Package: discosnp
Version: 1:2.6.2-5
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2733
Depends: libc6 (>= 2.38), libgatbcore3 (>= 1.4.2+dfsg), libgcc-s1 (>= 3.3.1), libhdf5-310 (>= 1.14.3), libstdc++6 (>= 14), zlib1g (>= 1:1.2.6), python3:any, python3, gatb-core
Section: science
Priority: optional
Homepage: http://colibread.inria.fr/discosnp/
Description: discovering Single Nucleotide Polymorphism from raw set(s) of reads
 Software discoSnp is designed for discovering Single Nucleotide
 Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
 Sequencers (NGS).
 .
 Note that number of input read sets is not constrained, it can be one, two,
 or more. Note also that no other data as reference genome or annotations
 are needed.
 .
 The software is composed by two modules. First module, kissnp2, detects SNPs
 from read sets. A second module, kissreads, enhance the kissnp2 results by
 computing per read set  and for each found SNP:
 .
  1) its mean read coverage
  2) the (phred) quality of reads generating the polymorphism.
 .
 This program is superseded by DiscoSnp++.
