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itkGradientDifferenceImageToImageMetric2.h
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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
/*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: $RCSfile: itkGradientDifferenceImageToImageMetric2.h,v $
Date: $Date: 2011-29-04 14:33 $
Version: $Revision: 2.0 $
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef itkGradientDifferenceImageToImageMetric2_h
#define itkGradientDifferenceImageToImageMetric2_h
#include "itkAdvancedImageToImageMetric.h"
#include "itkSobelOperator.h"
#include "itkNeighborhoodOperatorImageFilter.h"
#include "itkPoint.h"
#include "itkCastImageFilter.h"
#include "itkResampleImageFilter.h"
#include "itkOptimizer.h"
#include "itkAdvancedCombinationTransform.h"
#include "itkAdvancedRayCastInterpolateImageFunction.h"
namespace itk
{
template <class TFixedImage, class TMovingImage>
class ITK_TEMPLATE_EXPORT GradientDifferenceImageToImageMetric
: public AdvancedImageToImageMetric<TFixedImage, TMovingImage>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(GradientDifferenceImageToImageMetric);
using Self = GradientDifferenceImageToImageMetric;
using Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
itkNewMacro(Self);
itkTypeMacro(GradientDifferenceImageToImageMetric, ImageToImageMetric);
#if defined(_MSC_VER) && (_MSC_VER == 1300)
using RealType = double;
#else
using typename Superclass::RealType;
#endif
using typename Superclass::TransformType;
using ScalarType = typename TransformType::ScalarType;
using typename Superclass::TransformPointer;
using typename Superclass::TransformParametersType;
using typename Superclass::TransformJacobianType;
using typename Superclass::InterpolatorType;
using InterpolatorPointer = typename InterpolatorType::Pointer;
using typename Superclass::MeasureType;
using typename Superclass::DerivativeType;
using typename Superclass::FixedImageType;
using typename Superclass::MovingImageType;
using typename Superclass::FixedImageConstPointer;
using typename Superclass::MovingImageConstPointer;
using FixedImagePixelType = typename TFixedImage::PixelType;
using MovedImagePixelType = typename TMovingImage::PixelType;
using MovingImageRegionType = typename MovingImageType::RegionType;
using ScalesType = typename Optimizer::ScalesType;
itkStaticConstMacro(FixedImageDimension, unsigned int, FixedImageType::ImageDimension);
itkStaticConstMacro(MovedImageDimension, unsigned int, MovingImageType::ImageDimension);
using CombinationTransformType = typename itk::AdvancedCombinationTransform<ScalarType, FixedImageDimension>;
using CombinationTransformPointer = typename CombinationTransformType::Pointer;
using TransformedMovingImageType = itk::Image<FixedImagePixelType, Self::FixedImageDimension>;
using TransformMovingImageFilterType = itk::ResampleImageFilter<MovingImageType, TransformedMovingImageType>;
using RayCastInterpolatorType = typename itk::AdvancedRayCastInterpolateImageFunction<MovingImageType, ScalarType>;
using RayCastInterpolatorPointer = typename RayCastInterpolatorType::Pointer;
using FixedGradientImageType = itk::Image<RealType, Self::FixedImageDimension>;
using CastFixedImageFilterType = itk::CastImageFilter<FixedImageType, FixedGradientImageType>;
using CastFixedImageFilterPointer = typename CastFixedImageFilterType::Pointer;
