# Package htsjdk.samtools.cram.build

package htsjdk.samtools.cram.build

Related Packages
Package
Description
htsjdk.samtools.cram
Classes
Class
Description
CompressionHeaderFactory
Factory for creating CRAM compression headers for containers when writing to a CRAM stream.
ContainerFactory
Aggregates SAMRecord objects into one or more `Container`s, composed of one or more `Slice`s.
CramContainerHeaderIterator
Iterate over CRAM containers from an input stream, and unlike `CramContainerIterator` only the header of each container is read, rather than the whole stream.
CramContainerIterator
An iterator of CRAM containers read from an `InputStream`.
CramIO
A collection of methods to read and write special values to/from CRAM files.
CRAMReferenceRegion
Holds a region/fragment of a reference contig.
CramSpanContainerIterator
An iterator of CRAM containers read from locations in a `SeekableStream`.
SliceFactory
Factory for creating `Slice`s when writing a CRAM stream.
Utils