Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: GenomicsDB
Source: https://github.com/GenomicsDB/GenomicsDB

Files: *
Copyright: 2018-2020 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: .github/resources/hadoop/hadoop-env.sh
Copyright: no-info-found
License: Apache-2.0

Files: .github/scripts/cleanup_hosts.sh
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: .github/scripts/test_hdfs_htslib_support.sh
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: CMakeLists.txt
       cmake/Modules/FindProtobufWrapper.cmake
       cmake/Modules/Findhtslib.cmake
Copyright: 2023 dātma, inc™
           2019-2023 Omis Data Automation, Inc.
License: Expat

Files: Dockerfile
       Dockerfile.release
       Dockerfile.release_prereqs
       cmake/Modules/FindCURL.cmake
       cmake/Modules/FindGPerftools.cmake
       cmake/Modules/FindRapidJSON.cmake
       cmake/Modules/FindSpdlog.cmake
       cmake/Modules/Findlibcsv.cmake
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: cmake/Modules/FindTileDB.cmake
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: cmake/Modules/Findlibuuid.cmake
Copyright: 2023 dātma, inc™
License: Expat

Files: example/*
Copyright: 2016-2018 Intel Corporation
License: Expat

Files: example/java/GenomicsDBDemo/src/*
Copyright: 2023 dātma, inc™
License: Expat

Files: example/java/TestGenomicsDB.java
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: example/java/TestGenomicsDBSource.java
Copyright: 2018-2023 Omics Data Automation
License: Expat

Files: example/java/TestGenomicsDBSparkHDFS.java
Copyright: 2023 Omics Data Automation, Inc.
           2018 Univeristy of Caifornia, Los Angeles and Intel Corporation
License: Expat

Files: example/src/test_genomicsdb_importer.cc
Copyright: 2023 dātma, inc™
           2016-2017 Intel Corporation
License: Expat

Files: genomicsdb-htslib/*
Copyright: 2012-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/Makefile
       genomicsdb-htslib/bcf_sr_sort.c
       genomicsdb-htslib/bcf_sr_sort.h
       genomicsdb-htslib/config.mk.in
       genomicsdb-htslib/configure.ac
       genomicsdb-htslib/hfile.c
       genomicsdb-htslib/hfile_gcs.c
       genomicsdb-htslib/hfile_internal.h
       genomicsdb-htslib/hfile_libcurl.c
       genomicsdb-htslib/hfile_net.c
       genomicsdb-htslib/hfile_s3.c
       genomicsdb-htslib/hfile_s3_write.c
       genomicsdb-htslib/hts_internal.h
       genomicsdb-htslib/hts_os.c
       genomicsdb-htslib/htsfile.1
       genomicsdb-htslib/htsfile.c
       genomicsdb-htslib/htslib-s3-plugin.7
       genomicsdb-htslib/htslib.mk
       genomicsdb-htslib/htslib_vars.mk
       genomicsdb-htslib/multipart.c
       genomicsdb-htslib/plugin.c
       genomicsdb-htslib/regidx.c
       genomicsdb-htslib/region.c
       genomicsdb-htslib/synced_bcf_reader.c
       genomicsdb-htslib/textutils.c
       genomicsdb-htslib/textutils_internal.h
       genomicsdb-htslib/thread_pool.c
       genomicsdb-htslib/thread_pool_internal.h
       genomicsdb-htslib/vcf_sweep.c
       genomicsdb-htslib/vcfutils.c
       genomicsdb-htslib/version.sh
Copyright: 2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/bgzf.c
Copyright: Massachusetts Institute of Technology
           2009-2020 Genome Research Ltd
           2008 Broad Institute
License: Expat

Files: genomicsdb-htslib/bgzip.1
Copyright: 2018 Genome Research Limited.
           2009-2011 Broad Institute.
License: Expat

Files: genomicsdb-htslib/bgzip.c
Copyright: Massachusetts Institute of Technology
           2010-2019 Genome Research Ltd.
           2008-2009 Broad Institute
License: Expat

