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freecontact::predictor Member List

This is the complete list of members for freecontact::predictor, including all inherited members.

cont_res_t typedef | freecontact::predictor |
dbg | freecontact::predictor |
freq_t typedef | freecontact::predictor |
freq_vec_t typedef | freecontact::predictor |
get_seq_weights(freq_vec_t &__aliw, double &__wtot, const ali_t &__ali, double __clustpc, bool __veczw=true, int __num_threads=0) | freecontact::predictor |
pairfreq_t typedef | freecontact::predictor |
predictor(bool __dbg=false) | freecontact::predictor | inline
run(const ali_t &__ali, const freq_vec_t &__aliw, const double __wtot, double __density, double __gapth, uint16_t __mincontsep, double __pseudocnt, double __pscnt_weight, bool __estimate_ivcov, double __shrink_lambda, bool __cov20, bool __apply_gapth, double __rho, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL) | freecontact::predictor |
run(const ali_t &__ali, double __clustpc, double __density, double __gapth, uint16_t __mincontsep, double __pseudocnt, double __pscnt_weight, bool __estimate_ivcov, double __shrink_lambda, bool __cov20, bool __apply_gapth, double __rho, bool __veczw=true, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL) | freecontact::predictor |
run(const ali_t &__ali, const parset_t &__parset, bool __veczw=true, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL) | freecontact::predictor | inline
time_res_t typedef | freecontact::predictor |
~predictor() | freecontact::predictor | inline virtual