# Package htsjdk.beta.plugin.reads

package htsjdk.beta.plugin.reads

Related Packages
Package
Description
htsjdk.beta.plugin
htsjdk.beta.plugin.hapref
htsjdk.beta.plugin.interval
htsjdk.beta.plugin.registry
htsjdk.beta.plugin.variants
Class
Description
ReadsBundle<T extends IOPath>
A class for creating a `Bundle` for reads and reads-related resources.
ReadsCodec
Base class for all `HtsContentType.ALIGNED_READS` codecs.
ReadsDecoder
Base class for all `HtsContentType.ALIGNED_READS` decoders.
ReadsDecoderOptions
Reads decoder options (shared/common).
ReadsEncoder
Base interface for `HtsContentType.ALIGNED_READS` encoders.
ReadsEncoderOptions
General reads encoder options.
ReadsFormats
Class with string constants for known formats supported by reads codecs.
ReadsQuery<R extends HtsRecord>
Query methods specific to `ReadsDecoder`s.