Package: ggd-utils
Version: 1.0.0+ds-3
Architecture: amd64
Architecture-Variant: amd64v3
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6702
Depends: libc6 (>= 2.34)
Built-Using: golang-1.25 (= 1.25.0-0ubuntu1), golang-github-alexflint-go-arg (= 1.6.0-1), golang-github-alexflint-go-scalar (= 1.2.0-1), golang-github-biogo-hts (= 1.4.5+dfsg1-2), golang-github-cespare-xxhash (= 2.3.0-1), golang-github-dsnet-compress (= 0.0.2~git20230904.39efe44+dfsg1-2), golang-github-klauspost-compress (= 1.18.0+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-ulikunitz-xz (= 0.5.15-1)
Section: science
Priority: optional
Homepage: https://github.com/gogetdata/ggd-utils
Description: programs for use in ggd
 Takes a genome file and (currently) a .vcf.gz or
 a .bed.gz and checks that:
 .
  * a .tbi is present
  * the VCF has ""##fileformat=VCF" as the first line
  * the VCF has a #CHROM header
  * the chromosome are in the order specified by the genome file (and present)
  * the positions are sorted
  * the positions are <= the chromosome lengths defined in the genome file.
 .
 As a result, any new genome going into GGD will have
 a .genome file that will dictate the sort order
 and presence or absence of the 'chr' prefix for chromosomes
