partial_sum.h
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// -*- C++ -*-
// Copyright (C) 2007-2017 Free Software Foundation, Inc.
//
// This file is part of the GNU ISO C++ Library. This library is free
// software; you can redistribute it and/or modify it under the terms
// of the GNU General Public License as published by the Free Software
// Foundation; either version 3, or (at your option) any later
// version.
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// General Public License for more details.
// Under Section 7 of GPL version 3, you are granted additional
// permissions described in the GCC Runtime Library Exception, version
// 3.1, as published by the Free Software Foundation.
// You should have received a copy of the GNU General Public License and
// a copy of the GCC Runtime Library Exception along with this program;
// see the files COPYING3 and COPYING.RUNTIME respectively. If not, see
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/** @file parallel/partial_sum.h
* @brief Parallel implementation of std::partial_sum(), i.e. prefix
* sums.
* This file is a GNU parallel extension to the Standard C++ Library.
*/
// Written by Johannes Singler.
#ifndef _GLIBCXX_PARALLEL_PARTIAL_SUM_H
#define _GLIBCXX_PARALLEL_PARTIAL_SUM_H 1
#include <omp.h>
#include <new>
#include <bits/stl_algobase.h>
#include <parallel/parallel.h>
#include <parallel/numericfwd.h>
namespace __gnu_parallel
{
// Problem: there is no 0-element given.
/** @brief Base case prefix sum routine.
* @param __begin Begin iterator of input sequence.
* @param __end End iterator of input sequence.
* @param __result Begin iterator of output sequence.
* @param __bin_op Associative binary function.
* @param __value Start value. Must be passed since the neutral
* element is unknown in general.
* @return End iterator of output sequence. */
template<typename _IIter,
typename _OutputIterator,
typename _BinaryOperation>
_OutputIterator
__parallel_partial_sum_basecase(_IIter __begin, _IIter __end,
_OutputIterator __result,
_BinaryOperation __bin_op,
typename std::iterator_traits <_IIter>::value_type __value)
{
if (__begin == __end)
return __result;
while (__begin != __end)
{
__value = __bin_op(__value, *__begin);
*__result = __value;
++__result;
++__begin;
}
return __result;
}
/** @brief Parallel partial sum implementation, two-phase approach,
no recursion.
* @param __begin Begin iterator of input sequence.
* @param __end End iterator of input sequence.
* @param __result Begin iterator of output sequence.
* @param __bin_op Associative binary function.
* @param __n Length of sequence.
* @return End iterator of output sequence.
*/
template<typename _IIter,
typename _OutputIterator,
typename _BinaryOperation>
_OutputIterator
__parallel_partial_sum_linear(_IIter __begin, _IIter __end,
_OutputIterator __result,
_BinaryOperation __bin_op,
typename std::iterator_traits<_IIter>::difference_type __n)
{
typedef std::iterator_traits<_IIter> _TraitsType;
typedef typename _TraitsType::value_type _ValueType;
typedef typename _TraitsType::difference_type _DifferenceType;
if (__begin == __end)
return __result;
_ThreadIndex __num_threads =
std::min<_DifferenceType>(__get_max_threads(), __n - 1);
if (__num_threads < 2)
{
*__result = *__begin;
return __parallel_partial_sum_basecase(__begin + 1, __end,
__result + 1, __bin_op,
*__begin);
}
_DifferenceType* __borders;
_ValueType* __sums;
const _Settings& __s = _Settings::get();
# pragma omp parallel num_threads(__num_threads)
{
# pragma omp single
{
__num_threads = omp_get_num_threads();
__borders = new _DifferenceType[__num_threads + 2];
if (__s.partial_sum_dilation == 1.0f)
__equally_split(__n, __num_threads + 1, __borders);
else
{
_DifferenceType __first_part_length =
std::max<_DifferenceType>(1,
__n / (1.0f + __s.partial_sum_dilation * __num_threads));
_DifferenceType __chunk_length =
(__n - __first_part_length) / __num_threads;
_DifferenceType __borderstart =
__n - __num_threads * __chunk_length;
__borders[0] = 0;
for (_ThreadIndex __i = 1; __i < (__num_threads + 1); ++__i)
{
__borders[__i] = __borderstart;
__borderstart += __chunk_length;
}
__borders[__num_threads + 1] = __n;
}
__sums = static_cast<_ValueType*>(::operator new(sizeof(_ValueType)
* __num_threads));
_OutputIterator __target_end;
} //single
_ThreadIndex __iam = omp_get_thread_num();
if (__iam == 0)
{
*__result = *__begin;
__parallel_partial_sum_basecase(__begin + 1,
__begin + __borders[1],
__result + 1,
__bin_op, *__begin);
::new(&(__sums[__iam])) _ValueType(*(__result + __borders[1] - 1));
}
else
{
::new(&(__sums[__iam]))
_ValueType(__gnu_parallel::accumulate(
__begin + __borders[__iam] + 1,
__begin + __borders[__iam + 1],
*(__begin + __borders[__iam]),
__bin_op,
__gnu_parallel::sequential_tag()));
}
# pragma omp barrier
# pragma omp single
__parallel_partial_sum_basecase(__sums + 1, __sums + __num_threads,
__sums + 1, __bin_op, __sums[0]);
# pragma omp barrier
// Still same team.
