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Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:

freecontact::_glasso_timer |
freecontact::_rawscore_calc_t | Calculates raw score for an i,j contact
freecontact::contact_t | Contact prediction
freecontact::parset_t | Parameter set structure for predictor::run()
freecontact::predictor | Protein residue contact predictor
std::runtime_error |
freecontact::alilen_error | Alignment length exception
freecontact::icme_timeout_error | Inverse covariance matrix estimation timeout exception
std::vector |
freecontact::d2matrix< uint32_t, uint32_t, int > |
freecontact::af_vector< _Tp > |
freecontact::ali_t | Protein sequence alignment
freecontact::cov_vector< _Tp > |
freecontact::ct_vector< _Tp > |
freecontact::d2matrix< _Tp, _Tri, _Tci > | 2-dimensional matrix
freecontact::pf_vector |