using FixedGradientPixelType = typename FixedGradientImageType::PixelType;
using MovedGradientImageType = itk::Image<RealType, Self::MovedImageDimension>;
using CastMovedImageFilterType = itk::CastImageFilter<TransformedMovingImageType, MovedGradientImageType>;
using CastMovedImageFilterPointer = typename CastMovedImageFilterType::Pointer;
using MovedGradientPixelType = typename MovedGradientImageType::PixelType;
void
GetDerivative(const TransformParametersType & parameters, DerivativeType & derivative) const override;
MeasureType
GetValue(const TransformParametersType & parameters) const override;
void
GetValueAndDerivative(const TransformParametersType & parameters,
MeasureType & Value,
DerivativeType & derivative) const override;
void
Initialize() override;
void
WriteGradientImagesToFiles() const;
itkSetMacro(Scales, ScalesType);
itkGetConstReferenceMacro(Scales, ScalesType);
itkSetMacro(DerivativeDelta, double);
itkGetConstReferenceMacro(DerivativeDelta, double);
protected:
GradientDifferenceImageToImageMetric() = default;
~GradientDifferenceImageToImageMetric() override = default;
void
PrintSelf(std::ostream & os, Indent indent) const override;
void
ComputeMovedGradientRange() const;
void
ComputeVariance() const;
MeasureType
ComputeMeasure(const TransformParametersType & parameters, const double * subtractionFactor) const;
using FixedSobelFilter = NeighborhoodOperatorImageFilter<FixedGradientImageType, FixedGradientImageType>;
using MovedSobelFilter = NeighborhoodOperatorImageFilter<MovedGradientImageType, MovedGradientImageType>;
private:
mutable MovedGradientPixelType m_Variance[FixedImageDimension]{};
mutable MovedGradientPixelType m_MinMovedGradient[MovedImageDimension]{};
mutable MovedGradientPixelType m_MaxMovedGradient[MovedImageDimension]{};
mutable FixedGradientPixelType m_MinFixedGradient[FixedImageDimension]{};
mutable FixedGradientPixelType m_MaxFixedGradient[FixedImageDimension]{};
typename TransformMovingImageFilterType::Pointer m_TransformMovingImageFilter{
TransformMovingImageFilterType::New()
};
CastFixedImageFilterPointer m_CastFixedImageFilter{ CastFixedImageFilterType::New() };
SobelOperator<FixedGradientPixelType, Self::FixedImageDimension> m_FixedSobelOperators[FixedImageDimension]{};
typename FixedSobelFilter::Pointer m_FixedSobelFilters[Self::FixedImageDimension]{};
ZeroFluxNeumannBoundaryCondition<MovedGradientImageType> m_MovedBoundCond{};
ZeroFluxNeumannBoundaryCondition<FixedGradientImageType> m_FixedBoundCond{};
CastMovedImageFilterPointer m_CastMovedImageFilter{ CastMovedImageFilterType::New() };
SobelOperator<MovedGradientPixelType, Self::MovedImageDimension> m_MovedSobelOperators[MovedImageDimension]{};
typename MovedSobelFilter::Pointer m_MovedSobelFilters[Self::MovedImageDimension]{};
ScalesType m_Scales{};
double m_DerivativeDelta{ 0.001 };
double m_Rescalingfactor{ 1.0 };
CombinationTransformPointer m_CombinationTransform{ CombinationTransformType::New() };
};
} // end namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
# include "itkGradientDifferenceImageToImageMetric2.hxx"
#endif
#endif
double
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition itkAdvancedCombinationTransform.h:57
itk::AdvancedImageToImageMetric::AdvancedImageToImageMetric
AdvancedImageToImageMetric()
itk::AdvancedRayCastInterpolateImageFunction
Projective interpolation of an image at specified positions.
