
fastDNAml, version 1.2.1, March 9, 1998

Based on Joseph Felsenstein's

   Nucleic acid sequence Maximum Likelihood method, version 3.3

5 Species, 114 Sites

Quick add (only local branches initially optimized) in effect

Rearrangements of partial trees may cross 1 branch.
Rearrangements of full tree may cross 1 branch.

Total weight of positions in analysis = 60
There are 25 distinct data patterns (columns)

Empirical Base Frequencies:

   A       0.21812
   C       0.25686
   G       0.30872
  T(U)     0.21630

Transition/transversion ratio =   2.000000

(Transition/transversion parameter =   1.531841)

Adding species:
   Sequence1
   Sequence2
   Sequence3
   Sequence4
      Tested 3 alternative trees
      Ln Likelihood =    -175.49147
   Sequence5
      Tested 5 alternative trees
      Ln Likelihood =    -188.51861
      Doing local rearrangements
      Tested 4 alternative trees

Examined 13 trees

                                        +------ Sequence5
   +------------------------------------3  
   !                                    +--------------------- Sequence4
---2  
   !                     +--------------------- Sequence2
   +---------------------1  
   !                     +------------------------------------ Sequence3
   !  
   +------------------------------------ Sequence1

Remember: this is an unrooted tree!

Ln Likelihood =    -188.51861

 Between        And             Length      Approx. Confidence Limits
 -------        ---             ------      ------- ---------- ------
   2             3              0.08381     (  0.00311,     0.17730) **
   3          Sequence5         0.01801     (     zero,     0.05604) *
   3          Sequence4         0.05155     (     zero,     0.11574) **
   2             1              0.04339     (     zero,     0.11187) **
   1          Sequence2         0.05938     (     zero,     0.13473) **
   1          Sequence3         0.08823     (  0.00817,     0.18086) **
   2          Sequence1         0.07614     (  0.00187,     0.16110) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01


Tree also written to treefile.24388