Files: genomicsdb-htslib/cram/*
Copyright: 2005-2020 Genome Research Ltd.
License: BSD-3-clause

Files: genomicsdb-htslib/cram/misc.h
       genomicsdb-htslib/cram/open_trace_file.c
       genomicsdb-htslib/cram/open_trace_file.h
       genomicsdb-htslib/cram/os.h
Copyright: 1993-2002 MEDICAL RESEARCH COUNCIL
License: BSD-3-clause

Files: genomicsdb-htslib/errmod.c
       genomicsdb-htslib/faidx.c
       genomicsdb-htslib/hts.c
       genomicsdb-htslib/realn.c
       genomicsdb-htslib/sam.c
       genomicsdb-htslib/tabix.1
       genomicsdb-htslib/tabix.c
       genomicsdb-htslib/tbx.c
Copyright: 2009-2013 Broad Institute.
           2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/faidx.5
       genomicsdb-htslib/sam.5
       genomicsdb-htslib/htslib/*
Copyright: 2009-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/header.c
       genomicsdb-htslib/header.h
Copyright: 2005-2020 Genome Research Ltd.
License: BSD-3-clause

Files: genomicsdb-htslib/htslib/bgzf.h
Copyright: Massachusetts Institute of Technology
           2009-2020 Genome Research Ltd
           2008 Broad Institute
License: Expat

Files: genomicsdb-htslib/htslib/hts.h
Copyright: 2012-2020 Genome Research Ltd.
           2010-2012 Broad Institute.
           2003-2010 Heng Li <lh3@live.co.uk>
License: Expat

Files: genomicsdb-htslib/htslib/kfunc.h
       genomicsdb-htslib/htslib/khash.h
       genomicsdb-htslib/htslib/klist.h
       genomicsdb-htslib/htslib/kseq.h
       genomicsdb-htslib/htslib/kstring.h
Copyright: 2010-2020 Genome Research Ltd.
           2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat

Files: genomicsdb-htslib/htslib/knetfile.h
       genomicsdb-htslib/htslib/ksort.h
Copyright: 2008-2019 Genome Research Ltd (GRL).
License: Expat

Files: genomicsdb-htslib/htslib/sam.h
       genomicsdb-htslib/htslib/tbx.h
       genomicsdb-htslib/htslib/vcf.h
Copyright: 2009-2013 Broad Institute.
           2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/kfunc.c
       genomicsdb-htslib/kstring.c
Copyright: 2010-2020 Genome Research Ltd.
           2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat

Files: genomicsdb-htslib/knetfile.c
Copyright: 2008-2019 Genome Research Ltd (GRL).
License: Expat

Files: genomicsdb-htslib/m4/*
Copyright: 2012-2015 Dan Nicholson <dbn.lists@gmail.com>
           2004 Scott James Remnant <scott@netsplit.com>.
License: GPL-2+ with Autoconf-data exception

Files: genomicsdb-htslib/m4/hts_hide_dynamic_syms.m4
Copyright: 2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/m4/hts_prog_cc_warnings.m4
Copyright: 2015-2017 Genome Research Limited
           2002 Ville Laurikari
License: FSFAP

Files: genomicsdb-htslib/md5.c
Copyright: 2001 Alexander Peslyak and it is hereby released to the
License: public-domain

Files: genomicsdb-htslib/os/rand.c
Copyright: 1993 Martin Birgmeier
License: Other

Files: genomicsdb-htslib/probaln.c
Copyright: 2016-2017 Genome Research Ltd.
           2003-2010 Heng Li <lh3lh3@live.co.uk>
License: Expat

