be analyzed using the wand tool.
GIF_Reader
This plugin opens GIFs and Animated GIFs.
GifWriter
Saves the active image in GIF format, or as an animated GIF if the image is a stack.
Grid
This class implements the Analyze/Tools/Grid command.
GroupedZProjector
Implements the Image/Stacks/Tools/Grouped Z Project command.
Histogram
This plugin implements the Analyze/Histogram command.
Hotkeys
Implements the Plugins/Hotkeys/Create Shortcut and Remove commands.
HyperStackConverter
Implements the "Stack to HyperStack", "RGB to HyperStack" and "HyperStack to Stack" commands.
HyperStackMaker
This plugin implements the File/New/Hyperstack command.
HyperStackReducer
Implements the Image/HyperStacks/Reduce Dimensionality command.
ImageCalculator
This plugin implements the Process/Image Calculator command.
ImageInfo
This plugin implements the Image/Show Info command.
ImageJ_Updater
This plugin implements the Help/Update ImageJ command.
ImagesToStack
Implements the Image/Stacks/Images to Stack" command.
JavaProperties
Displays the Java system properties in a text window.
JavaScriptEvaluator
Implements the text editor's Macros/Run command, and the IJ.runMacroFile() method, when the file name ends with ".js".
JpegWriter
The File/Save As/Jpeg command (FileSaver.saveAsJpeg() method) uses this plugin to save images in JPEG format.
ListVirtualStack
This plugin opens images specified by list of file paths as a virtual stack.
LUT_Editor
LutLoader
Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
Macro_Runner
This class runs macros and scripts installed in the Plugins menu as well as macros and scripts opened using the Plugins/Macros/Run command.
MacroInstaller
This plugin implements the Plugins/Macros/Install Macros command.
MeasurementsWriter
Saves a table as a csv or tab-delimited text file.
Memory
This plugin implements the Edit/Options/Memory command.
MontageMaker
Implements the Image/Stacks/Make Montage command.
NewPlugin
This class creates a new macro or the Java source for a new plugin.
NextImageOpener
Options
This plugin implements most of the commands in the Edit/Options sub-menu.
Orthogonal_Views
This plugin projects dynamically orthogonal XZ and YZ views of a stack.
OverlayCommands
This plugin implements the commands in the Image/Overlay menu.
OverlayLabels
This plugin implements the Image/Overlay/Labels command.
PGM_Reader
This plugin opens PxM format images.
PlugIn
Plugins that acquire images or display windows should implement this interface.
PluginInstaller
Installs plugins dragged and dropped on the "ImageJ" window, or plugins, macros or scripts opened using the Plugins/Install command.
PlugInInterpreter
Plugins that run scripts (e.g., BeanShell, Jython) extend this class.
PNG_Writer
Saves in PNG format using the ImageIO classes.
PNM_Writer
PointToolOptions
This plugin implements the Edit/Options/Point Tool command.
Profiler
Implements the Analyze/Plot Profile and Edit/Options/Profile Plot Options commands.
Projector
This plugin creates a sequence of projections of a rotating volume (stack of slices) onto a plane using nearest-point (surface), brightest-point, or mean-value projection or a weighted combination of nearest- point projection with either of the other two methods (partial opacity).
ProxySettings
This plugin implements the Plugins/Utilities/Proxy Settings command.
Raw
This plugin implements the File/Import/Raw command.
RectToolOptions
This plugin implements the rounded rectangle tool dialog box.
Resizer
This plugin implements the Edit/Crop and Image/Adjust/Size commands.
RGBStackConverter
Converts a 2 or 3 slice stack, or a hyperstack, to RGB.
RGBStackMerge
This plugin implements the Image/Color/Merge Channels command.
RoiEnlarger
This plugin, which enlarges or shrinks selections, implements the Edit/Selection/Enlarge command.
RoiInterpolator
This class interpolates between ROIs in the ROI Manager.
RoiReader
Opens ImageJ, NIH Image and Scion Image for windows ROI outlines.
RoiRotator
This plugin implements the Edit/Selection/Rotate command.
RoiScaler
This plugin implements the Edit/Selection/Scale command.
ScaleBar
This plugin implements the Analyze/Tools/Scale Bar command.
Scaler
This plugin implements the Image/Scale command.
ScreenGrabber
This plugin implements the Plugins/Utilities/Capture Screen and Plugins/Utilities/Capture Image commands.
Selection
This plugin implements the commands in the Edit/Selection submenu.
SimpleCommands
This plugin implements the Plugins/Utilities/Unlock, Image/Rename and Plugins/Utilities/Search commands.
Slicer
Implements the Image/Stacks/Reslice command.
SpecifyROI
This plugin implements the Edit/Selection/Specify command.
Stack_Statistics
This plugin implements the Image/Stacks/Statistics command.
StackCombiner
This plugin implements the Image/Stacks/Combine command.
StackEditor
Implements the AddSlice, DeleteSlice and "Stack to Images" commands.
StackInserter
This plugin, which implements the Image/Stacks/Tools/Insert command, inserts an image or stack into another image or stack.
StackMaker
The plugin implements the Image/Stacks/Tools/Montage to Stack command.
StackPlotter
StackReducer
This plugin implements the Image/Stacks/Tools/Reduce command.
StackReverser
This plugin implements the Image/Transform/Flip Z and Image/Stacks/Tools/Reverse commands.
StackWriter
This plugin, which saves the images in a stack as separate files, implements the File/Save As/Image Sequence command.
Startup
This plugin implements the Edit/Options/Startup command.
Straightener
This plugin implements the Edit/Selection/Straighten command.
SubHyperstackMaker
This plugin is used by the Image/Stacks/Tools/Make Substack command to create substacks of hyperstacks.
SubstackMaker
This plugin implements the Image/Stacks/Tools/Make Substack command.
SurfacePlotter
Text
This plugin implements the Edit/Options/Fonts command and the dialog displayed when you double click on the text tool.
TextFileReader
This plugin displays the contents of a text file in a window.
TextReader
This plugin opens a tab or comma delimeted text file as an image.
TextWriter
This plugin implements the File/Save As/Text command, which saves the contents of Editor windows and TextWindows (e.g., "Log" and "Results").
ThreadLister
Displays thread information in a text window.
Thresholder
This plugin implements the Process/Binary/Make Binary and Convert to Mask commands.
URLOpener
Opens TIFFs, ZIP compressed TIFFs, DICOMs, GIFs and JPEGs using a URL.
WandToolOptions
This plugin implements the Edit/Options/Wand Tool command.
WindowOrganizer
This class implements the Window menu's "Show All", "Main Window", "Cascade" and "Tile" commands.
XY_Reader
This plugin implements the File/Import/XY Coordinates command.
XYCoordinates
Writes the XY coordinates and pixel values of all non-background pixels to a tab-delimited text file.
ZAxisProfiler
Implements the Image/Stacks/Plot Z-axis Profile command, which plots the selection mean gray value versus slice number.
Zoom
This plugin implements the commands in the Image/Zoom submenu.
ZProjector
This plugin performs a z-projection of the input stack.