htslib (1.22.1+ds2-1build1) stonking; urgency=medium

  * No-change rebuild against libssl4

 -- Ravi Kant Sharma <ravi.kant.sharma@canonical.com>  Fri, 24 Jul 2026 10:38:10 +0000

htslib (1.22.1+ds2-1) unstable; urgency=medium

  * Properly clean the upstream release tarball.
  * Don't ship architecture-specific files in htslib-test; regenerate
    them at test-time using autoconf.
  * d/libhts3t64.symbols: add new symbols for the latest release.

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 04 Sep 2025 13:56:30 +0200

htslib (1.22.1+ds-2) unstable; urgency=medium

  * d/htslib-test.install: also install ref_cache/*.[ch]. Closes:
    #1111788

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 03 Sep 2025 20:45:19 +0200

htslib (1.22.1+ds-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.7.2 (routine-update)
  * d/copyright: Also excluding config.{guess,sub}

 -- Steffen Moeller <moeller@debian.org>  Sun, 17 Aug 2025 21:04:46 +0200

htslib (1.21+ds-1) unstable; urgency=medium

  * Migrate htslib 1.21 from experimental to unstable.

 -- Étienne Mollier <emollier@debian.org>  Thu, 06 Feb 2025 21:23:41 +0100

htslib (1.21+ds-0+exp2) experimental; urgency=medium

  * d/libhts3t64.symbols: htslib_nibble2base is architecture specific.
    This symbol is an alternative function to nibble2base_default when
    SSSE3 or NEON vector instructions are available, limiting the set of
    supported architectures to a peculiar set.  Updating the symbol table
    so it matches exposed list on architectures that do not support the
    accelerated symbol.

 -- Étienne Mollier <emollier@debian.org>  Wed, 13 Nov 2024 20:47:53 +0100

htslib (1.21+ds-0+exp1) experimental; urgency=medium

  * New upstream version 1.21+ds
  * cram_to_bam_export.patch: delete: upstream exposed cram_to_bam.
    Note that cram_to_bam is an internal symbol that should not be used
    in normal situations.
  * d/patches/*: unfuzz patches.
  * d/libhts3t64.symbols: record newly introduced symbols.
  * fix_sequence_of_linked_libs.patch: normalise Last-Update.
  * d/libhts3t64.lintian-overrides: delete.
    package-name-doesnt-match-sonames was now an unused override.
  * d/htslib-test.lintian-overrides: flag false positive documentation.
  * d/libhts-dev.lintian-overrides: new.
    Hide the unstripped-static-library affecting libhts.a.  A comment in
    d/rules suggests symbols are needed by reverse dependency sambamba.

 -- Étienne Mollier <emollier@debian.org>  Tue, 12 Nov 2024 23:06:44 +0100

htslib (1.20+ds-2) unstable; urgency=medium

  * Team upload.
  * d/control: libhts-dev: Add missing dependency on libbz2-dev.
    Closes: #1086367, #1086368.

 -- Santiago Vila <sanvila@debian.org>  Thu, 31 Oct 2024 18:32:00 +0100

htslib (1.20+ds-1) unstable; urgency=medium

  * New upstream version 1.20+ds
  * d/copyright: update copyright year.
  * d/control: declare compliance to standards version 4.7.0.
  * Patch fix_float_precision: refresh.
  * testShebang.patch: unfuzz.
  * d/libhts3t64.symbols: introduce new upstream functions.

 -- Étienne Mollier <emollier@debian.org>  Wed, 29 May 2024 12:25:07 +0200

htslib (1.19+ds-1.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Rename libraries for 64-bit time_t transition.  Closes: #1062344

 -- Lukas Märdian <slyon@debian.org>  Wed, 28 Feb 2024 10:41:39 +0000

htslib (1.19+ds-1) unstable; urgency=medium

  * Migrate htslib 1.19 from experimental to unstable.

 -- Étienne Mollier <emollier@debian.org>  Sat, 17 Feb 2024 11:42:52 +0100

htslib (1.19+ds-0+exp0) experimental; urgency=medium

  * New upstream version 1.19+ds
  * fix_float_precision: refresh patch.
  * fix_sequence_of_linked_libs: refresh patch.
  * trim-file-prefix.patch: refresh.
  * d/libhts3.symbols: remove a recorded symbol(!)
    bgzf_idx_amend_last was recorded by accident and is not part of the
    internals of the htslib anymore.  Reverse dependencies had no way of
    using this function by accident, as it is not part of the public API,
    and preliminary tests against reverse dependencies show no regressions
    seemingly related to the missing symbol.
  * reinject-bgzf_idx_amend_last.patch: unapplied new.
    This patch is kept handy to reintroduce missing bgzf_idx_amend_last
    symbol if need be, but it is not applied yet.

 -- Étienne Mollier <emollier@debian.org>  Fri, 15 Dec 2023 22:25:33 +0100

htslib (1.18+ds-1) unstable; urgency=medium

  * Migrate htslib 1.18 from experimental to unstable.

 -- Étienne Mollier <emollier@debian.org>  Tue, 07 Nov 2023 19:46:30 +0100

htslib (1.18+ds-0+exp1) experimental; urgency=medium

  * New upstream version 1.18+ds
  * testShebang.patch: refresh.
  * fix_float_precision: refresh patch.
  * cram_to_bam_export.patch: refresh.
  * fix_sequence_of_linked_libs.patch: refresh.
  * trim-file-prefix.patch: refresh.
  * fix-cram-external-header.patch: remove: applied upstream.
  * fix-whatis-entry.patch: remove: applied upstream.
  * debian/*.symbols*: introduce new symbols.
  * d/copyright: update upstream copyright year.

 -- Étienne Mollier <emollier@debian.org>  Wed, 23 Aug 2023 18:42:10 +0200

htslib (1.17+ds-1) unstable; urgency=medium

  * Migrate htslib to unstable.
  * d/control: declare libhts3 breaks samtools < 1.17.

 -- Étienne Mollier <emollier@debian.org>  Thu, 22 Jun 2023 22:21:42 +0200

htslib (1.17+ds-0+exp1) experimental; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * d/control: fix indentation in build dependencies
  * d/control: clear fields with obsolete packages
  * Patches triage:
    - no_git_version patch: forwarding not-needed
    - fPIC.patch: unfuzz
    - cram_to_bam_export.patch: unfuzz
    - fix_sequence_of_linked_libs.patch: unfuzz
    - trim-file-prefix.patch: refresh
  * fix-cram-external-header.patch: new patch.
    This fixes a FTBFS caused by a typo in the source code.
  * d/libhts3.symbols: update symbols table.
    Upstream is now tracking symbols versioning.  The change is large with
    numerous missing entries, but that is because of the "@Base" being
    replaced by the versioned "@HTSLIB_*" entries.
  * d/t/run-unit-test: copy htslib.map.
    This file is needed for one of the linking tests done during the
    autopkgtest run, otherwise it fails.
  * fix-whatis-entry.patch: new patch.
    This change fixes a bad whatis(1) entry caught by lintian.

 -- Étienne Mollier <emollier@debian.org>  Sun, 11 Jun 2023 20:10:19 +0200

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog libhts3t64`.
