# Package htsjdk.samtools.sra

package htsjdk.samtools.sra

Related Packages
Package
Description
htsjdk.samtools
Classes
Class
Description
ReferenceCache
That is a thread-safe wrapper for a list of cache Reference objects.
SRAAccession
Describes a single SRA accession for SRA read collection Also provides app string functionality and allows to check if working SRA is supported on the running platform Important: due to checks performed in SRAAccession.isValid(), we won't recognise any accessions other than ones that follow the pattern "^[SED]RR[0-9]{6,9}$", e.g.
SRAAlignmentIterator
Iterator for aligned reads.
SRAIndexedSequenceFile
Allows reading Reference data from SRA
SRALazyRecord
Extends SAMRecord so that any of the fields will be loaded only when needed.
SRAUnalignmentIterator
Iterator for unaligned reads.
SRAUtils
Provides some functionality which can be used by other classes Created by andrii.nikitiuk on 10/28/15.