Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: https://github.com/GMOD/GBrowse/releases
Files-Excluded: */contrib
Upstream-Name: GBrowse

Files: *
Copyright: © 2002 Cold Spring Harbor Laboratory and University of California, Berkeley
 © 2008 H. Mark Okada <hmokada@hotmail.com>.
 © 2001,2003,2005,2008 Cold Spring Harbor Laboratory
 © 2010 Ontario Institute for Cancer Research
License: GPL-1+ or Artistic-2.0
 The Generic Genome Browser package versions between 1.0 and 1.8 and
 all associated files are Copyright (c) 2002 Cold Spring Harbor
 Laboratory and University of California, Berkeley. Versions 1.9 and
 higher are copyright (c) 2010 Ontario Institute for Cancer Research.
 .
 This package and its accompanying libraries is free software; you can
 redistribute it and/or modify it under the terms of the GPL (either
 version 1, or at your option, any later version) or the Artistic
 License 2.0.  Refer to LICENSE for the full license text.
 .
 CSHL makes no representations whatsoever as to the SOFTWARE contained
 herein.  It is experimental in nature and is provided WITHOUT WARRANTY
 OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
 WARRANTY, EXPRESS OR IMPLIED.  CSHL MAKES NO REPRESENTATION OR
 WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
 OTHER PROPRIETARY RIGHT.
 .
 By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
 against any loss, claim, damage or liability, of whatsoever kind or
 nature, which may arise from your Institution's respective use,
 handling or storage of the SOFTWARE.
 .
 If publications result from research using this SOFTWARE, we ask that
 CSHL, University of California, Berkeley and the Ontario Institute for
 Cancer Research be acknowledged and/or credit be given to
 CSHL/Berkeley/OICR scientists, as scientifically appropriate.

Files: bin/auto_install_databases.pl
 bin/bed2gff3.pl
 bin/bp_load_gff.pl
 bin/gtf2gff3.pl
 bin/load_genbank.pl
 bin/make_das_conf.pl
 bin/process_gadfly.pl
 bin/process_ncbi_human.pl
 bin/process_sgd.pl
 bin/ucsc_genes2gff.pl
 cgi-bin/gbrowse_img
 conf/plugins/Aligner.pm
 conf/plugins/AttributeHiliter.pm
 conf/plugins/RestrictionAnnotator.pm
 conf/plugins/SequenceDumper.pm
 conf/plugins/SimpleTrackFinder.pm
 conf/plugins/Spectrogram.pm
 conf/plugins/TrackFinder.pm
 docs/pod/GBROWSE_IMG.pod
 docs/pod/MAKE_IMAGES_HOWTO.pod
 docs/pod/PLUGINS_HOWTO.pod
 htdocs/gbrowse_karyotype_help.html
 lib/Bio/DB/GFF/Aggregator/reftranscript.pm
 lib/Bio/DB/GFF/Aggregator/waba_alignment.pm
 lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm
 lib/Bio/Graphics/Browser2/CAlign.pm
 lib/Bio/Graphics/Browser2/Markup.pm
 lib/Bio/Graphics/Browser2/OptionPick.pm
 lib/Bio/Graphics/Browser2/PadAlignment.pm
 lib/Bio/Graphics/Browser2/Realign.pm
 lib/CGI/Toggle.pm
 libalign/CAlign.pm
Copyright: © 2001–4 Cold Spring Harbor Laboratory
 © Jason Stajich and Cold Spring Harbor Laboratories 2002
 © 2009 Ontario Institute for Cancer Research
 © 2007, University of Utah
 © 2002 Regional Blood Center of Ribeirao Preto
 © 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.
License: GPL-1+ or Artistic
 This library is free software; you can redistribute it and/or modify
 it under the same terms as Perl itself.  See DISCLAIMER.txt for
 disclaimers of warranty.

Files: t/Test.pm
Copyright: © 1998-1999 Joshua Nathaniel Pritikin.  All rights reserved.
License: Artistic

Files: htdocs/css/dropdown/default_theme.css htdocs/css/dropdown/dropdown.css
Copyright: © 2008 Live Web Institute. All Rights Reserved.
License: GPL-3+
Comment: Checked on http://lwis.net/free-css-drop-down-menu/: “This CSS Drop-Down Menu
 is free for commercial or personal use and is licensed under the GNU General
 Public License.”

Files: docs/pod/INSTALL.MacOSX.pod
Copyright: © 2003 Cold Spring Harbor Laboratory
License: missing-most-probably-same-as-Perl
 Material in this document is copyright 2001-2003 by the Cold Spring
 Harbor Laboratory. This information is provided "AS-IS" without any
 warranty, expressed or implied.

Files: htdocs/js/*.js
Copyright: © 2005-2010 Thomas Fuchs (http://script.aculo.us, http://mir.aculo.us)
 © 2005-2010 Ivan Krstic (http://blogs.law.harvard.edu/ivan)
 © 2005-2010 Jon Tirsen (http://www.tirsen.com)
 © 2007,2008 Sheldon McKay, Cold Spring Harbor Laboratory
License: MIT

Files: htdocs/js/prototype.js
Copyright: © 2005-2010 Sam Stephenson
 © 2009, The Dojo Foundation
License: Dojo
 Released under the MIT, BSD, and GPL Licenses.
 More information: http://sizzlejs.com/

Files: htdocs/js/x_cook.js
Copyright: © 2004 Michael Foster
License: LGPL-2.1+

Files: htdocs/js/subtracktable.js
Copyright: © 2005-2009 Matt Kruse (javascripttoolbox.com)
License: MIT or GPL
 Dual licensed under the MIT and GPL licenses.
 This basically means you can use this code however you want for
 free, but don't claim to have written it yourself!
 Donations always accepted: http://www.JavascriptToolbox.com/donate/
 .
 Please do not link to the .js files on javascripttoolbox.com from
 your site. Copy the files locally to your server instead.

Files: debian/*
Copyright: 2011-2015 Olivier Sallou <olivier.sallou@irisa.fr>
           2015-2018 Andreas Tille <tille@debian.org>
License: Artistic-2.0 or GPL-1+

License: Artistic
 This program is free software; you can redistribute it and/or modify
 it under the terms of the Artistic License, which comes with Perl.
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 On Debian GNU/Linux systems, the complete text of the Artistic License
 can be found in `/usr/share/common-licenses/Artistic'.

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License: GPL-1+
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 1, or (at your option)
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License: GPL-3+
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 or </usr/share/common-licenses/GPL-3>.

License: LGPL-2.1+
 This library is free software; you can redistribute it and/or
 modify it under the terms of the GNU Lesser General Public
 License as published by the Free Software Foundation; either
 version 2.1 of the License, or (at your option) any later version.
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 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 Lesser General Public License for more details.
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 License along with this library; if not, write to the Free Software
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 .
 On Debian GNU/Linux systems, the complete text of version 2.1 of the
 Lesser General Public License can be found in `/usr/share/common-licenses/LGPL-2.1'.

License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy
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