# Package htsjdk.samtools.cram.compression.fqzcomp

package htsjdk.samtools.cram.compression.fqzcomp

Related Packages
Package
Description
htsjdk.samtools.cram.compression
htsjdk.samtools.cram.compression.nametokenisation
htsjdk.samtools.cram.compression.range
htsjdk.samtools.cram.compression.rans
Classes
Class
Description
FQZCompDecode
Decoder for the CRAM 3.1 FQZComp codec, used for compressing quality scores.
FQZCompEncode
Encoder for the CRAM 3.1 FQZComp quality score compression codec.
FQZCompExternalCompressor
External compressor wrapper for the FQZComp quality score codec.
FQZGlobalFlags
Global flags byte for the FQZComp codec, read from the first byte after the version number in the FQZComp parameter header.
FQZModels
Adaptive arithmetic coding models used by FQZComp for encoding and decoding quality scores.
FQZParam
A single parameter block for the FQZComp quality score codec.
FQZParams
Global parameters for the FQZComp quality score codec.
FQZState
Mutable state tracked during FQZComp encoding and decoding.
FQZUtils
Utility methods for FQZComp table serialization.