htsjdk (5.0.0+dfsg-1) unstable; urgency=medium

  * New upstream version 5.0.0+dfsg
  * Refreshing patches
  * Raising Standards version to 4.7.4
  * Updating d/copyright
  * Removing obsolete skip-non-installable restrictions in d/t/control
  * Skipping test requiring too much memory
  * Using standard inflater/deflater instead of the unpackaged one that was
    chosen by upstream

 -- Pierre Gruet <pgt@debian.org>  Fri, 29 May 2026 13:36:56 +0200

htsjdk (4.3.0+dfsg-1) unstable; urgency=medium

  * New upstream version 4.3.0+dfsg
  * Refreshing patches
  * Raising Standards version to 4.7.3:
    - Removing Priority: optional, which is default
    - Removing R-R-R: no, which is default
  * Rewriting d/watch with version 5
  * Using samtools from Debian during the tests, whatever its version might be
  * Fixing FSF address in d/copyright

 -- Pierre Gruet <pgt@debian.org>  Tue, 23 Dec 2025 23:36:30 +0100

htsjdk (4.1.3+dfsg-2) unstable; urgency=medium

  * Updating the classpath of the built jar
  * Updating the installed POM file (Closes: #1091589)

 -- Pierre Gruet <pgt@debian.org>  Mon, 30 Dec 2024 10:33:32 +0100

htsjdk (4.1.3+dfsg-1) unstable; urgency=medium

  * New upstream version 4.1.3+dfsg
  * Refreshing patches
  * Using libjson-java instead of mjson to replace non-free org.json
  * Updating Maven rules
  * Removing a test file that seems to be unreadable
  * Changing date format in patch 10

 -- Pierre Gruet <pgt@debian.org>  Thu, 26 Dec 2024 23:44:56 +0100

htsjdk (4.1.0+dfsg-2) unstable; urgency=medium

  * Raising Standards version to 4.7.0 (no change)
  * Updating autopkgtest linked to drop-seq after changes in this package

 -- Pierre Gruet <pgt@debian.org>  Wed, 15 May 2024 22:01:02 +0200

htsjdk (4.1.0+dfsg-1) unstable; urgency=medium

  * New upstream version 4.1.0+dfsg
  * Refreshing patches

 -- Pierre Gruet <pgt@debian.org>  Sun, 11 Feb 2024 22:41:39 +0100

htsjdk (4.0.2+dfsg-2) unstable; urgency=medium

  * Excluding one more test needing the network

 -- Pierre Gruet <pgt@debian.org>  Thu, 14 Dec 2023 13:05:18 +0100

htsjdk (4.0.2+dfsg-1) unstable; urgency=medium

  * New upstream version 4.0.2+dfsg
  * Refreshing patches
  * Adding nashorn to maven.ignoreRules
  * Using mjson instead of unpackaged, non-DFSG-free org.json
  * Solving ambiguous assertions in the unit tests
  * Deactivating the tests for VCF 4.4 as this version of htsjdk does not
    handle them

 -- Pierre Gruet <pgt@debian.org>  Thu, 14 Dec 2023 10:11:20 +0100

htsjdk (3.0.5+dfsg-2) unstable; urgency=medium

  * Ensuring directories exist before the unit tests attempt to create files
    inside (Closes: #1055447)

 -- Pierre Gruet <pgt@debian.org>  Wed, 08 Nov 2023 10:13:12 +0100

htsjdk (3.0.5+dfsg-1) unstable; urgency=medium

  * New upstream version 3.0.5+dfsg
  * Refreshing patches
  * Skipping more tests needing the network

 -- Pierre Gruet <pgt@debian.org>  Tue, 20 Jun 2023 14:46:10 +0200

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog libhtsjdk-java-doc`.
