
fastDNAml, version 1.2.1, March 9, 1998

Based on Joseph Felsenstein's

   Nucleic acid sequence Maximum Likelihood method, version 3.3

5 Species, 114 Sites

Quick add (only local branches initially optimized) in effect

Restart option in effect.  Sequence addition will start from appended tree.

Rearrangements of partial trees may cross 0 branches.
Rearrangements of full tree may cross 0 branches.

Total weight of positions in analysis = 114
There are 41 distinct data patterns (columns)

Empirical Base Frequencies:

   A       0.18570
   C       0.24823
   G       0.31783
  T(U)     0.24823

Transition/transversion ratio =   2.000000

(Transition/transversion parameter =   1.571835)

Restarting from tree with the following sequences:
   Sequence1
   Sequence2
   Sequence4
   Sequence5

Adding species:
   Sequence3
      Tested 5 alternative trees
      Ln Likelihood =    -379.14992

Examined 6 trees

   +--------- Sequence5
---2  
   !  +------------------- Sequence4
   +--1  
   !  !                                      +-------------- Sequence3
   !  +--------------------------------------3  
   !                                         +------------------- Sequence2
   !  
   +------------------------------------------- Sequence1

Remember: this is an unrooted tree!

Ln Likelihood =    -379.14992

 Between        And             Length      Approx. Confidence Limits
 -------        ---             ------      ------- ---------- ------
   2          Sequence5         0.02776     (     zero,     0.06734) **
   2             1              0.00396     (     zero,     0.03594)
   1          Sequence4         0.06711     (  0.01506,     0.12427) **
   1             3              0.13351     (  0.05915,     0.21875) **
   3          Sequence3         0.04953     (  0.00347,     0.09953) **
   3          Sequence2         0.06542     (  0.01357,     0.12233) **
   2          Sequence1         0.15529     (  0.07648,     0.24643) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01


Tree also written to treefile.24367

