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elxDeformationFieldTransform.h
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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef elxDeformationFieldTransform_h
#define elxDeformationFieldTransform_h
#include "elxIncludes.h" // include first to avoid MSVS warning
#include "itkDeformationFieldInterpolatingTransform.h"
#include "itkAdvancedCombinationTransform.h"
namespace elastix
{
template <class TElastix>
class ITK_TEMPLATE_EXPORT DeformationFieldTransform
: public itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType,
elx::TransformBase<TElastix>::FixedImageDimension>
, public TransformBase<TElastix>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(DeformationFieldTransform);
using Self = DeformationFieldTransform;
using DeformationFieldInterpolatingTransformType =
itk::DeformationFieldInterpolatingTransform<typename elx::TransformBase<TElastix>::CoordRepType,
elx::TransformBase<TElastix>::FixedImageDimension,
float>;
using Superclass1 = itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType,
elx::TransformBase<TElastix>::FixedImageDimension>;
using Superclass2 = elx::TransformBase<TElastix>;
using Pointer = itk::SmartPointer<Self>;
using ConstPointer = itk::SmartPointer<const Self>;
itkNewMacro(Self);
itkTypeMacro(DeformationFieldTransform, itk::AdvancedCombinationTransform);
elxClassNameMacro("DeformationFieldTransform");
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension);
using typename Superclass1::ScalarType;
using typename Superclass1::ParametersType;
using typename Superclass1::NumberOfParametersType;
using typename Superclass1::JacobianType;
using typename Superclass1::InputVectorType;
using typename Superclass1::OutputVectorType;
using typename Superclass1::InputCovariantVectorType;
using typename Superclass1::OutputCovariantVectorType;
using typename Superclass1::InputVnlVectorType;
using typename Superclass1::OutputVnlVectorType;
using typename Superclass1::InputPointType;
using typename Superclass1::OutputPointType;
using DeformationFieldType = typename DeformationFieldInterpolatingTransformType::DeformationFieldType;
using DeformationFieldVectorType = typename DeformationFieldInterpolatingTransformType::DeformationFieldVectorType;
using DeformationFieldInterpolatingTransformPointer = typename DeformationFieldInterpolatingTransformType::Pointer;
using typename Superclass2::ElastixType;
using typename Superclass2::ParameterMapType;
using typename Superclass2::RegistrationType;
using typename Superclass2::CoordRepType;
using typename Superclass2::FixedImageType;
using typename Superclass2::MovingImageType;
using ITKBaseType = typename Superclass2::ITKBaseType;
using CombinationTransformType = typename Superclass2::CombinationTransformType;
void
ReadFromFile() override;
protected:
DeformationFieldTransform();
~DeformationFieldTransform() override = default;
private:
elxOverrideGetSelfMacro;
ParameterMapType
CreateDerivedTransformParameterMap() const override;
void
WriteDerivedTransformDataToFile() const override;
using DirectionType = typename DeformationFieldType::DirectionType;
const DeformationFieldInterpolatingTransformPointer m_DeformationFieldInterpolatingTransform{
DeformationFieldInterpolatingTransformType::New()
};
DirectionType m_OriginalDeformationFieldDirection;
};
} // end namespace elastix
#ifndef ITK_MANUAL_INSTANTIATION
# include "elxDeformationFieldTransform.hxx"
#endif
#endif // end #ifndef elxDeformationFieldTransform_h
elastix::BaseComponentSE::ElastixType
TElastix ElastixType
Definition elxBaseComponentSE.h:57
elastix::DeformationFieldTransform::elxClassNameMacro
elxClassNameMacro("DeformationFieldTransform")
elastix::DeformationFieldTransform::WriteDerivedTransformDataToFile
void WriteDerivedTransformDataToFile() const override
elastix::DeformationFieldTransform::DeformationFieldTransform
DeformationFieldTransform()
elastix::DeformationFieldTransform::Self
DeformationFieldTransform Self
Definition elxDeformationFieldTransform.h:63
elastix::DeformationFieldTransform::elxOverrideGetSelfMacro
elxOverrideGetSelfMacro
Definition elxDeformationFieldTransform.h:136
elastix::DeformationFieldTransform::ConstPointer
itk::SmartPointer< const Self > ConstPointer
Definition elxDeformationFieldTransform.h:78
elastix::DeformationFieldTransform::ReadFromFile
