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                                    DISULFIND                                  
              Cysteines Disulfide Bonding State and Connectivity Predictor     
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Query Name: res_id_41483.blastPsiMatTmb


                                                                          +-------------
                                            +---------+         +---------|-----------+ 
                                            |         |         |         |           | 
         .........10........20........30........40........50........60........70........
AA       MPGIVELPSLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCA
DB_state                                    1         1         1         1           1 
DB_conf                                     7         8         8         8           8 
DB_flip                                                                                 

         --------+                                                                      
                 |           +---------+                                                
                 |           |         |                                                
         80........90........100.......110.......120.......130.......140.......150......
AA       EPFTEYWTCIDYSGLQLFRRCRKQQAQFDECVLDKLGWVRPDLGDLSKVTKVKTDRPLPENPYHSRARPEPNPEVEGDL
DB_state         1           1         1                                                
DB_conf          8           7         6                                                
DB_flip                                                                                 

                       
                       
                       
         .160.......170
AA       KPARHGSRLFFWTM
DB_state               
DB_conf                
DB_flip                

DB_bond   bond(36,46)
DB_bond   bond(56,78)
DB_bond   bond(66,88)
DB_bond   bond(100,110)

Conn_conf 0.57134

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Abbreviations used:

AA        = amino acid sequence
DB_state  = predicted disulfide bonding state
            (1=disulfide bonded, 0=not disulfide bonded)
DB_conf   = confidence of disulfide bonding state prediction (0=low to 9=high)
DB_flip   = an asterisk (*) indicates that the viterbi aligner overruled the
            most likely predition for that residue in order to achieve a
            consistent prediction at a protein level (even number of disulfide
            bonded cysteines, as interchain bonds are ignored).
DB_bond   = position in sequence of a pair of cysteines predicted to be forming
            a disulfide bridge.
Conn_conf = confidence of connectivity assignment given the predicted disulfide
            bonding state (real value in [0,1])

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Please cite:

A. Ceroni, A. Passerini, A. Vullo and P. Frasconi.
"DISULFIND: a Disulfide Bonding State and Cysteine Connectivity Prediction Server"
Nucleic Acids Research, 34(Web Server issue):W177--W181, 2006.

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Questions and comments are very appreciated.
Please, send email to: cystein@dsi.unifi.it

Copyright 2006, Alessio Ceroni, Andrea Passerini, Alessandro Vullo

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