# Package htsjdk.tribble

package htsjdk.tribble

Related Packages
Package
Description
htsjdk.tribble.annotation
htsjdk.tribble.bed
htsjdk.tribble.example
htsjdk.tribble.exception
htsjdk.tribble.gff
htsjdk.tribble.index
htsjdk.tribble.IntervalList
htsjdk.tribble.readers
htsjdk.tribble.util
Class
Description
AbstractFeatureCodec<FEATURE_TYPE extends Feature, SOURCE>
Simple basic class providing much of the basic functionality of codecs Every concrete subclass must implement `FeatureCodec.canDecode(String)` to indicate whether it can decode the file.
AbstractFeatureReader<T extends Feature, SOURCE>
jrobinso
AbstractFeatureReader.ComponentMethods
AsciiFeatureCodec<T extends Feature>
A convenience base class for codecs that want to read in features from ASCII lines.
BinaryFeatureCodec<T extends Feature>
Implements common methods of `FeatureCodec`s that read from `PositionalBufferedStream`s.
CloseableTribbleIterator<T extends Feature>
The basic iterator we use in Tribble, which allows closing and basic iteration.
Feature
Marker interface for Locatables with Tribble support.
FeatureCodec<FEATURE_TYPE extends Feature, SOURCE>
The base interface for classes that read in features.
FeatureCodecHeader
A class to represent a header of a feature containing file.
FeatureReader<T extends Feature>
the basic interface that feature sources need to match
MutableFeature
A mutable concrete Feature.
NameAwareCodec
Created by IntelliJ IDEA.
NamedFeature
An interface for features provided via an interval file, e.g.
SimpleFeature
A simple concrete Feature.
TabixFeatureReader<T extends Feature, SOURCE>
Tribble
Common, tribble wide constants and static functions
TribbleException
TribbleException.CorruptedIndexFile
TribbleException.FeatureFileDoesntExist
TribbleException.InternalCodecException
TribbleException.InvalidDecodeLine
TribbleException.InvalidHeader
TribbleException.MalformedFeatureFile
TribbleException.TabixReaderFailure
TribbleException.UnableToCreateCorrectIndexType
TribbleException.UnableToReadIndexFile
TribbleIndexedFeatureReader<T extends Feature, SOURCE>
A reader for text feature files (i.e.