void ReadFromFile() override
elastix::DeformationFieldTransform::~DeformationFieldTransform
~DeformationFieldTransform() override=default
elastix::DeformationFieldTransform::m_DeformationFieldInterpolatingTransform
const DeformationFieldInterpolatingTransformPointer m_DeformationFieldInterpolatingTransform
Definition elxDeformationFieldTransform.h:150
elastix::DeformationFieldTransform::ITKBaseType
typename Superclass2::ITKBaseType ITKBaseType
Definition elxDeformationFieldTransform.h:122
elastix::DeformationFieldTransform::DeformationFieldInterpolatingTransformType
itk::DeformationFieldInterpolatingTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension, float > DeformationFieldInterpolatingTransformType
Definition elxDeformationFieldTransform.h:67
elastix::DeformationFieldTransform::DeformationFieldVectorType
typename DeformationFieldInterpolatingTransformType::DeformationFieldVectorType DeformationFieldVectorType
Definition elxDeformationFieldTransform.h:111
elastix::DeformationFieldTransform::m_OriginalDeformationFieldDirection
DirectionType m_OriginalDeformationFieldDirection
Definition elxDeformationFieldTransform.h:155
elastix::DeformationFieldTransform::DeformationFieldType
typename DeformationFieldInterpolatingTransformType::DeformationFieldType DeformationFieldType
Definition elxDeformationFieldTransform.h:110
elastix::DeformationFieldTransform::itkStaticConstMacro
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
elastix::DeformationFieldTransform::ParameterMapType
typename TElastix::ParameterMapType ParameterMapType
Definition elxTransformBase.h:199
elastix::DeformationFieldTransform::Superclass2
elx::TransformBase< TElastix > Superclass2
Definition elxDeformationFieldTransform.h:75
elastix::DeformationFieldTransform::Superclass1
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Definition elxDeformationFieldTransform.h:72
elastix::DeformationFieldTransform::CombinationTransformType
typename Superclass2::CombinationTransformType CombinationTransformType
Definition elxDeformationFieldTransform.h:123
elastix::DeformationFieldTransform::ITK_DISALLOW_COPY_AND_MOVE
ITK_DISALLOW_COPY_AND_MOVE(DeformationFieldTransform)
elastix::DeformationFieldTransform::Pointer
itk::SmartPointer< Self > Pointer
Definition elxDeformationFieldTransform.h:77
elastix::DeformationFieldTransform::DeformationFieldInterpolatingTransformPointer
typename DeformationFieldInterpolatingTransformType::Pointer DeformationFieldInterpolatingTransformPointer
Definition elxDeformationFieldTransform.h:113
elastix::DeformationFieldTransform::DirectionType
typename DeformationFieldType::DirectionType DirectionType
Definition elxDeformationFieldTransform.h:146
elastix::DeformationFieldTransform::CreateDerivedTransformParameterMap
ParameterMapType CreateDerivedTransformParameterMap() const override
elastix::TransformBase
This class is the elastix base class for all Transforms.
Definition elxTransformBase.h:138
elastix::TransformBase::FixedImageType
typename TElastix::FixedImageType FixedImageType
Definition elxTransformBase.h:157
elastix::TransformBase::CoordRepType
ElastixBase::CoordRepType CoordRepType
Definition elxTransformBase.h:156
elastix::TransformBase::ParameterMapType
typename TElastix::ParameterMapType ParameterMapType
Definition elxTransformBase.h:199
elastix::TransformBase::MovingImageType
typename TElastix::MovingImageType MovingImageType
Definition elxTransformBase.h:158
elastix::TransformBase::RegistrationType
typename ElastixType::RegistrationBaseType RegistrationType
Definition elxBaseComponentSE.h:62
elastix::TransformBase::TransformBase
TransformBase()=default
elastix::TransformBase::CombinationTransformType
itk::AdvancedCombinationTransform< CoordRepType, Self::FixedImageDimension > CombinationTransformType
Definition elxTransformBase.h:171
elastix::TransformBase::ITKBaseType
CombinationTransformType ITKBaseType
Definition elxTransformBase.h:172
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition itkAdvancedCombinationTransform.h:57
itk::DeformationFieldInterpolatingTransform
Transform that interpolates a given deformation field.
Definition itkDeformationFieldInterpolatingTransform.h:48
elxIncludes.h
itkAdvancedCombinationTransform.h
itkDeformationFieldInterpolatingTransform.h
elastix
Definition elxDefaultConstruct.h:25

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