# Package htsjdk.samtools.cram

package htsjdk.samtools.cram

Related Packages
Package
Description
htsjdk.samtools
htsjdk.samtools.cram.build
htsjdk.samtools.cram.common
htsjdk.samtools.cram.compression
htsjdk.samtools.cram.digest
htsjdk.samtools.cram.encoding
htsjdk.samtools.cram.io
htsjdk.samtools.cram.ref
htsjdk.samtools.cram.structure
Class
Description
BAIEntry
Class used to construct a BAI index for a CRAM file.
CRAIEntry
A class representing CRAI index entry: file and alignment offsets for each slice.
CRAIIndex
CRAI index used for CRAM files.
CRAIIndexMerger
Merges CRAM index files for (headerless) parts of a CRAM file into a single index file.
CramComparison
Command-line tool for comparing two SAM/BAM/CRAM files record-by-record.
CramConverter
Simple command-line tool for converting between SAM/BAM/CRAM formats, primarily for experimenting with CRAM 3.1 compression profiles.
CRAMException
Created by edwardk on 8/13/15.
CramStats
Dumps per-DataSeries compression statistics from a CRAM file.