__parallel_partial_sum_basecase(__begin + __borders[__iam + 1],
__begin + __borders[__iam + 2],
__result + __borders[__iam + 1],
__bin_op, __sums[__iam]);
} //parallel
for (_ThreadIndex __i = 0; __i < __num_threads; ++__i)
__sums[__i].~_ValueType();
::operator delete(__sums);
delete[] __borders;
return __result + __n;
}
/** @brief Parallel partial sum front-__end.
* @param __begin Begin iterator of input sequence.
* @param __end End iterator of input sequence.
* @param __result Begin iterator of output sequence.
* @param __bin_op Associative binary function.
* @return End iterator of output sequence. */
template<typename _IIter,
typename _OutputIterator,
typename _BinaryOperation>
_OutputIterator
__parallel_partial_sum(_IIter __begin, _IIter __end,
_OutputIterator __result, _BinaryOperation __bin_op)
{
_GLIBCXX_CALL(__begin - __end)
typedef std::iterator_traits<_IIter> _TraitsType;
typedef typename _TraitsType::value_type _ValueType;
typedef typename _TraitsType::difference_type _DifferenceType;
_DifferenceType __n = __end - __begin;
switch (_Settings::get().partial_sum_algorithm)
{
case LINEAR:
// Need an initial offset.
return __parallel_partial_sum_linear(__begin, __end, __result,
__bin_op, __n);
default:
// Partial_sum algorithm not implemented.
_GLIBCXX_PARALLEL_ASSERT(0);
return __result + __n;
}
}
}
#endif /* _GLIBCXX_PARALLEL_PARTIAL_SUM_H */
__gnu_parallel::__parallel_partial_sum
_OutputIterator __parallel_partial_sum(_IIter __begin, _IIter __end, _OutputIterator __result, _BinaryOperation __bin_op)
Parallel partial sum front-__end.
Definition: partial_sum.h:205
numericfwd.h
std::accumulate
_Tp accumulate(_InputIterator __first, _InputIterator __last, _Tp __init)
Accumulate values in a range.
Definition: stl_numeric.h:120
__gnu_parallel::__parallel_partial_sum_linear
_OutputIterator __parallel_partial_sum_linear(_IIter __begin, _IIter __end, _OutputIterator __result, _BinaryOperation __bin_op, typename std::iterator_traits< _IIter >::difference_type __n)
Parallel partial sum implementation, two-phase approach, no recursion.
Definition: partial_sum.h:89
__gnu_parallel::_Settings
class _Settings Run-time settings for the parallel mode including all tunable parameters.
Definition: settings.h:123
__gnu_parallel::__parallel_partial_sum_basecase
_OutputIterator __parallel_partial_sum_basecase(_IIter __begin, _IIter __end, _OutputIterator __result, _BinaryOperation __bin_op, typename std::iterator_traits< _IIter >::value_type __value)
Base case prefix sum routine.
Definition: partial_sum.h:58
stl_algobase.h
new
__gnu_parallel::_Settings::partial_sum_dilation
float partial_sum_dilation
Ratio for partial_sum. Assume "sum and write result" to be this factor slower than just "sum".
Definition: settings.h:207
_GLIBCXX_CALL
#define _GLIBCXX_CALL(__n)
Macro to produce log message when entering a function.
Definition: compiletime_settings.h:44
__gnu_parallel::_ThreadIndex
uint16_t _ThreadIndex
Unsigned integer to index a thread number. The maximum thread number (for each processor) must fit in...
Definition: types.h:123
parallel.h
End-user include file. Provides advanced settings and tuning options. This file is a GNU parallel ext...
__gnu_parallel
GNU parallel code for public use.
Definition: balanced_quicksort.h:61
__gnu_parallel::__equally_split
_OutputIterator __equally_split(_DifferenceType __n, _ThreadIndex __num_threads, _OutputIterator __s)
function to split a sequence into parts of almost equal size.
Definition: equally_split.h:48
__gnu_parallel::sequential_tag
Forces sequential execution at compile time.
Definition: tags.h:42
__gnu_parallel::_Settings::get
static const _Settings & get()
Get the global settings.