Definition itkAdvancedRayCastInterpolateImageFunction.h:58
itk::GradientDifferenceImageToImageMetric::GetValueAndDerivative
void GetValueAndDerivative(const TransformParametersType &parameters, MeasureType &Value, DerivativeType &derivative) const override
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_CastMovedImageFilter
CastMovedImageFilterPointer m_CastMovedImageFilter
Definition itkGradientDifferenceImageToImageMetric2.h:217
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::Self
GradientDifferenceImageToImageMetric Self
Definition itkGradientDifferenceImageToImageMetric2.h:81
itk::GradientDifferenceImageToImageMetric::itkStaticConstMacro
itkStaticConstMacro(FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::Superclass
AdvancedImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType > Superclass
Definition itkGradientDifferenceImageToImageMetric2.h:82
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_CastFixedImageFilter
CastFixedImageFilterPointer m_CastFixedImageFilter
Definition itkGradientDifferenceImageToImageMetric2.h:207
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_FixedSobelOperators
SobelOperator< FixedGradientPixelType, Self::FixedImageDimension > m_FixedSobelOperators[FixedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:209
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_DerivativeDelta
double m_DerivativeDelta
Definition itkGradientDifferenceImageToImageMetric2.h:224
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_Scales
ScalesType m_Scales
Definition itkGradientDifferenceImageToImageMetric2.h:223
itk::GradientDifferenceImageToImageMetric::Initialize
void Initialize() override
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::ScalarType
typename TransformType::ScalarType ScalarType
Definition itkGradientDifferenceImageToImageMetric2.h:102
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::FixedImagePixelType
typename typename MetricBase< TElastix >::FixedImageType::PixelType FixedImagePixelType
Definition itkGradientDifferenceImageToImageMetric2.h:114
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_TransformMovingImageFilter
TransformMovingImageFilterType::Pointer m_TransformMovingImageFilter
Definition itkGradientDifferenceImageToImageMetric2.h:202
itk::GradientDifferenceImageToImageMetric::~GradientDifferenceImageToImageMetric
~GradientDifferenceImageToImageMetric() override=default
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_CombinationTransform
CombinationTransformPointer m_CombinationTransform
Definition itkGradientDifferenceImageToImageMetric2.h:226
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::MovedImagePixelType
typename typename MetricBase< TElastix >::MovingImageType::PixelType MovedImagePixelType
Definition itkGradientDifferenceImageToImageMetric2.h:115
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_Variance
MovedGradientPixelType m_Variance[FixedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:191
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::CastFixedImageFilterPointer
typename CastFixedImageFilterType::Pointer CastFixedImageFilterPointer
Definition itkGradientDifferenceImageToImageMetric2.h:130
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::CombinationTransformPointer
typename CombinationTransformType::Pointer CombinationTransformPointer
Definition itkGradientDifferenceImageToImageMetric2.h:123
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MaxFixedGradient
FixedGradientPixelType m_MaxFixedGradient[FixedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:199
itk::GradientDifferenceImageToImageMetric::itkStaticConstMacro
itkStaticConstMacro(MovedImageDimension, unsigned int, MovingImageType::ImageDimension)
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::CastMovedImageFilterType
itk::CastImageFilter< TransformedMovingImageType, MovedGradientImageType > CastMovedImageFilterType
Definition itkGradientDifferenceImageToImageMetric2.h:133
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::FixedSobelFilter
NeighborhoodOperatorImageFilter< FixedGradientImageType, FixedGradientImageType > FixedSobelFilter
Definition itkGradientDifferenceImageToImageMetric2.h:185
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MinMovedGradient
MovedGradientPixelType m_MinMovedGradient[MovedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:194
itk::GradientDifferenceImageToImageMetric::PrintSelf
void PrintSelf(std::ostream &os, Indent indent) const override
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::CombinationTransformType
typename itk::AdvancedCombinationTransform< ScalarType, FixedImageDimension > CombinationTransformType
Definition itkGradientDifferenceImageToImageMetric2.h:122
itk::GradientDifferenceImageToImageMetric::GradientDifferenceImageToImageMetric
GradientDifferenceImageToImageMetric()=default
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::ScalesType
typename Optimizer::ScalesType ScalesType
Definition itkGradientDifferenceImageToImageMetric2.h:117
itk::GradientDifferenceImageToImageMetric::WriteGradientImagesToFiles
void WriteGradientImagesToFiles() const
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MaxMovedGradient
MovedGradientPixelType m_MaxMovedGradient[MovedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:195
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_FixedBoundCond
