
fastDNAml, version 1.2.1, March 9, 1998

Based on Joseph Felsenstein's

   Nucleic acid sequence Maximum Likelihood method, version 3.3

5 Species, 114 Sites

Bootstrap random number seed = 137

Quick add (only local branches initially optimized) in effect

Rearrangements of partial trees may cross 1 branch.
Rearrangements of full tree may cross 1 branch.

Total weight of positions in analysis = 114
There are 29 distinct data patterns (columns)

Empirical Base Frequencies:

   A       0.15961
   C       0.27385
   G       0.31035
  T(U)     0.25618

Transition/transversion ratio =   2.000000

(Transition/transversion parameter =   1.591924)

Adding species:
   Sequence1
   Sequence2
   Sequence3
   Sequence4
      Tested 3 alternative trees
      Ln Likelihood =    -353.03694
   Sequence5
      Tested 5 alternative trees
      Ln Likelihood =    -388.06824
      Doing local rearrangements
      Tested 4 alternative trees
      Ln Likelihood =    -383.09705
      Tested 4 alternative trees

Examined 17 trees

                      +---- Sequence5
   +------------------3  
   !                  +------------------ Sequence4
---1  
   !                  +------------------------------------------ Sequence3
   +------------------2  
   !                  +------------- Sequence2
   !  
   +-------------------------------- Sequence1

Remember: this is an unrooted tree!

Ln Likelihood =    -383.09705

 Between        And             Length      Approx. Confidence Limits
 -------        ---             ------      ------- ---------- ------
   1             3              0.06069     (  0.00570,     0.12148) **
   3          Sequence5         0.01740     (     zero,     0.04945) *
   3          Sequence4         0.07628     (  0.02364,     0.13421) **
   1             2              0.06623     (  0.00889,     0.12989) **
   2          Sequence3         0.14394     (  0.06588,     0.23426) **
   2          Sequence2         0.04896     (     zero,     0.10507) **
   1          Sequence1         0.11844     (  0.04707,     0.19992) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01


Tree also written to treefile.24361

