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elxEulerTransform.h
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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef elxEulerTransform_h
#define elxEulerTransform_h
#include "elxIncludes.h" // include first to avoid MSVS warning
#include "itkAdvancedCombinationTransform.h"
#include "itkEulerTransform.h"
#include "itkCenteredTransformInitializer.h"
namespace elastix
{
template <class TElastix>
class ITK_TEMPLATE_EXPORT EulerTransformElastix
: public itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType,
elx::TransformBase<TElastix>::FixedImageDimension>
, public elx::TransformBase<TElastix>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(EulerTransformElastix);
using Self = EulerTransformElastix;
using Superclass1 = itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType,
elx::TransformBase<TElastix>::FixedImageDimension>;
using Superclass2 = elx::TransformBase<TElastix>;
using EulerTransformType = itk::EulerTransform<typename elx::TransformBase<TElastix>::CoordRepType,
elx::TransformBase<TElastix>::FixedImageDimension>;
using Pointer = itk::SmartPointer<Self>;
using ConstPointer = itk::SmartPointer<const Self>;
itkNewMacro(Self);
// itkTypeMacro( EulerTransformElastix, EulerTransform );
itkTypeMacro(EulerTransformElastix, itk::AdvancedCombinationTransform);
elxClassNameMacro("EulerTransform");
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension);
using typename Superclass1::ScalarType;
using typename Superclass1::ParametersType;
using typename Superclass1::NumberOfParametersType;
using typename Superclass1::JacobianType;
using typename Superclass1::InputPointType;
using typename Superclass1::OutputPointType;
using typename Superclass1::InputVectorType;
using typename Superclass1::OutputVectorType;
using typename Superclass1::InputCovariantVectorType;
using typename Superclass1::OutputCovariantVectorType;
using typename Superclass1::InputVnlVectorType;
using typename Superclass1::OutputVnlVectorType;
using EulerTransformPointer = typename EulerTransformType::Pointer;
using OffsetType = typename EulerTransformType::OffsetType;
using typename Superclass2::ElastixType;
using typename Superclass2::ParameterMapType;
using typename Superclass2::RegistrationType;
using typename Superclass2::CoordRepType;
using typename Superclass2::FixedImageType;
using typename Superclass2::MovingImageType;
using ITKBaseType = typename Superclass2::ITKBaseType;
using CombinationTransformType = typename Superclass2::CombinationTransformType;
using IndexType = typename FixedImageType::IndexType;
using IndexValueType = typename IndexType::IndexValueType;
using SizeType = typename FixedImageType::SizeType;
using PointType = typename FixedImageType::PointType;
using SpacingType = typename FixedImageType::SpacingType;
using RegionType = typename FixedImageType::RegionType;
using DirectionType = typename FixedImageType::DirectionType;
using TransformInitializerType =
itk::CenteredTransformInitializer<EulerTransformType, FixedImageType, MovingImageType>;
using TransformInitializerPointer = typename TransformInitializerType::Pointer;
using typename Superclass2::ScalesType;
void
BeforeRegistration() override;
virtual void
SetScales();
void
ReadFromFile() override;
protected:
EulerTransformElastix();
~EulerTransformElastix() override = default;
virtual bool
ReadCenterOfRotationPoint(InputPointType & rotationPoint) const;
private:
elxOverrideGetSelfMacro;
void
InitializeTransform();
ParameterMapType
CreateDerivedTransformParameterMap() const override;
const EulerTransformPointer m_EulerTransform{ EulerTransformType::New() };
};
} // end namespace elastix
#ifndef ITK_MANUAL_INSTANTIATION
# include "elxEulerTransform.hxx"
#endif
#endif // end #ifndef elxEulerTransform_h
elastix::BaseComponentSE::ElastixType
TElastix ElastixType
Definition elxBaseComponentSE.h:57
elastix::EulerTransformElastix::m_EulerTransform
const EulerTransformPointer m_EulerTransform
Definition elxEulerTransform.h:225
elastix::EulerTransformElastix::ITKBaseType
typename Superclass2::ITKBaseType ITKBaseType
Definition elxEulerTransform.h:143
elastix::EulerTransformElastix::DirectionType
typename FixedImageType::DirectionType DirectionType
Definition elxEulerTransform.h:153
elastix::EulerTransformElastix::OffsetType
typename EulerTransformType::OffsetType OffsetType
Definition elxEulerTransform.h:134
elastix::EulerTransformElastix::ConstPointer
itk::SmartPointer< const Self > ConstPointer
Definition elxEulerTransform.h:98
elastix::EulerTransformElastix::TransformInitializerType
itk::CenteredTransformInitializer< EulerTransformType, FixedImageType, MovingImageType > TransformInitializerType
Definition elxEulerTransform.h:155
elastix::EulerTransformElastix::IndexValueType