Files: genomicsdb-htslib/sam_internal.h
Copyright: 2019-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/test/compare_sam.pl
       genomicsdb-htslib/test/cross_validate.sh
       genomicsdb-htslib/test/fieldarith.c
       genomicsdb-htslib/test/header_syms.pl
       genomicsdb-htslib/test/hfile.c
       genomicsdb-htslib/test/hts_endian.c
       genomicsdb-htslib/test/pileup.c
       genomicsdb-htslib/test/sam.c
       genomicsdb-htslib/test/simple_test_driver.sh
       genomicsdb-htslib/test/test-bcf-sr.c
       genomicsdb-htslib/test/test-bcf-sr.pl
       genomicsdb-htslib/test/test-bcf-translate.c
       genomicsdb-htslib/test/test-logging.pl
       genomicsdb-htslib/test/test-parse-reg.c
       genomicsdb-htslib/test/test-regidx.c
       genomicsdb-htslib/test/test-vcf-api.c
       genomicsdb-htslib/test/test-vcf-sweep.c
       genomicsdb-htslib/test/test.pl
       genomicsdb-htslib/test/test_index.c
       genomicsdb-htslib/test/test_kstring.c
       genomicsdb-htslib/test/test_realn.c
       genomicsdb-htslib/test/thrash_threads1.c
       genomicsdb-htslib/test/thrash_threads2.c
       genomicsdb-htslib/test/thrash_threads3.c
       genomicsdb-htslib/test/thrash_threads4.c
       genomicsdb-htslib/test/thrash_threads5.c
       genomicsdb-htslib/test/thrash_threads6.c
       genomicsdb-htslib/test/thrash_threads7.c
       genomicsdb-htslib/test/maintainer/*
Copyright: 2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/test/fuzz/*
Copyright: 2019 Genome Research Ltd.
           2018 Google LLC.
License: Expat

Files: genomicsdb-htslib/test/mpileup/c1#pad1.sam
       genomicsdb-htslib/test/mpileup/c1#pad2.sam
       genomicsdb-htslib/test/mpileup/c1#pad3.sam
       genomicsdb-htslib/test/mpileup/mp_D.sam
       genomicsdb-htslib/test/mpileup/mp_DI.sam
       genomicsdb-htslib/test/mpileup/mp_I.sam
       genomicsdb-htslib/test/mpileup/mp_ID.sam
       genomicsdb-htslib/test/mpileup/mp_N.sam
       genomicsdb-htslib/test/mpileup/mp_N2.sam
       genomicsdb-htslib/test/mpileup/mp_P.sam
       genomicsdb-htslib/test/mpileup/mpileup.tst
       genomicsdb-htslib/test/mpileup/test-pileup.sh
       genomicsdb-htslib/test/tabix/bed_file.bed
       genomicsdb-htslib/test/tabix/tabix.tst
       genomicsdb-htslib/test/tabix/test-tabix.sh
       genomicsdb-htslib/test/test_bgzf.c
       genomicsdb-htslib/test/test_str2int.c
Copyright: 2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/test/plugins-dlhts.c
       genomicsdb-htslib/test/test_kfunc.c
       genomicsdb-htslib/test/with-shlib.sh
Copyright: 2020 University of Glasgow.
License: Expat

Files: genomicsdb-htslib/test/test_view.c
       genomicsdb-htslib/vcf.5
Copyright: 2009-2013 Broad Institute.
           2008-2020 Genome Research Ltd.
License: Expat

Files: genomicsdb-htslib/vcf.c
Copyright: 2014 Intel Corporation.
           2012-2020 Genome Research Ltd.
           2012-2013 Broad Institute.
License: Expat

Files: genomicsdb-tiledb/*
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/.github/scripts/install_catch2.sh
       genomicsdb-tiledb/.github/workflows/*
       genomicsdb-tiledb/cmake/Modules/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/cmake/Modules/FindBLOSC.cmake
       genomicsdb-tiledb/cmake/Modules/FindLZ4.cmake
       genomicsdb-tiledb/cmake/Modules/FindZSTD.cmake
Copyright: 2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/cmake/Modules/FindHDFS.cmake
Copyright: 2018 Omics Data Automation, Inc. and Intel Corporation.
License: Expat

Files: genomicsdb-tiledb/cmake/Modules/Findlibuuid.cmake
Copyright: 2023 dātma, inc™
License: Expat

