Package: ggd-utils
Version: 1.0.0+ds-1ubuntu0.24.04.3
Architecture: amd64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Installed-Size: 5447
Depends: libc6 (>= 2.34)
Built-Using: golang-1.22 (= 1.22.2-2ubuntu0.4), golang-github-alexflint-go-arg (= 1.3.0+ds-2), golang-github-alexflint-go-scalar (= 1.0.0+ds-2), golang-github-biogo-hts (= 1.4.4+dfsg1-1), golang-github-klauspost-compress (= 1.17.7+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2)
Section: science
Priority: optional
Homepage: https://github.com/gogetdata/ggd-utils
Description: programs for use in ggd
 Takes a genome file and (currently) a .vcf.gz or
 a .bed.gz and checks that:
 .
     * a .tbi is present
     * the VCF has ""##fileformat=VCF" as the first
     line
     * the VCF has a #CHROM header
     * the chromosome are in the order specified by
     the genome file (and present)
     * the positions are sorted
     * the positions are <= the chromosome lengths
     defined in the genome file.
 .
 As a result, any new genome going into GGD will have
 a .genome file that will dictate the sort order
 and presence or absence of the 'chr' prefix for chromosomes
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
