# Package htsjdk.tribble.gff

package htsjdk.tribble.gff

Related Packages
Package
Description
htsjdk.tribble
Class
Description
Gff3BaseData
Gff3Codec
Codec for parsing Gff3 files, as defined in https://github.com/The-Sequence-Ontology/Specifications/blob/31f62ad469b31769b43af42e0903448db1826925/gff3.md Note that while spec states that all feature types must be defined in sequence ontology, this implementation makes no check on feature types, and allows any string as feature type Each feature line in the Gff3 file will be emitted as a separate feature.
Gff3Codec.DecodeDepth
Gff3Codec.Gff3Directive
Enum for parsing directive lines.
Gff3Constants
Gff3Feature
Gff3 format spec is defined at https://github.com/The-Sequence-Ontology/Specifications/blob/31f62ad469b31769b43af42e0903448db1826925/gff3.md Discontinuous features which are split between multiple lines in the gff files are implemented as separate features linked as "co-features"
Gff3FeatureImpl
Gff3 format spec is defined at https://github.com/The-Sequence-Ontology/Specifications/blob/31f62ad469b31769b43af42e0903448db1826925/gff3.md Discontinuous features which are split between multiple lines in the gff files are implemented as separate features linked as "co-features"
Gff3Writer
A class to write out gff3 files.
SequenceRegion
Represents a sequence region feature in a gff3 file.