Files: genomicsdb-tiledb/core/CMakeLists.txt
Copyright: 2016 MIT and Intel Corporation
           2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/include/c_api/tiledb.h
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/c_api/tiledb_storage.h
Copyright: 2019-2021 Omics Data Automation Inc.
           2018-2019 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/c_api/tiledb_utils.h
Copyright: 2023 dātma, inc™
           2019-2021 Omics Data Automation Inc.
           2018 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/codec/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/include/expressions/*
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/misc/error.h
       genomicsdb-tiledb/core/include/misc/tiledb_openssl_shim.h
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/include/misc/mem_utils.h
       genomicsdb-tiledb/core/include/misc/utils.h
Copyright: 2021-2022, Omics Data Automation Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/misc/trace.h
Copyright: 2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/misc/uri.h
Copyright: 2018-2021 Omics Data Automation, Inc.
           2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/storage/*
       genomicsdb-tiledb/core/include/storage/storage_buffer.h
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/include/storage/storage_fs.h
Copyright: 2019-2021 Omics Data Automation Inc.
           2018-2019 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/storage/storage_hdfs.h
Copyright: 2021 Omics Data Automation Inc.
           2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/include/storage/storage_manager.h
       genomicsdb-tiledb/core/include/storage/storage_manager_config.h
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/src/array/*
Copyright: 2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/array/array.cc
 genomicsdb-tiledb/core/src/array/array_iterator.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/array/array_schema.cc
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/c_api/*
Copyright: 2023 dātma, inc™
           2019-2021 Omics Data Automation Inc.
           2018 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/c_api/tiledb.cc
Copyright: 2023 dātma, inc™
           2018-2021 Omics Data Automation, Inc.
           2016 MIT and Intel Corp.
License: Expat

Files: genomicsdb-tiledb/core/src/codec/external/lz4/*
Copyright: 2011-2016 Yann Collet
License: BSD-2-clause

Files: genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c
       genomicsdb-tiledb/core/src/codec/external/lz4/lz4.h
Copyright: 2011-2024 Yann Collet
License: BSD-2-clause

Files: genomicsdb-tiledb/core/src/expressions/*
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/fragment/*
       genomicsdb-tiledb/core/src/fragment/book_keeping.cc
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/metadata/*
Copyright: 2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/misc/*
Copyright: 2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/misc/error.cc
       genomicsdb-tiledb/core/src/misc/mem_utils.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/src/misc/uri.cc
Copyright: 2023 dātma, inc™
           2021 Omics Data Automation, Inc.
           2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/misc/utils.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/storage/storage_azure_blob.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/core/src/storage/storage_buffer.cc
Copyright: 2018-2022 Omics Data Automation Inc.
License: Expat

Files: genomicsdb-tiledb/core/src/storage/storage_hdfs.cc
Copyright: 2018-2021 Omics Data Automation, Inc.
           2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/core/src/storage/storage_manager.cc
       genomicsdb-tiledb/core/src/storage/storage_manager_config.cc
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/examples/CMakeLists.txt
       genomicsdb-tiledb/examples/src/tiledb_array_3d.cc
       genomicsdb-tiledb/examples/src/tiledb_ls.cc
       genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
            2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/examples/run_examples.sh
Copyright: 2019-2021 Omics Data Automation Inc.
           2018-2019 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/examples/src/examples.h
Copyright: 2018-2022 Omics Data Automation Inc.
License: Expat

Files: genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc
 genomicsdb-tiledb/examples/src/tiledb_delete.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc
       genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/examples/src/tiledb_config.cc
Copyright: 2023 dātma, inc™
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/test/include/benchmark/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/include/catch2/*
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/src/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/src/c_api/*
Copyright: 2018-2022 Omics Data Automation, Inc.
           2016-2018 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc
 genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/src/codec/*
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/src/codec/test_codec_filter.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/src/expressions/*
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: genomicsdb-tiledb/test/src/misc/test_utils.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016 MIT and Intel Corporation
License: Expat

Files: genomicsdb-tiledb/test/src/storage_manager/test_azure_blob_storage.cc
       scripts/*
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: scripts/install_genomicsdb.sh
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/*
Copyright: 2016-2018 Intel Corporation
License: Expat

