# Release notes for DIPY version 0.16

GitHub stats for 2018/12/12 - 2019/03/10 (tag: 0.15.0)

These lists are automatically generated, and may be incomplete or contain duplicates.

The following 14 authors contributed 361 commits.

- Ariel Rokem

- Bramsh Qamar

- Clément Zotti

- Eleftherios Garyfallidis

- Francois Rheault

- Gabriel Girard

- Jean-Christophe Houde

- Jon Haitz Legarreta Gorroño

- Katrin Leinweber

- Kesshi Jordan

- Parichit Sharma

- Serge Koudoro

- Shreyas Fadnavis

- Yijun Liu

We closed a total of 103 issues, 41 pull requests and 62 regular issues; this is the full list (generated with the script `tools/github_stats.py`):

Pull Requests (41):

- PR #1755: Bundle Analysis and Linear mixed Models Workflows

- PR #1748: [REBASED ] Symmetric Diffeomorphic registration workflow

- PR #1714: DOC: Add Cython style guideline for DIPY.

- PR #1726: IVIM MIX Model (MicroLearn)

- PR #1753: BF: Fixes #1751, by adding a scale key-word arg to decfa

- PR #1743: Horizon

- PR #1749: [Fix] Tutorial syntax

- PR #1739: IVIM Workflow

- PR #1695: A few tractometry functions

- PR #1741: [Fix] Pre-build : From relative to absolute import

- PR #1742: [REBASED] Apply Transform Workflow

- PR #1745: Adjust number of threads for SLR in Recobundles

- PR #1746: [DOC] Add NIH to sponsor list

- PR #1735: [Rebase] Affine Registration Workflow with Supporting Quality Metrics

- PR #1738: [FIX] Python 3 compatibility for some tools script

- PR #1740: [FIX] mapmri with cvxpy 1.0.15

- PR #1730: [Fix] Cython syntax error

- PR #1666: Remove the points added outside of a mask. Fix the related tests.

- PR #1737: Doc Fix

- PR #1733: Minor Doc Fix

- PR #1732: MAIIncrement Python version for testing to 3.6

- PR #1716: DOC: Add Imports section on package shorthands recommendations.

- PR #1640: Workflows - Adding PFT, probabilistic, closestpeaks tracking

- PR #1652: Switching tests to pytest

- PR #1720: [WIP] DIPY Workshop link on current website

- PR #1719: BF: Syntax fix example images not rendering

- PR #1715: DOC: Avoid the bullet points being interpreted as quoted blocks.

- PR #1706: BUG: Fix Cython one-liner non-trivial type declaration warnings.

- PR #1705: BUG: Fix Numpy .random.random_integer deprecation warning.

- PR #1704: DOC: Fix typo in linear_fascicle_evaluation.py script.

- PR #1701: BUG: Fix Sphinx math notation documentation warnings.

- PR #1707: BUG: Address numpy.matrix PendingDeprecation warnings.

- PR #1703: BUG: Fix blank image being recorded at linear_fascicle_evaluation.py.

- PR #1700: DOC: Use triple double-quoted strings for docstrings.

- PR #1708: BF: Clip the values before passing to arccos, instead of fixing nans.

- PR #1710: DOC: fix typo in instruction below sample snippet

- PR #1702: BUG: Fix dipy.io.trackvis deprecation warnings.

- PR #1697: Hyperlink DOIs to preferred resolver

- PR #1696: Transfer release notes to a specific folder

- PR #1690: Typo in release notes

- PR #1693: Changed the GSoC conduction years

Issues (62):

- #1757: NI Learn info from sensors designed to acseptible eeg format?

- #1755: Bundle Analysis and Linear mixed Models Workflows

- #1748: [REBASED ] Symmetric Diffeomorphic registration workflow

- #1714: DOC: Add Cython style guideline for DIPY.

- #1726: IVIM MIX Model (MicroLearn)

- #1751: Scale values in decfa

- #1753: BF: Fixes #1751, by adding a scale key-word arg to decfa

- #1754: DeprecationWarning: This function is deprecated. Please call randint(0, 10000 + 1) instead C:UsersranjiAnaconda3libsite-packagesipykernel_launcher.py:14: DeprecationWarning: imsave is deprecated! imsave is deprecated in SciPy 1.0.0, and will be removed in 1.2.0. Use `imageio.imwrite` instead.

- #1743: Horizon

- #1749: [Fix] Tutorial syntax

- #1616: Implementing the Diffeomorphic registration

- #1739: IVIM Workflow

- #1695: A few tractometry functions

- #1741: [Fix] Pre-build : From relative to absolute import

- #1742: [REBASED] Apply Transform Workflow

- #1745: Adjust number of threads for SLR in Recobundles

- #1746: [DOC] Add NIH to sponsor list

- #1605: Cleaned PR for Apply Transform Workflow to quickly register a set of moving NIFTI images using a given affine matrix.

- #1735: [Rebase] Affine Registration Workflow with Supporting Quality Metrics

- #1738: [FIX] Python 3 compatibility for some tools script

- #1740: [FIX] mapmri with cvxpy 1.0.15

- #1730: [Fix] Cython syntax error

- #1661: Local Tracking - BinaryTissueClassifier - dropping the last point

- #1666: Remove the points added outside of a mask. Fix the related tests.

- #1737: Doc Fix

- #1604: Cleaned PR for Affine Registration Workflow with Supporting Quality Metrics

- #1734: Documentation Error

- #1733: Minor Doc Fix

- #1565: New warnings with PRE=1

- #1732: MAIIncrement Python version for testing to 3.6

- #1716: DOC: Add Imports section on package shorthands recommendations.

- #1640: Workflows - Adding PFT, probabilistic, closestpeaks tracking

- #1729: N3/N4 Bias correction?

- #1652: Switching tests to pytest

- #1280: Switch testing to pytest?

- #1727: Upgrade Scipy for MIX framework?

- #1723: Failure on

- #1720: [WIP] DIPY Workshop link on current website

- #1718: cannot import name window

- #1719: BF: Syntax fix example images not rendering

- #1717: cannot import packages of dipy.viz

- #1715: DOC: Avoid the bullet points being interpreted as quoted blocks.

- #1706: BUG: Fix Cython one-liner non-trivial type declaration warnings.

- #1705: BUG: Fix Numpy .random.random_integer deprecation warning.

- #1664: Deprecation warnings on testing

- #1704: DOC: Fix typo in linear_fascicle_evaluation.py script.

- #1701: BUG: Fix Sphinx math notation documentation warnings.

- #1707: BUG: Address numpy.matrix PendingDeprecation warnings.

- #1633: Blank png saved/displayed on documentation

- #1703: BUG: Fix blank image being recorded at linear_fascicle_evaluation.py.

- #1700: DOC: Use triple double-quoted strings for docstrings.

- #1708: BF: Clip the values before passing to arccos, instead of fixing nans.

- #1698: test failure in travis

- #1710: DOC: fix typo in instruction below sample snippet

- #1702: BUG: Fix dipy.io.trackvis deprecation warnings.

- #1697: Hyperlink DOIs to preferred resolver

- #1696: Transfer release notes to a specific folder

- #1691: Doc folder for release notes

- #1690: Typo in release notes

- #1693: Changed the GSoC conduction years

- #1692: Minor doc fix

- #1632: Link broken on website