htsjdk (4.3.0+dfsg-1) unstable; urgency=medium

  * New upstream version 4.3.0+dfsg
  * Refreshing patches
  * Raising Standards version to 4.7.3:
    - Removing Priority: optional, which is default
    - Removing R-R-R: no, which is default
  * Rewriting d/watch with version 5
  * Using samtools from Debian during the tests, whatever its version might be
  * Fixing FSF address in d/copyright

 -- Pierre Gruet <pgt@debian.org>  Tue, 23 Dec 2025 23:36:30 +0100

htsjdk (4.1.3+dfsg-2) unstable; urgency=medium

  * Updating the classpath of the built jar
  * Updating the installed POM file (Closes: #1091589)

 -- Pierre Gruet <pgt@debian.org>  Mon, 30 Dec 2024 10:33:32 +0100

htsjdk (4.1.3+dfsg-1) unstable; urgency=medium

  * New upstream version 4.1.3+dfsg
  * Refreshing patches
  * Using libjson-java instead of mjson to replace non-free org.json
  * Updating Maven rules
  * Removing a test file that seems to be unreadable
  * Changing date format in patch 10

 -- Pierre Gruet <pgt@debian.org>  Thu, 26 Dec 2024 23:44:56 +0100

htsjdk (4.1.0+dfsg-2) unstable; urgency=medium

  * Raising Standards version to 4.7.0 (no change)
  * Updating autopkgtest linked to drop-seq after changes in this package

 -- Pierre Gruet <pgt@debian.org>  Wed, 15 May 2024 22:01:02 +0200

htsjdk (4.1.0+dfsg-1) unstable; urgency=medium

  * New upstream version 4.1.0+dfsg
  * Refreshing patches

 -- Pierre Gruet <pgt@debian.org>  Sun, 11 Feb 2024 22:41:39 +0100

htsjdk (4.0.2+dfsg-2) unstable; urgency=medium

  * Excluding one more test needing the network

 -- Pierre Gruet <pgt@debian.org>  Thu, 14 Dec 2023 13:05:18 +0100

htsjdk (4.0.2+dfsg-1) unstable; urgency=medium

  * New upstream version 4.0.2+dfsg
  * Refreshing patches
  * Adding nashorn to maven.ignoreRules
  * Using mjson instead of unpackaged, non-DFSG-free org.json
  * Solving ambiguous assertions in the unit tests
  * Deactivating the tests for VCF 4.4 as this version of htsjdk does not
    handle them

 -- Pierre Gruet <pgt@debian.org>  Thu, 14 Dec 2023 10:11:20 +0100

htsjdk (3.0.5+dfsg-2) unstable; urgency=medium

  * Ensuring directories exist before the unit tests attempt to create files
    inside (Closes: #1055447)

 -- Pierre Gruet <pgt@debian.org>  Wed, 08 Nov 2023 10:13:12 +0100

htsjdk (3.0.5+dfsg-1) unstable; urgency=medium

  * New upstream version 3.0.5+dfsg
  * Refreshing patches
  * Skipping more tests needing the network

 -- Pierre Gruet <pgt@debian.org>  Tue, 20 Jun 2023 14:46:10 +0200

htsjdk (3.0.4+dfsg-2) unstable; urgency=high

  * Team upload.
  * debian/tests/control: Restrict all tests to architectures supported by
    sra-sdk, which subsumed ngs-sdk: amd64 and arm64.

 -- Aaron M. Ucko <ucko@debian.org>  Mon, 23 Jan 2023 22:16:14 -0500

htsjdk (3.0.4+dfsg-1) unstable; urgency=medium

  * New upstream version 3.0.4+dfsg
  * Refreshing patches
  * Raising Standards version to 4.6.2 (no change)

 -- Pierre Gruet <pgt@debian.org>  Tue, 27 Dec 2022 20:25:59 +0100

htsjdk (3.0.2+dfsg-1) unstable; urgency=medium

  * Adding missing DEP-3 headers to patches
  * Forwarding patches

 -- Pierre Gruet <pgt@debian.org>  Thu, 03 Nov 2022 20:54:49 +0100

htsjdk (3.0.2+dfsg-1~exp0) experimental; urgency=medium

  * New upstream version 3.0.2+dfsg
  * Refreshing patches
  * Raising Standards version to 4.6.1 (no change)
  * Updating d/watch after a change in Github layout
  * Updating the POM file and its signature
  * Depending on libmjson-java instead of libjson-simple-java
  * Installing the javadoc in /usr/share/doc/libhtsjdk-java/
  * Updating the Lintian override related to embedded JS after a change in
    Lintian syntax
  * Passing long instead of int in HtsCRAMCodec30And21QueryTest
  * Excluding new tests requiring the network
  * Deactivating testFlushNotSpammed which seems to be GC-dependent
  * Using rhino instead of nashorn as JS engine, to build against openjdk-17

 -- Pierre Gruet <pgt@debian.org>  Tue, 01 Nov 2022 17:37:52 +0100

htsjdk (2.24.1+dfsg-3) unstable; urgency=medium

  * Restricting the architectures set to run pilon-related autopkgtest, based
    on the actual tests run in the pilon package

 -- Pierre Gruet <pgt@debian.org>  Sat, 05 Mar 2022 07:33:09 +0100

htsjdk (2.24.1+dfsg-2) unstable; urgency=medium

  * Adding eight autopkgtests to test reverse-dependencies when upgrading
    htsjdk (Closes: #920588)

 -- Pierre Gruet <pgt@debian.org>  Fri, 04 Mar 2022 22:53:22 +0100

htsjdk (2.24.1+dfsg-1) unstable; urgency=medium

  [ Olivier Sallou ]
  * lintian fixes in d/patches

  [ Pierre Gruet ]
  * New upstream version 2.24.1+dfsg
  * Setting Standards version to 4.6.0 (no change)
  * Refreshing d/copyright
  * Refreshing poms
  * Refreshing patches
  * Skipping more tests using http
  * Refreshing classpath of the build jar
  * Updating dependencies list
  * Using json-simple instead of unpackaged mjson
  * Adding myself as uploader
  * Removing default gbp.conf file
  * Adding a Lintian override for the embedded Javascript
  * Marking the -doc package as Multi-Arch: foreign
  * Trim trailing whitespace.
  * Use secure URI in Homepage field.
  * Forwarding patches
  * Adding description of patch 120-fix-build.patch
  * Refreshing libhtsjdk-java.README.Debian

 -- Pierre Gruet <pgt@debian.org>  Tue, 23 Nov 2021 22:03:25 +0100

htsjdk (2.23.0+dfsg-2) unstable; urgency=medium

  * source-only upload

 -- Olivier Sallou <osallou@debian.org>  Tue, 22 Sep 2020 13:14:11 +0000

htsjdk (2.23.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Andreas Tille <tille@debian.org>  Thu, 10 Sep 2020 17:20:43 +0200

htsjdk (2.22.0+dfsg-1) unstable; urgency=medium

  * New upstream release

 -- Olivier Sallou <osallou@debian.org>  Fri, 29 May 2020 11:08:17 +0000

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog libhtsjdk-java`.
