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graph_expansion_with_blocker.cpp
/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
* See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
* Author(s): Vincent Rouvreau
*
* Copyright (C) 2014 Inria
*
* Modification(s):
* - YYYY/MM Author: Description of the modification
*/
#include <gudhi/Simplex_tree.h>
#include <iostream>
using Simplex_tree = Gudhi::Simplex_tree<>;
using Simplex_handle = Simplex_tree::Simplex_handle;
int main(int argc, char* const argv[]) {
// Construct the Simplex Tree with a 1-skeleton graph example
Simplex_tree stree;
stree.insert_simplex({0, 1}, 0.);
stree.insert_simplex({0, 2}, 1.);
stree.insert_simplex({0, 3}, 2.);
stree.insert_simplex({1, 2}, 3.);
stree.insert_simplex({1, 3}, 4.);
stree.insert_simplex({2, 3}, 5.);
stree.insert_simplex({2, 4}, 6.);
stree.insert_simplex({3, 6}, 7.);
stree.insert_simplex({4, 5}, 8.);
stree.insert_simplex({4, 6}, 9.);
stree.insert_simplex({5, 6}, 10.);
stree.insert_simplex({6}, 10.);
stree.expansion_with_blockers(3, [&](Simplex_handle sh) {
bool result = false;
std::clog << "Blocker on [";
// User can loop on the vertices from the given simplex_handle i.e.
for (auto vertex : stree.simplex_vertex_range(sh)) {
// We block the expansion, if the vertex '6' is in the given list of vertices
if (vertex == 6) result = true;
std::clog << vertex << ", ";
}
std::clog << "] ( " << stree.filtration(sh);
// User can re-assign a new filtration value directly in the blocker (default is the maximal value of boundaries)
stree.assign_filtration(sh, stree.filtration(sh) + 1.);
std::clog << " + 1. ) = " << result << std::endl;
return result;
});
std::clog << "********************************************************************\n";
std::clog << "* The complex contains " << stree.num_simplices() << " simplices";
std::clog << " - dimension " << stree.dimension() << "\n";
std::clog << "* Iterator on Simplices in the filtration, with [filtration value]:\n";
for (auto f_simplex : stree.filtration_simplex_range()) {
std::clog << " "
<< "[" << stree.filtration(f_simplex) << "] ";
for (auto vertex : stree.simplex_vertex_range(f_simplex)) std::clog << "(" << vertex << ")";
std::clog << std::endl;
}
return 0;
}
Gudhi::Simplex_tree
Simplex Tree data structure for representing simplicial complexes.
Definition Simplex_tree.h:98
Gudhi::Simplex_tree::assign_filtration
void assign_filtration(Simplex_handle sh, Filtration_value fv)
Sets the filtration value of a simplex.
Definition Simplex_tree.h:738
Gudhi::Simplex_tree::insert_simplex
std::pair< Simplex_handle, bool > insert_simplex(const InputVertexRange &simplex, Filtration_value filtration=0)
Insert a simplex, represented by a range of Vertex_handles, in the simplicial complex.
Definition Simplex_tree.h:1045
Gudhi::Simplex_tree::simplex_vertex_range
Simplex_vertex_range simplex_vertex_range(Simplex_handle sh) const
Returns a range over the vertices of a simplex.
Definition Simplex_tree.h:369
Gudhi::Simplex_tree::filtration
static Filtration_value filtration(Simplex_handle sh)
Returns the filtration value of a simplex.
Definition Simplex_tree.h:727
Gudhi::Simplex_tree::expansion_with_blockers
void expansion_with_blockers(int max_dim, Blocker block_simplex)
Expands a simplex tree containing only a graph. Simplices corresponding to cliques in the graph are a...
Definition Simplex_tree.h:1884
Gudhi::Simplex_tree< Gudhi::Simplex_tree_options_fast_persistence >::Simplex_handle
Dictionary::const_iterator Simplex_handle
Definition Simplex_tree.h:192
Gudhi::Simplex_tree::filtration_simplex_range
Filtration_simplex_range const & filtration_simplex_range(Indexing_tag=Indexing_tag()) const
Returns a range over the simplices of the simplicial complex, in the order of the filtration.
Definition Simplex_tree.h:358
Gudhi::Simplex_tree::num_simplices
size_t num_simplices() const
Returns the number of simplices in the simplex_tree.
Definition Simplex_tree.h:791