ZeroFluxNeumannBoundaryCondition< FixedGradientImageType > m_FixedBoundCond
Definition itkGradientDifferenceImageToImageMetric2.h:214
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::ConstPointer
SmartPointer< const Self > ConstPointer
Definition itkGradientDifferenceImageToImageMetric2.h:85
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MovedSobelFilters
MovedSobelFilter::Pointer m_MovedSobelFilters[Self::MovedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:221
itk::GradientDifferenceImageToImageMetric::ComputeMovedGradientRange
void ComputeMovedGradientRange() const
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::Pointer
SmartPointer< Self > Pointer
Definition itkGradientDifferenceImageToImageMetric2.h:84
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::RayCastInterpolatorPointer
typename RayCastInterpolatorType::Pointer RayCastInterpolatorPointer
Definition itkGradientDifferenceImageToImageMetric2.h:127
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::MovedGradientPixelType
typename MovedGradientImageType::PixelType MovedGradientPixelType
Definition itkGradientDifferenceImageToImageMetric2.h:135
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MinFixedGradient
FixedGradientPixelType m_MinFixedGradient[FixedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:198
itk::GradientDifferenceImageToImageMetric::GetDerivative
void GetDerivative(const TransformParametersType &parameters, DerivativeType &derivative) const override
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::MovedGradientImageType
itk::Image< RealType, Self::MovedImageDimension > MovedGradientImageType
Definition itkGradientDifferenceImageToImageMetric2.h:132
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::InterpolatorPointer
typename InterpolatorType::Pointer InterpolatorPointer
Definition itkGradientDifferenceImageToImageMetric2.h:107
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::MovingImageRegionType
typename MovingImageType::RegionType MovingImageRegionType
Definition itkGradientDifferenceImageToImageMetric2.h:116
itk::GradientDifferenceImageToImageMetric::GetValue
MeasureType GetValue(const TransformParametersType &parameters) const override
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::MovedSobelFilter
NeighborhoodOperatorImageFilter< MovedGradientImageType, MovedGradientImageType > MovedSobelFilter
Definition itkGradientDifferenceImageToImageMetric2.h:187
itk::GradientDifferenceImageToImageMetric::ComputeMeasure
MeasureType ComputeMeasure(const TransformParametersType &parameters, const double *subtractionFactor) const
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MovedBoundCond
ZeroFluxNeumannBoundaryCondition< MovedGradientImageType > m_MovedBoundCond
Definition itkGradientDifferenceImageToImageMetric2.h:213
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_FixedSobelFilters
FixedSobelFilter::Pointer m_FixedSobelFilters[Self::FixedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:211
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::CastMovedImageFilterPointer
typename CastMovedImageFilterType::Pointer CastMovedImageFilterPointer
Definition itkGradientDifferenceImageToImageMetric2.h:134
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_MovedSobelOperators
SobelOperator< MovedGradientPixelType, Self::MovedImageDimension > m_MovedSobelOperators[MovedImageDimension]
Definition itkGradientDifferenceImageToImageMetric2.h:219
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::FixedGradientPixelType
typename FixedGradientImageType::PixelType FixedGradientPixelType
Definition itkGradientDifferenceImageToImageMetric2.h:131
itk::GradientDifferenceImageToImageMetric::ComputeVariance
void ComputeVariance() const
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::RayCastInterpolatorType
typename itk::AdvancedRayCastInterpolateImageFunction< MovingImageType, ScalarType > RayCastInterpolatorType
Definition itkGradientDifferenceImageToImageMetric2.h:126
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::CastFixedImageFilterType
itk::CastImageFilter< FixedImageType, FixedGradientImageType > CastFixedImageFilterType
Definition itkGradientDifferenceImageToImageMetric2.h:129
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::FixedGradientImageType
itk::Image< RealType, Self::FixedImageDimension > FixedGradientImageType
Definition itkGradientDifferenceImageToImageMetric2.h:128
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::TransformMovingImageFilterType
itk::ResampleImageFilter< MovingImageType, TransformedMovingImageType > TransformMovingImageFilterType
Definition itkGradientDifferenceImageToImageMetric2.h:125
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::m_Rescalingfactor
double m_Rescalingfactor
Definition itkGradientDifferenceImageToImageMetric2.h:225
itk::GradientDifferenceImageToImageMetric::ITK_DISALLOW_COPY_AND_MOVE
ITK_DISALLOW_COPY_AND_MOVE(GradientDifferenceImageToImageMetric)
itk::GradientDifferenceImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >::TransformedMovingImageType
itk::Image< FixedImagePixelType, Self::FixedImageDimension > TransformedMovingImageType
Definition itkGradientDifferenceImageToImageMetric2.h:124
itkAdvancedCombinationTransform.h
itkAdvancedImageToImageMetric.h
itkAdvancedRayCastInterpolateImageFunction.h
itk
Definition itkAdvancedImageToImageMetric.h:43

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