Package: gubbins
Version: 3.4.3-4
Architecture: amd64
Architecture-Variant: amd64v3
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 506
Depends: libc6 (>= 2.38), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3-multiprocess, python3-numpy, python3-scipy, python3:any, python3, raxml
Recommends: iqtree, fasttree
Suggests: r-base-core
Section: science
Priority: optional
Homepage: https://nickjcroucher.github.io/gubbins/
Description: phylogenetic analysis of genome sequences
 Gubbins supports rapid phylogenetic analysis of large samples of
 recombinant bacterial whole genome sequences.
 .
 Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
 Sequences) is an algorithm that iteratively identifies loci containing
 elevated densities of base substitutions while concurrently constructing
 a phylogeny based on the putative point mutations outside of these
 regions. Simulations demonstrate the algorithm generates highly accurate
 reconstructions under realistic models of short-term bacterial
 evolution, and can be run in only a few hours on alignments of hundreds
 of bacterial genome sequences.