Files: src/main/CMakeLists.txt
       src/main/cpp/include/api/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/include/api/genomicsdb.h
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/include/api/genomicsdb_utils.h
Copyright: 2023 dātma, inc™
           2022-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/include/config/genomicsdb_config_base.h
       src/main/cpp/include/genomicsdb/variant_array_schema.h
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat


Files: src/main/cpp/include/genomicsdb/variant_storage_manager.h
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: src/main/cpp/include/loader/tiledb_loader.h
       src/main/cpp/include/loader/tiledb_loader_file_base.h
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/include/loader/tiledb_loader_text_file.h
Copyright: 2016-2017 Intel Corporation
License: LGPL-2

Files: src/main/cpp/include/query_operations/gt_remapper.h
       src/main/cpp/include/query_operations/gt_remapper_template_definition.h
       src/main/cpp/include/utils/alleles_combiner.h
       src/main/cpp/include/utils/alleles_combiner_template_definition.h
       src/main/cpp/include/utils/genomicsdb_logger.h
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/include/utils/fmt_writer.h
Copyright: 2020 Omics Data Automation Inc
License: Expat

Files: src/main/cpp/include/utils/vid_mapper.h
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/include/vcf/hfile_genomicsdb.h
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/src/api/*
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/src/api/genomicsdb_field.cc
       src/main/cpp/src/api/genomicsdb_utils.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/src/config/json_config.cc
Copyright: 2021-2023 Omics Data Automation Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/src/config/pb_config.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc
License: Expat

Files: src/main/cpp/src/config/variant_query_config.cc
Copyright: 2023 dātma, inc™
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc
       src/main/cpp/src/genomicsdb/variant_array_schema.cc
       src/main/cpp/src/genomicsdb/variant_field_handler.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/src/genomicsdb/variant_storage_manager.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: src/main/cpp/src/loader/*
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/src/loader/tiledb_loader.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
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Files: src/main/cpp/src/loader/tiledb_loader_text_file.cc
Copyright: 2016-2017 Intel Corporation
License: LGPL-2

Files: src/main/cpp/src/query_operations/*
Copyright: 2020 Omics Data Automation Inc
License: Expat

Files: src/main/cpp/src/query_operations/broad_combined_gvcf.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/cpp/src/query_operations/variant_operations.cc
       src/main/cpp/src/utils/known_field_info.cc
       src/main/cpp/src/utils/vid_mapper.cc
Copyright: 2023 dātma, inc™
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc
       src/main/cpp/src/utils/genomicsdb_logger.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat


Files: src/main/cpp/src/utils/vid_mapper_pb.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: src/main/cpp/src/vcf/*
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/cpp/src/vcf/htslib_fs_adapter.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/genomicsdb.pc.in
Copyright: 2023 dātma, inc™
License: Expat

Files: src/main/java/org/genomicsdb/GenomicsDBUtils.java
       src/main/java/org/genomicsdb/GenomicsDBUtilsJni.java
Copyright: 2019-2021 Omics Data Automation Inc.
           2018-2019 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/java/org/genomicsdb/importer/extensions/*
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/java/org/genomicsdb/reader/*
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/java/org/genomicsdb/spark/*
Copyright: 2018-2023 Omics Data Automation
License: Expat

Files: src/main/java/org/genomicsdb/spark/GenomicsDBConfiguration.java
       src/main/java/org/genomicsdb/spark/GenomicsDBInput.java
       src/main/java/org/genomicsdb/spark/GenomicsDBInputFormat.java
       src/main/java/org/genomicsdb/spark/GenomicsDBInputInterface.java
       src/main/java/org/genomicsdb/spark/GenomicsDBInputSplit.java
       src/main/java/org/genomicsdb/spark/GenomicsDBJavaSparkFactory.java
       src/main/java/org/genomicsdb/spark/GenomicsDBPartitionInfo.java
Copyright: 2016-2018 Intel Corporation
License: Expat