typename IndexType::IndexValueType IndexValueType
Definition elxEulerTransform.h:148
elastix::EulerTransformElastix::SizeType
typename FixedImageType::SizeType SizeType
Definition elxEulerTransform.h:149
elastix::EulerTransformElastix::Superclass1
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Definition elxEulerTransform.h:87
elastix::EulerTransformElastix::TransformInitializerPointer
typename TransformInitializerType::Pointer TransformInitializerPointer
Definition elxEulerTransform.h:157
elastix::EulerTransformElastix::SetScales
virtual void SetScales()
elastix::EulerTransformElastix::CreateDerivedTransformParameterMap
ParameterMapType CreateDerivedTransformParameterMap() const override
elastix::EulerTransformElastix::InitializeTransform
void InitializeTransform()
elastix::EulerTransformElastix::elxClassNameMacro
elxClassNameMacro("EulerTransform")
elastix::EulerTransformElastix::SpacingType
typename FixedImageType::SpacingType SpacingType
Definition elxEulerTransform.h:151
elastix::EulerTransformElastix::Self
EulerTransformElastix Self
Definition elxEulerTransform.h:85
elastix::EulerTransformElastix::ParameterMapType
typename TElastix::ParameterMapType ParameterMapType
Definition elxTransformBase.h:199
elastix::EulerTransformElastix::elxOverrideGetSelfMacro
elxOverrideGetSelfMacro
Definition elxEulerTransform.h:201
elastix::EulerTransformElastix::ReadCenterOfRotationPoint
virtual bool ReadCenterOfRotationPoint(InputPointType &rotationPoint) const
elastix::EulerTransformElastix::BeforeRegistration
void BeforeRegistration() override
elastix::EulerTransformElastix::~EulerTransformElastix
~EulerTransformElastix() override=default
elastix::EulerTransformElastix::Pointer
itk::SmartPointer< Self > Pointer
Definition elxEulerTransform.h:97
elastix::EulerTransformElastix::CombinationTransformType
typename Superclass2::CombinationTransformType CombinationTransformType
Definition elxEulerTransform.h:144
elastix::EulerTransformElastix::ITK_DISALLOW_COPY_AND_MOVE
ITK_DISALLOW_COPY_AND_MOVE(EulerTransformElastix)
elastix::EulerTransformElastix::RegionType
typename FixedImageType::RegionType RegionType
Definition elxEulerTransform.h:152
elastix::EulerTransformElastix::Superclass2
elx::TransformBase< TElastix > Superclass2
Definition elxEulerTransform.h:90
elastix::EulerTransformElastix::IndexType
typename FixedImageType::IndexType IndexType
Definition elxEulerTransform.h:147
elastix::EulerTransformElastix::itkStaticConstMacro
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
elastix::EulerTransformElastix::PointType
typename FixedImageType::PointType PointType
Definition elxEulerTransform.h:150
elastix::EulerTransformElastix::EulerTransformPointer
typename EulerTransformType::Pointer EulerTransformPointer
Definition elxEulerTransform.h:133
elastix::EulerTransformElastix::ReadFromFile
void ReadFromFile() override
elastix::EulerTransformElastix::EulerTransformElastix
EulerTransformElastix()
elastix::EulerTransformElastix::EulerTransformType
itk::EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > EulerTransformType
Definition elxEulerTransform.h:94
elastix::TransformBase
This class is the elastix base class for all Transforms.
Definition elxTransformBase.h:138
elastix::TransformBase::FixedImageType
typename TElastix::FixedImageType FixedImageType
Definition elxTransformBase.h:157
elastix::TransformBase::CoordRepType
ElastixBase::CoordRepType CoordRepType
Definition elxTransformBase.h:156
elastix::TransformBase::ParameterMapType
typename TElastix::ParameterMapType ParameterMapType
Definition elxTransformBase.h:199
elastix::TransformBase::MovingImageType
typename TElastix::MovingImageType MovingImageType
Definition elxTransformBase.h:158
elastix::TransformBase::RegistrationType
typename ElastixType::RegistrationBaseType RegistrationType
Definition elxBaseComponentSE.h:62
elastix::TransformBase::InputPointType
typename ITKBaseType::InputPointType InputPointType
Definition elxTransformBase.h:180
elastix::TransformBase::ScalesType
itk::Optimizer::ScalesType ScalesType
Definition elxTransformBase.h:190
elastix::TransformBase::CombinationTransformType
itk::AdvancedCombinationTransform< CoordRepType, Self::FixedImageDimension > CombinationTransformType
Definition elxTransformBase.h:171
elastix::TransformBase::ITKBaseType
CombinationTransformType ITKBaseType
Definition elxTransformBase.h:172
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition itkAdvancedCombinationTransform.h:57
itk::EulerTransform
This class combines the Euler2DTransform with the Euler3DTransform.
Definition itkEulerTransform.h:89
elxIncludes.h
itkAdvancedCombinationTransform.h
itkEulerTransform.h
elastix
Definition elxDefaultConstruct.h:25

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