# Package htsjdk.variant.bcf2

package htsjdk.variant.bcf2

Class
Description
BCF2Codec
Decode BCF2 files
BCF2Codec.LazyData
BCF2Codec.SitesInfoForDecoding
BCF2Decoder
BCF2GenotypeFieldDecoders
An efficient scheme for building and obtaining specialized genotype field decoders.
BCF2GenotypeFieldDecoders.Decoder
Decoder a field (implicit from creation) encoded as typeDescriptor in the decoder object in the GenotypeBuilders one for each sample in order.
BCF2LazyGenotypesDecoder
Lazy version of genotypes decoder for BCF2 genotypes
BCF2Type
BCF2 types and associated information
BCF2Utils
Common utilities for working with BCF2 files Includes convenience methods for encoding, decoding BCF2 type descriptors (size + type)
BCFVersion
Simple holder for BCF version information User: depristo Date: 8/2/12 Time: 2:16 PM