Files: src/main/java/org/genomicsdb/spark/GenomicsDBQueryInfo.java
Copyright: 2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: src/main/java/org/genomicsdb/spark/api/GenomicsDBSparkBindings.java
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/java/org/genomicsdb/spark/sources/GenomicsDBRecordReader.java
Copyright: 2016-2018 Intel Corporation
License: Expat

Files: src/main/jni/src/*
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/main/jni/src/genomicsdb_GenomicsDBQuery.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/main/jni/src/genomicsdb_GenomicsDBUtils.cc
Copyright: 2023 dātma, inc™
           2019-2021 Omics Data Automation Inc.
           2018 Omics Data Automation Inc. and Intel Corporation
License: Expat

Files: src/resources/CMakeLists.txt
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/resources/genomicsdb_callsets_mapping.proto
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       src/resources/genomicsdb_vid_mapping.proto
Copyright: 2023 dātma, inc™
           2016-2018 Intel Corporation
License: Expat

Files: src/resources/genomicsdb_export_config.proto
       src/resources/genomicsdb_import_config.proto
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: src/test/*
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License: Expat

Files: src/test/cpp/CMakeLists.txt
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           2019 Omics Data Automation, Inc.
License: Expat

Files: src/test/cpp/include/test_mapping_data_loader.h
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/test/cpp/src/test_columnar_gvcf_iterator.cc
 src/test/cpp/src/test_genomicsdb_api.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/test/cpp/src/test_mapping_data_loader.cc
       src/test/cpp/src/test_multid_vector.cc
       src/test/cpp/src/test_non_diploid_mapper.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: src/test/java/*
Copyright: 2016-2018 Intel Corporation
License: Expat

Files: src/test/java/org/genomicsdb/GenomicsDBLibLoaderTest.java
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Copyright: 2018-2023 Omics Data Automation, Inc.
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Files: src/test/java/org/genomicsdb/importer/*
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           2016-2018 Intel Corporation
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Files: src/test/java/org/genomicsdb/reader/GenomicsDBQueryTest.java
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: src/test/java/org/genomicsdb/spark/GenomicsDBInputFormatTest.java
Copyright: 2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: tests/common.py
Copyright: 2018-2023 Omics Data Automation, Inc.
License: Expat

Files: tests/load_genomics_metadata.sh
Copyright: 2016-2018 Intel Corporation
License: Expat

Files: tests/run.py
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: tests/run_spark_hdfs.py
Copyright: 2018-2021 Omics Data Automation, Inc.
           2018 University of California, Los Angeles and Intel Corporation
License: Expat

Files: tests/test_hfile_plugin.sh
Copyright: 2023 dātma, inc™
           2020 Omics Data Automation Inc.
License: Expat

Files: tests/test_tools.sh
Copyright: 2023 da̅tma, inc.
           2021-2023 Omics Data Automation Inc.
License: Expat

Files: tools/*
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License: Expat

Files: tools/CMakeLists.txt
Copyright: 2023 da̅tma, inc.
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: tools/include/*
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           2019-2023 Omics Data Automation, Inc.
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Files: tools/include/vcfdiff.h
Copyright: 2016-2018 Intel Corporation
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Files: tools/src/consolidate_genomicsdb_array.cc
Copyright: 2023 dātma, inc™
           2018-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: tools/src/create_genomicsdb_workspace.cc
Copyright: 2023 dātma, inc™
           2016-2018 Intel Corporation
License: Expat

Files: tools/src/gt_mpi_gather.cc
Copyright: 2018-2023 Omics Data Automation, Inc.
           2016-2018 Intel Corporation
License: Expat

Files: tools/src/vcf2genomicsdb.cc
Copyright: 2023 dātma, inc™
           2021-2023 Omics Data Automation, Inc.
           2016-2017 Intel Corporation
License: Expat

Files: tools/src/vcf2genomicsdb_init.cc
Copyright: 2023 dātma, inc™
           2019-2023 Omics Data Automation, Inc.
License: Expat

Files: debian/*
Copyright: 2022-2024 Pierre Gruet <pgt@debian.org>
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License: Apache-2.0
 On Debian systems the full text of the Apache-2.0 license can be found in
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License: BSD-2-clause
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